Wall clock time and date at job start Tue Mar 31 2020 23:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86802 * 120.00097 * 2 1 4 4 H 1.48496 * 109.47067 * 269.99516 * 3 2 1 5 5 H 1.48498 * 109.46955 * 29.99799 * 3 2 1 6 6 H 1.48503 * 109.46865 * 149.99691 * 3 2 1 7 7 C 1.39897 * 120.00230 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00607 * 191.16656 * 7 2 1 9 9 C 1.41162 * 119.99699 * 11.16845 * 7 2 1 10 10 C 1.40874 * 120.15811 * 210.55937 * 9 7 2 11 11 C 1.36378 * 119.82273 * 179.97438 * 10 9 7 12 12 C 1.39482 * 120.16805 * 359.97438 * 11 10 9 13 13 N 1.39241 * 119.83003 * 179.97438 * 12 11 10 14 14 C 1.34776 * 120.00155 * 213.50535 * 13 12 11 15 15 O 1.21586 * 119.99617 * 7.58145 * 14 13 12 16 16 N 1.34771 * 120.00584 * 187.56972 * 14 13 12 17 17 C 1.46929 * 120.62585 * 354.54852 * 16 14 13 18 18 C 1.53199 * 108.77393 * 233.62216 * 17 16 14 19 19 C 1.53040 * 109.31043 * 305.37003 * 18 17 16 20 20 C 1.53039 * 109.54119 * 61.36124 * 19 18 17 21 21 H 1.08998 * 109.51981 * 58.60776 * 20 19 18 22 22 O 1.42908 * 109.49522 * 178.68061 * 20 19 18 23 23 C 1.42896 * 113.99795 * 209.84007 * 22 20 19 24 24 C 1.53002 * 109.46786 * 180.02562 * 23 22 20 25 25 O 1.42893 * 109.47362 * 64.99998 * 24 23 22 26 26 C 1.46919 * 120.63420 * 174.56155 * 16 14 13 27 27 C 1.39481 * 120.33752 * 0.25439 * 12 11 10 28 28 C 1.36377 * 120.16616 * 359.48270 * 27 12 11 29 29 H 0.96998 * 120.00082 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.09111 * 359.95214 * 10 9 7 31 31 H 1.07995 * 119.91317 * 180.02562 * 11 10 9 32 32 H 0.96997 * 120.00516 * 33.51440 * 13 12 11 33 33 H 1.08996 * 109.58907 * 353.41259 * 17 16 14 34 34 H 1.09006 * 109.58707 * 113.69995 * 17 16 14 35 35 H 1.08997 * 109.49224 * 65.31357 * 18 17 16 36 36 H 1.08992 * 109.49639 * 185.41604 * 18 17 16 37 37 H 1.09003 * 109.46231 * 301.33732 * 19 18 17 38 38 H 1.09000 * 109.45664 * 181.38935 * 19 18 17 39 39 H 1.08998 * 109.46930 * 300.00051 * 23 22 20 40 40 H 1.08995 * 109.47545 * 59.99874 * 23 22 20 41 41 H 1.09008 * 109.46693 * 185.00320 * 24 23 22 42 42 H 1.09000 * 109.46635 * 304.99302 * 24 23 22 43 43 H 0.96706 * 114.00177 * 179.97438 * 25 24 23 44 44 H 1.08997 * 109.58734 * 6.58731 * 26 16 14 45 45 H 1.09008 * 109.58884 * 246.16186 * 26 16 14 46 46 H 1.07993 * 119.91816 * 179.74587 * 27 12 11 47 47 H 1.07992 * 120.09069 * 180.27616 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4904 2.0463 -1.4000 5 1 1.4402 2.6527 0.7000 6 1 3.5403 1.4401 0.7001 7 6 2.0083 -1.2115 0.0005 8 1 3.0729 -1.2204 0.1817 9 6 1.3225 -2.4225 -0.2357 10 6 1.7745 -3.6188 0.3552 11 6 1.1065 -4.7848 0.1228 12 6 -0.0218 -4.7947 -0.6972 13 7 -0.6982 -5.9893 -0.9302 14 6 -1.2883 -6.2082 -2.1220 15 8 -1.1155 -5.4279 -3.0383 16 7 -2.0697 -7.2920 -2.2982 17 6 -2.1931 -8.3055 -1.2416 18 6 -1.8642 -9.6791 -1.8351 19 6 -2.7548 -9.9300 -3.0541 20 6 -2.4783 -8.8652 -4.1180 21 1 -1.4259 -8.8970 -4.4001 22 8 -3.2882 -9.1184 -5.2679 23 6 -2.7026 -8.6862 -6.4977 24 6 -3.6520 -9.0054 -7.6544 25 8 -4.8484 -8.2367 -7.5146 26 6 -2.8141 -7.4827 -3.5504 27 6 -0.4726 -3.6151 -1.2896 28 6 0.1819 -2.4405 -1.0622 29 1 -0.4850 0.8400 -0.0004 30 1 2.6480 -3.6126 0.9904 31 1 1.4515 -5.7026 0.5754 32 1 -0.7449 -6.6639 -0.2348 33 1 -1.4956 -8.0795 -0.4351 34 1 -3.2119 -8.3072 -0.8540 35 1 -0.8175 -9.7031 -2.1382 36 1 -2.0449 -10.4512 -1.0874 37 1 -3.8019 -9.8813 -2.7551 38 1 -2.5401 -10.9171 -3.4636 39 1 -2.5269 -7.6112 -6.4584 40 1 -1.7557 -9.2038 -6.6510 41 1 -3.1690 -8.7575 -8.5997 42 1 -3.8983 -10.0671 -7.6398 43 1 -5.4974 -8.3884 -8.2153 44 1 -2.5265 -6.7136 -4.2672 45 1 -3.8843 -7.4189 -3.3527 46 1 -1.3445 -3.6313 -1.9266 47 1 -0.1708 -1.5271 -1.5179 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172655806.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:30 Heat of formation + Delta-G solvation = -119.056129 kcal Electronic energy + Delta-G solvation = -28526.259736 eV Core-core repulsion = 24480.069252 eV Total energy + Delta-G solvation = -4046.190484 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 6.92 seconds Orbital eigenvalues (eV) -41.81068 -40.08187 -39.14364 -38.02135 -37.01519 -36.24650 -34.78633 -33.53457 -31.78521 -31.42666 -30.75634 -29.79672 -27.22078 -25.98098 -24.21525 -23.36603 -23.25585 -22.89025 -21.80799 -20.45648 -19.49737 -19.19740 -18.61037 -18.09931 -17.81208 -17.14987 -16.75688 -16.47048 -16.03728 -15.97618 -15.72585 -15.44571 -15.36244 -14.99877 -14.61069 -14.47592 -14.33761 -14.13183 -13.93448 -13.84511 -13.60663 -13.34827 -13.23072 -12.91041 -12.81747 -12.73369 -12.40753 -12.13651 -12.02969 -11.89020 -11.66114 -11.58461 -11.51635 -11.24681 -11.07281 -10.99191 -10.77861 -10.69551 -9.68047 -9.45828 -8.76058 -8.53834 -6.27547 0.84734 1.13488 1.38718 1.45846 1.52583 1.56745 2.12033 2.23280 2.58030 2.80354 2.99825 3.36931 3.71252 3.73667 3.76720 3.91110 3.99115 4.12568 4.14179 4.20887 4.42195 4.43587 4.44503 4.49070 4.52356 4.62776 4.70020 4.74234 4.79433 4.89541 4.94533 4.99703 5.09783 5.12338 5.16516 5.29310 5.30529 5.40471 5.46453 5.63371 5.76370 6.04040 6.11548 6.12346 6.15759 6.35905 6.69359 6.91510 6.95477 6.97900 7.02247 7.58038 8.40605 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017276 B = 0.002338 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.354693 B =11972.830683 C =13162.928704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.027 3.973 3 Si 0.986 3.014 4 H -0.267 1.267 5 H -0.270 1.270 6 H -0.254 1.254 7 C -0.497 4.497 8 H 0.080 0.920 9 C 0.070 3.930 10 C -0.213 4.213 11 C -0.104 4.104 12 C 0.036 3.964 13 N -0.656 5.656 14 C 0.694 3.306 15 O -0.626 6.626 16 N -0.621 5.621 17 C 0.098 3.902 18 C -0.123 4.123 19 C -0.108 4.108 20 C 0.082 3.918 21 H 0.059 0.941 22 O -0.382 6.382 23 C 0.048 3.952 24 C 0.079 3.921 25 O -0.595 6.595 26 C 0.112 3.888 27 C -0.105 4.105 28 C -0.168 4.168 29 H 0.284 0.716 30 H 0.114 0.886 31 H 0.137 0.863 32 H 0.412 0.588 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.117 0.883 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.036 0.964 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.067 0.933 43 H 0.397 0.603 44 H 0.059 0.941 45 H 0.074 0.926 46 H 0.086 0.914 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.960 -22.994 -7.080 25.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.186 4.186 3 Si 0.807 3.193 4 H -0.192 1.192 5 H -0.194 1.194 6 H -0.177 1.177 7 C -0.527 4.527 8 H 0.098 0.902 9 C 0.068 3.932 10 C -0.233 4.233 11 C -0.124 4.124 12 C -0.058 4.058 13 N -0.306 5.306 14 C 0.396 3.604 15 O -0.506 6.506 16 N -0.360 5.360 17 C -0.024 4.024 18 C -0.161 4.161 19 C -0.146 4.146 20 C 0.023 3.977 21 H 0.077 0.923 22 O -0.300 6.300 23 C -0.029 4.029 24 C 0.002 3.998 25 O -0.404 6.404 26 C -0.012 4.012 27 C -0.125 4.125 28 C -0.188 4.188 29 H 0.095 0.905 30 H 0.132 0.868 31 H 0.155 0.845 32 H 0.252 0.748 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.084 0.916 36 H 0.135 0.865 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.055 0.945 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.086 0.914 43 H 0.247 0.753 44 H 0.078 0.922 45 H 0.092 0.908 46 H 0.104 0.896 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.965 -22.210 -7.189 24.361 hybrid contribution 0.041 0.973 -0.502 1.096 sum -6.924 -21.237 -7.691 23.624 Atomic orbital electron populations 1.69904 1.09006 1.30174 1.37500 1.26801 0.95593 1.04650 0.91541 0.85148 0.79082 0.75860 0.79243 1.19178 1.19417 1.17717 1.19768 0.96296 0.91569 1.45055 0.90166 1.18008 0.92139 0.93774 0.89306 1.20878 1.03701 0.93120 1.05576 1.20363 0.93282 0.98348 1.00412 1.17065 0.97130 0.84323 1.07304 1.42054 1.55875 1.18629 1.14065 1.16100 0.79425 0.81975 0.82881 1.90892 1.67485 1.49503 1.42756 1.47208 1.48040 1.22292 1.18451 1.22072 1.03644 0.87492 0.89144 1.21907 0.99918 0.96363 0.97891 1.21573 1.01412 0.97874 0.93740 1.22442 0.94279 0.94043 0.86908 0.92338 1.87935 1.45965 1.81689 1.14396 1.22857 0.96673 0.98963 0.84386 1.22287 0.85626 0.95712 0.96170 1.86540 1.30316 1.68445 1.55060 1.21843 0.95791 0.98279 0.85318 1.20424 0.99384 0.92450 1.00292 1.20835 1.00125 0.95990 1.01845 0.90519 0.86775 0.84501 0.74760 0.88956 0.89331 0.91625 0.86495 0.90390 0.89479 0.94548 0.89891 0.89850 0.91433 0.75305 0.92236 0.90751 0.89591 0.88901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.72 10.97 21.82 0.24 -46.48 16 2 C 0.03 1.43 5.23 85.24 0.45 1.87 16 3 Si 0.99 40.11 29.57 68.60 2.03 42.14 16 4 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 5 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 6 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 7 C -0.50 -27.65 9.04 23.39 0.21 -27.44 16 8 H 0.08 4.23 7.87 -2.91 -0.02 4.21 16 9 C 0.07 3.95 5.53 -21.27 -0.12 3.84 16 10 C -0.21 -10.35 9.74 22.48 0.22 -10.13 16 11 C -0.10 -4.42 9.89 22.14 0.22 -4.20 16 12 C 0.04 1.63 6.28 38.56 0.24 1.87 16 13 N -0.66 -23.40 5.22 -316.78 -1.65 -25.05 16 14 C 0.69 26.41 7.98 179.06 1.43 27.84 16 15 O -0.63 -30.56 13.51 -3.99 -0.05 -30.61 16 16 N -0.62 -17.13 2.97 -836.92 -2.49 -19.62 16 17 C 0.10 1.64 6.39 86.36 0.55 2.19 16 18 C -0.12 -1.47 6.08 30.67 0.19 -1.29 16 19 C -0.11 -1.57 5.53 30.62 0.17 -1.40 16 20 C 0.08 1.75 2.76 30.67 0.08 1.84 16 21 H 0.06 1.30 7.79 -2.39 -0.02 1.28 16 22 O -0.38 -8.67 9.96 -144.34 -1.44 -10.11 16 23 C 0.05 0.94 6.13 71.98 0.44 1.38 16 24 C 0.08 1.17 7.43 71.98 0.53 1.71 16 25 O -0.59 -11.26 13.62 -144.34 -1.97 -13.23 16 26 C 0.11 3.08 6.06 86.36 0.52 3.60 16 27 C -0.11 -5.63 8.57 22.13 0.19 -5.44 16 28 C -0.17 -9.73 8.59 22.48 0.19 -9.53 16 29 H 0.28 14.45 8.30 -92.71 -0.77 13.68 16 30 H 0.11 5.05 8.06 -2.91 -0.02 5.02 16 31 H 0.14 4.52 8.06 -2.91 -0.02 4.50 16 32 H 0.41 10.77 6.30 -92.71 -0.58 10.19 16 33 H 0.09 1.32 5.64 -2.39 -0.01 1.30 16 34 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 35 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.04 0.88 8.02 -2.39 -0.02 0.86 16 40 H 0.08 1.26 8.08 -2.39 -0.02 1.24 16 41 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 42 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.40 3.36 9.12 -74.05 -0.68 2.68 16 44 H 0.06 2.06 6.87 -2.39 -0.02 2.04 16 45 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 46 H 0.09 4.79 6.46 -2.91 -0.02 4.78 16 47 H 0.09 5.73 6.36 -2.91 -0.02 5.71 16 Total: -1.00 -79.09 380.45 -0.06 -79.15 By element: Atomic # 1 Polarization: 37.37 SS G_CDS: -0.26 Total: 37.11 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: 5.52 Total: -13.30 kcal Atomic # 7 Polarization: -87.26 SS G_CDS: -3.90 Total: -91.16 kcal Atomic # 8 Polarization: -50.49 SS G_CDS: -3.46 Total: -53.94 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.14 kcal Total: -79.09 -0.06 -79.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172655806.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.904 kcal (2) G-P(sol) polarization free energy of solvation -79.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.92 seconds