Wall clock time and date at job start Wed Apr 1 2020 00:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86799 * 119.99841 * 2 1 4 4 H 1.48489 * 109.47011 * 240.00072 * 3 2 1 5 5 H 1.48505 * 109.46770 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.46868 * 119.99781 * 3 2 1 7 7 C 1.38655 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00058 * 180.02562 * 7 2 1 9 9 O 1.34835 * 119.99914 * 359.97438 * 7 2 1 10 10 C 1.35747 * 116.99725 * 185.05122 * 9 7 2 11 11 C 1.38881 * 120.07177 * 354.44883 * 10 9 7 12 12 C 1.38095 * 119.93247 * 180.02562 * 11 10 9 13 13 C 1.38306 * 120.07017 * 0.02567 * 12 11 10 14 14 C 1.50695 * 119.93299 * 179.97438 * 13 12 11 15 15 N 1.46506 * 109.47219 * 89.99559 * 14 13 12 16 16 C 1.34770 * 119.99831 * 179.97438 * 15 14 13 17 17 O 1.21580 * 120.00315 * 0.02562 * 16 15 14 18 18 N 1.34784 * 119.99902 * 180.02562 * 16 15 14 19 19 C 1.46497 * 120.00161 * 185.03822 * 18 16 15 20 20 C 1.52996 * 110.05601 * 293.79992 * 19 18 16 21 21 O 1.42902 * 109.47059 * 306.55472 * 20 19 18 22 22 C 1.53876 * 110.03041 * 55.21373 * 19 18 16 23 23 C 1.54264 * 106.59686 * 119.28530 * 22 19 18 24 24 C 1.54888 * 104.19729 * 336.39049 * 23 22 19 25 25 C 1.54267 * 110.03198 * 172.38066 * 19 18 16 26 26 C 1.38299 * 120.13495 * 0.24611 * 13 12 11 27 27 C 1.38105 * 120.07140 * 359.45287 * 26 13 12 28 28 H 0.96990 * 120.00283 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.03290 * 359.97438 * 11 10 9 30 30 H 1.08004 * 119.96745 * 180.02562 * 12 11 10 31 31 H 1.08998 * 109.46906 * 329.99969 * 14 13 12 32 32 H 1.08999 * 109.47124 * 209.99938 * 14 13 12 33 33 H 0.97001 * 119.99825 * 0.02562 * 15 14 13 34 34 H 0.96998 * 120.00010 * 5.03615 * 18 16 15 35 35 H 1.08997 * 109.47218 * 66.55559 * 20 19 18 36 36 H 1.08999 * 109.47364 * 186.55779 * 20 19 18 37 37 H 0.96702 * 114.00258 * 179.97438 * 21 20 19 38 38 H 1.09002 * 110.03125 * 238.56841 * 22 19 18 39 39 H 1.09000 * 110.03530 * 0.02562 * 22 19 18 40 40 H 1.09008 * 110.48689 * 95.06708 * 23 22 19 41 41 H 1.09008 * 110.48809 * 217.70715 * 23 22 19 42 42 H 1.09005 * 110.75408 * 279.62281 * 24 23 22 43 43 H 1.08999 * 110.75912 * 156.26055 * 24 23 22 44 44 H 1.08997 * 110.48493 * 23.00117 * 25 19 18 45 45 H 1.08995 * 110.48740 * 145.64752 * 25 19 18 46 46 H 1.08005 * 119.96672 * 179.70448 * 26 13 12 47 47 H 1.07999 * 120.03681 * 180.26986 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1032 1.6964 -1.2124 5 1 1.2844 2.7464 0.0006 6 1 3.1032 1.6964 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0001 9 8 1.3347 -2.3685 -0.0005 10 6 2.0701 -3.5046 0.1054 11 6 3.4573 -3.4395 0.0915 12 6 4.2025 -4.5971 0.1989 13 6 3.5689 -5.8205 0.3198 14 6 4.3852 -7.0819 0.4363 15 7 4.6574 -7.3588 1.8489 16 6 5.3761 -8.4446 2.1964 17 8 5.7989 -9.1942 1.3377 18 7 5.6261 -8.6996 3.4961 19 6 6.4985 -9.8159 3.8690 20 6 5.8435 -11.1443 3.4855 21 8 4.5309 -11.2078 4.0469 22 6 7.8606 -9.6777 3.1666 23 6 8.9216 -9.5661 4.2808 24 6 8.1326 -9.0396 5.5053 25 6 6.7793 -9.7834 5.3855 26 6 2.1876 -5.8892 0.3283 27 6 1.4367 -4.7345 0.2275 28 1 -0.4850 0.8399 0.0004 29 1 3.9527 -2.4846 -0.0041 30 1 5.2814 -4.5472 0.1886 31 1 5.3272 -6.9556 -0.0973 32 1 3.8310 -7.9146 0.0030 33 1 4.3198 -6.7609 2.5341 34 1 5.2284 -8.1440 4.1846 35 1 5.7784 -11.2173 2.3999 36 1 6.4432 -11.9694 3.8698 37 1 4.0552 -12.0248 3.8435 38 1 8.0550 -10.5571 2.5526 39 1 7.8727 -8.7798 2.5487 40 1 9.3527 -10.5438 4.4964 41 1 9.7008 -8.8589 3.9962 42 1 7.9882 -7.9613 5.4373 43 1 8.6382 -9.3048 6.4338 44 1 5.9950 -9.2348 5.9070 45 1 6.8644 -10.7961 5.7795 46 1 1.6956 -6.8465 0.4180 47 1 0.3581 -4.7884 0.2386 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178151435.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:55 Heat of formation + Delta-G solvation = -89.038896 kcal Electronic energy + Delta-G solvation = -28196.658431 eV Core-core repulsion = 24151.769591 eV Total energy + Delta-G solvation = -4044.888839 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 5.06 seconds Orbital eigenvalues (eV) -40.59744 -39.19589 -38.35317 -36.79262 -36.30104 -34.25962 -33.52517 -32.34537 -30.29630 -30.12242 -29.13302 -28.81570 -25.84451 -24.81194 -24.35888 -22.03750 -21.42364 -21.06695 -20.58100 -19.55470 -18.26692 -18.04154 -17.50593 -17.03936 -16.47771 -15.81221 -15.36351 -15.15135 -14.84469 -14.65883 -14.62809 -14.42365 -13.99574 -13.79663 -13.69747 -13.47348 -13.31527 -12.79149 -12.76408 -12.57700 -12.26906 -11.94057 -11.66576 -11.55838 -11.44208 -11.38900 -11.34230 -11.13853 -10.93530 -10.86908 -10.77639 -10.67893 -10.49807 -10.34034 -9.79318 -9.42059 -9.15165 -8.90127 -8.67867 -8.26789 -7.31593 -6.52173 -4.11198 2.05572 2.14644 2.90001 3.09297 3.10731 3.13106 3.32986 3.90047 3.90963 4.18693 4.31846 4.39548 4.60002 4.64628 4.96737 5.02698 5.13506 5.15058 5.18463 5.20854 5.26090 5.28819 5.39176 5.47235 5.50203 5.61028 5.63197 5.69085 5.74747 5.81947 5.84552 5.93212 5.98624 6.07709 6.13626 6.37088 6.58989 6.61198 6.68369 6.82124 6.94508 7.04987 7.18104 7.29616 7.36290 7.42310 7.73103 7.92464 8.15124 8.73514 8.93017 9.61475 10.65321 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019383 B = 0.002066 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.184759 B =13547.994027 C =14189.543708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.394 4.394 8 H 0.093 0.907 9 O -0.174 6.174 10 C 0.160 3.840 11 C -0.237 4.237 12 C -0.050 4.050 13 C -0.213 4.213 14 C 0.199 3.801 15 N -0.739 5.739 16 C 0.705 3.295 17 O -0.598 6.598 18 N -0.731 5.731 19 C 0.199 3.801 20 C 0.067 3.933 21 O -0.567 6.567 22 C -0.119 4.119 23 C -0.126 4.126 24 C -0.127 4.127 25 C -0.118 4.118 26 C -0.053 4.053 27 C -0.196 4.196 28 H 0.272 0.728 29 H 0.128 0.872 30 H 0.108 0.892 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.396 0.604 34 H 0.395 0.605 35 H 0.066 0.934 36 H 0.046 0.954 37 H 0.376 0.624 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.112 0.888 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.998 -19.039 10.140 25.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.470 4.470 8 H 0.110 0.890 9 O -0.076 6.076 10 C 0.106 3.894 11 C -0.257 4.257 12 C -0.069 4.069 13 C -0.215 4.215 14 C 0.077 3.923 15 N -0.394 5.394 16 C 0.405 3.595 17 O -0.478 6.478 18 N -0.386 5.386 19 C 0.111 3.889 20 C -0.012 4.012 21 O -0.372 6.372 22 C -0.157 4.157 23 C -0.164 4.164 24 C -0.164 4.164 25 C -0.156 4.156 26 C -0.072 4.072 27 C -0.215 4.215 28 H 0.082 0.918 29 H 0.145 0.855 30 H 0.126 0.874 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.230 0.770 34 H 0.229 0.771 35 H 0.084 0.916 36 H 0.064 0.936 37 H 0.222 0.778 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.093 0.907 45 H 0.098 0.902 46 H 0.130 0.870 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 14.122 -18.891 9.510 25.431 hybrid contribution -0.080 0.851 0.349 0.923 sum 14.042 -18.040 9.859 24.896 Atomic orbital electron populations 1.70025 1.05996 1.27964 1.45434 1.25316 0.95860 0.98919 0.96367 0.85765 0.78718 0.79636 0.79245 1.19427 1.20216 1.19453 1.21305 0.91830 0.80752 1.53090 0.88993 1.83980 1.34470 1.11540 1.77623 1.19440 0.90325 0.88048 0.91636 1.21153 0.93769 0.98938 1.11799 1.20642 0.98357 0.91624 0.96279 1.19238 0.93566 0.93693 1.14968 1.19789 0.98097 0.94445 0.80013 1.45512 1.57631 1.26762 1.09473 1.15975 0.79079 0.81654 0.82753 1.90857 1.57851 1.49772 1.49286 1.45167 1.53338 1.34238 1.05905 1.20749 0.89039 0.84715 0.94375 1.22750 0.83714 0.96030 0.98703 1.86459 1.28731 1.44307 1.77683 1.22424 0.92099 1.03577 0.97612 1.22414 0.97739 1.01154 0.95098 1.22545 0.95450 1.00237 0.98192 1.22591 0.97697 1.01660 0.93690 1.20541 0.92802 0.96807 0.97082 1.20219 0.99662 0.90253 1.11368 0.91838 0.85463 0.87431 0.91915 0.91905 0.76999 0.77087 0.91629 0.93569 0.77827 0.90961 0.90386 0.91554 0.91430 0.91241 0.91300 0.90719 0.90203 0.86976 0.86406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.75 13.67 55.48 0.76 -23.99 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 3 Si 0.94 20.06 29.55 -169.99 -5.02 15.04 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.39 -10.74 9.49 30.89 0.29 -10.44 16 8 H 0.09 2.31 5.20 -52.49 -0.27 2.03 16 9 O -0.17 -4.83 9.76 0.04 0.00 -4.83 16 10 C 0.16 3.74 6.65 -39.11 -0.26 3.48 16 11 C -0.24 -4.94 9.17 -39.40 -0.36 -5.30 16 12 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 13 C -0.21 -3.47 5.25 -104.58 -0.55 -4.01 16 14 C 0.20 2.88 5.80 -5.19 -0.03 2.85 16 15 N -0.74 -9.66 5.55 -66.41 -0.37 -10.02 16 16 C 0.71 9.63 7.60 -86.92 -0.66 8.97 16 17 O -0.60 -9.90 13.63 5.29 0.07 -9.83 16 18 N -0.73 -7.82 4.85 -51.37 -0.25 -8.07 16 19 C 0.20 1.89 0.70 -130.70 -0.09 1.80 16 20 C 0.07 0.65 5.42 37.16 0.20 0.85 16 21 O -0.57 -5.59 13.26 -35.23 -0.47 -6.05 16 22 C -0.12 -1.14 5.19 -25.61 -0.13 -1.27 16 23 C -0.13 -0.91 6.83 -25.07 -0.17 -1.08 16 24 C -0.13 -0.85 6.91 -24.74 -0.17 -1.02 16 25 C -0.12 -0.88 5.90 -25.07 -0.15 -1.03 16 26 C -0.05 -0.91 9.69 -39.61 -0.38 -1.30 16 27 C -0.20 -3.98 9.99 -39.39 -0.39 -4.37 16 28 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.13 2.66 5.64 -52.49 -0.30 2.37 16 30 H 0.11 1.64 8.06 -52.48 -0.42 1.21 16 31 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 32 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 33 H 0.40 4.68 8.48 -40.82 -0.35 4.34 16 34 H 0.40 3.58 8.25 -40.82 -0.34 3.24 16 35 H 0.07 0.79 6.68 -51.93 -0.35 0.45 16 36 H 0.05 0.35 8.00 -51.93 -0.42 -0.06 16 37 H 0.38 2.26 9.12 45.56 0.42 2.67 16 38 H 0.07 0.71 7.67 -51.93 -0.40 0.31 16 39 H 0.08 0.93 6.92 -51.93 -0.36 0.57 16 40 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 41 H 0.07 0.48 8.14 -51.92 -0.42 0.05 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.07 0.55 7.69 -51.93 -0.40 0.15 16 45 H 0.08 0.54 7.76 -51.93 -0.40 0.14 16 46 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 47 H 0.12 2.33 8.06 -52.49 -0.42 1.90 16 LS Contribution 384.00 15.07 5.79 5.79 Total: -1.00 -32.41 384.00 -8.92 -41.33 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -6.09 Total: 12.79 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: -3.34 Total: -12.15 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: 0.14 Total: -42.08 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.39 Total: -20.71 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.41 -8.92 -41.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178151435.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.709 kcal (2) G-P(sol) polarization free energy of solvation -32.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.06 seconds