Wall clock time and date at job start Wed Apr 1 2020 00:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86799 * 119.99841 * 2 1 4 4 H 1.48489 * 109.47011 * 240.00072 * 3 2 1 5 5 H 1.48505 * 109.46770 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.46868 * 119.99781 * 3 2 1 7 7 C 1.38655 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00058 * 180.02562 * 7 2 1 9 9 O 1.34835 * 119.99914 * 359.97438 * 7 2 1 10 10 C 1.35747 * 116.99725 * 185.05122 * 9 7 2 11 11 C 1.38881 * 120.07177 * 354.44883 * 10 9 7 12 12 C 1.38095 * 119.93247 * 180.02562 * 11 10 9 13 13 C 1.38306 * 120.07017 * 0.02567 * 12 11 10 14 14 C 1.50695 * 119.93299 * 179.97438 * 13 12 11 15 15 N 1.46506 * 109.47219 * 89.99559 * 14 13 12 16 16 C 1.34770 * 119.99831 * 179.97438 * 15 14 13 17 17 O 1.21580 * 120.00315 * 0.02562 * 16 15 14 18 18 N 1.34784 * 119.99902 * 180.02562 * 16 15 14 19 19 C 1.46497 * 120.00161 * 185.03822 * 18 16 15 20 20 C 1.52996 * 110.05601 * 293.79992 * 19 18 16 21 21 O 1.42902 * 109.47059 * 306.55472 * 20 19 18 22 22 C 1.53876 * 110.03041 * 55.21373 * 19 18 16 23 23 C 1.54264 * 106.59686 * 119.28530 * 22 19 18 24 24 C 1.54888 * 104.19729 * 336.39049 * 23 22 19 25 25 C 1.54267 * 110.03198 * 172.38066 * 19 18 16 26 26 C 1.38299 * 120.13495 * 0.24611 * 13 12 11 27 27 C 1.38105 * 120.07140 * 359.45287 * 26 13 12 28 28 H 0.96990 * 120.00283 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.03290 * 359.97438 * 11 10 9 30 30 H 1.08004 * 119.96745 * 180.02562 * 12 11 10 31 31 H 1.08998 * 109.46906 * 329.99969 * 14 13 12 32 32 H 1.08999 * 109.47124 * 209.99938 * 14 13 12 33 33 H 0.97001 * 119.99825 * 0.02562 * 15 14 13 34 34 H 0.96998 * 120.00010 * 5.03615 * 18 16 15 35 35 H 1.08997 * 109.47218 * 66.55559 * 20 19 18 36 36 H 1.08999 * 109.47364 * 186.55779 * 20 19 18 37 37 H 0.96702 * 114.00258 * 179.97438 * 21 20 19 38 38 H 1.09002 * 110.03125 * 238.56841 * 22 19 18 39 39 H 1.09000 * 110.03530 * 0.02562 * 22 19 18 40 40 H 1.09008 * 110.48689 * 95.06708 * 23 22 19 41 41 H 1.09008 * 110.48809 * 217.70715 * 23 22 19 42 42 H 1.09005 * 110.75408 * 279.62281 * 24 23 22 43 43 H 1.08999 * 110.75912 * 156.26055 * 24 23 22 44 44 H 1.08997 * 110.48493 * 23.00117 * 25 19 18 45 45 H 1.08995 * 110.48740 * 145.64752 * 25 19 18 46 46 H 1.08005 * 119.96672 * 179.70448 * 26 13 12 47 47 H 1.07999 * 120.03681 * 180.26986 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1032 1.6964 -1.2124 5 1 1.2844 2.7464 0.0006 6 1 3.1032 1.6964 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0001 9 8 1.3347 -2.3685 -0.0005 10 6 2.0701 -3.5046 0.1054 11 6 3.4573 -3.4395 0.0915 12 6 4.2025 -4.5971 0.1989 13 6 3.5689 -5.8205 0.3198 14 6 4.3852 -7.0819 0.4363 15 7 4.6574 -7.3588 1.8489 16 6 5.3761 -8.4446 2.1964 17 8 5.7989 -9.1942 1.3377 18 7 5.6261 -8.6996 3.4961 19 6 6.4985 -9.8159 3.8690 20 6 5.8435 -11.1443 3.4855 21 8 4.5309 -11.2078 4.0469 22 6 7.8606 -9.6777 3.1666 23 6 8.9216 -9.5661 4.2808 24 6 8.1326 -9.0396 5.5053 25 6 6.7793 -9.7834 5.3855 26 6 2.1876 -5.8892 0.3283 27 6 1.4367 -4.7345 0.2275 28 1 -0.4850 0.8399 0.0004 29 1 3.9527 -2.4846 -0.0041 30 1 5.2814 -4.5472 0.1886 31 1 5.3272 -6.9556 -0.0973 32 1 3.8310 -7.9146 0.0030 33 1 4.3198 -6.7609 2.5341 34 1 5.2284 -8.1440 4.1846 35 1 5.7784 -11.2173 2.3999 36 1 6.4432 -11.9694 3.8698 37 1 4.0552 -12.0248 3.8435 38 1 8.0550 -10.5571 2.5526 39 1 7.8727 -8.7798 2.5487 40 1 9.3527 -10.5438 4.4964 41 1 9.7008 -8.8589 3.9962 42 1 7.9882 -7.9613 5.4373 43 1 8.6382 -9.3048 6.4338 44 1 5.9950 -9.2348 5.9070 45 1 6.8644 -10.7961 5.7795 46 1 1.6956 -6.8465 0.4180 47 1 0.3581 -4.7884 0.2386 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178151435.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:54 Heat of formation + Delta-G solvation = -113.357514 kcal Electronic energy + Delta-G solvation = -28197.712965 eV Core-core repulsion = 24151.769591 eV Total energy + Delta-G solvation = -4045.943374 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.53250 -40.81419 -39.36391 -38.37846 -37.00425 -35.53194 -34.48075 -34.20337 -31.84644 -31.42187 -29.87559 -29.66801 -27.62434 -26.16981 -25.20684 -23.64671 -22.48433 -22.03833 -21.68208 -20.43223 -19.87344 -19.26829 -18.80044 -18.23565 -17.39991 -16.73364 -16.49735 -16.37804 -16.13258 -15.95484 -15.85152 -15.52970 -15.48594 -15.18444 -14.90070 -14.71539 -14.37629 -14.19054 -14.07804 -13.68445 -13.37011 -13.29099 -13.00903 -12.79394 -12.52822 -12.38315 -12.27183 -12.21712 -12.14415 -12.00144 -11.97922 -11.80448 -11.45001 -11.29674 -11.20540 -10.81522 -10.69122 -10.19950 -9.82030 -9.66435 -9.01828 -8.48158 -6.16578 0.53200 0.57504 1.35718 1.45384 1.51658 1.88416 2.17366 2.26594 2.80486 3.12828 3.24319 3.42299 3.48310 3.67717 3.72341 3.89424 4.03460 4.04526 4.17295 4.32584 4.44230 4.47489 4.51557 4.54125 4.56714 4.65315 4.74559 4.78036 4.80944 4.86650 4.91483 5.04106 5.07605 5.12449 5.14172 5.23586 5.26506 5.30209 5.46534 5.51250 5.56696 5.68715 5.75909 5.76485 6.01216 6.08840 6.16363 6.86125 6.96396 7.17338 7.69339 7.75584 8.74428 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019383 B = 0.002066 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.184759 B =13547.994027 C =14189.543708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.022 4.022 3 Si 1.018 2.982 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.415 4.415 8 H 0.104 0.896 9 O -0.229 6.229 10 C 0.123 3.877 11 C -0.243 4.243 12 C -0.045 4.045 13 C -0.181 4.181 14 C 0.207 3.793 15 N -0.735 5.735 16 C 0.703 3.297 17 O -0.628 6.628 18 N -0.721 5.721 19 C 0.189 3.811 20 C 0.070 3.930 21 O -0.581 6.581 22 C -0.117 4.117 23 C -0.122 4.122 24 C -0.123 4.123 25 C -0.112 4.112 26 C -0.043 4.043 27 C -0.205 4.205 28 H 0.273 0.727 29 H 0.121 0.879 30 H 0.138 0.862 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.404 0.596 34 H 0.404 0.596 35 H 0.037 0.963 36 H 0.069 0.931 37 H 0.391 0.609 38 H 0.065 0.935 39 H 0.051 0.949 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.091 0.909 46 H 0.145 0.855 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.539 -20.856 11.690 29.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.490 4.490 8 H 0.121 0.879 9 O -0.135 6.135 10 C 0.071 3.929 11 C -0.262 4.262 12 C -0.063 4.063 13 C -0.182 4.182 14 C 0.083 3.917 15 N -0.390 5.390 16 C 0.403 3.597 17 O -0.509 6.509 18 N -0.376 5.376 19 C 0.103 3.897 20 C -0.009 4.009 21 O -0.388 6.388 22 C -0.156 4.156 23 C -0.160 4.160 24 C -0.160 4.160 25 C -0.150 4.150 26 C -0.062 4.062 27 C -0.224 4.224 28 H 0.082 0.918 29 H 0.139 0.861 30 H 0.156 0.844 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.239 0.761 34 H 0.240 0.760 35 H 0.055 0.945 36 H 0.087 0.913 37 H 0.240 0.760 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.104 0.896 44 H 0.095 0.905 45 H 0.110 0.890 46 H 0.163 0.837 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 16.690 -20.769 11.097 28.863 hybrid contribution -0.744 0.992 -0.108 1.245 sum 15.947 -19.777 10.989 27.680 Atomic orbital electron populations 1.70173 1.08025 1.28941 1.48527 1.26590 0.96832 1.02764 0.95772 0.84656 0.77403 0.74290 0.79956 1.18192 1.19731 1.18086 1.21797 0.92574 0.81346 1.53333 0.87916 1.83950 1.36025 1.12646 1.80843 1.19985 0.91636 0.87943 0.93288 1.21239 0.92985 1.00048 1.11953 1.20927 0.99764 0.90702 0.94912 1.19503 0.93440 0.94182 1.11087 1.19655 0.97867 0.93147 0.80995 1.45284 1.57765 1.26968 1.09016 1.16075 0.78864 0.81347 0.83391 1.90846 1.58990 1.50730 1.50383 1.45136 1.52927 1.34467 1.05051 1.20993 0.88624 0.84195 0.95937 1.22687 0.84185 0.96933 0.97070 1.86410 1.28951 1.45766 1.77634 1.22371 0.93225 1.01916 0.98063 1.22407 0.97075 1.02101 0.94367 1.22536 0.95023 0.99816 0.98620 1.22574 0.98100 1.02530 0.91761 1.20865 0.93107 0.96925 0.95286 1.20443 1.00062 0.90397 1.11479 0.91789 0.86118 0.84395 0.91565 0.91545 0.76074 0.76024 0.94454 0.91300 0.76039 0.91625 0.93043 0.90080 0.91377 0.91755 0.89563 0.90476 0.89050 0.83733 0.86692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.67 13.67 21.61 0.30 -55.37 16 2 C -0.02 -1.21 5.49 84.83 0.47 -0.75 16 3 Si 1.02 42.02 29.55 68.60 2.03 44.05 16 4 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 5 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 6 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 7 C -0.41 -23.62 9.49 67.92 0.64 -22.98 16 8 H 0.10 5.33 5.20 -2.91 -0.02 5.32 16 9 O -0.23 -13.45 9.76 -22.76 -0.22 -13.67 16 10 C 0.12 5.89 6.65 22.58 0.15 6.04 16 11 C -0.24 -10.10 9.17 22.39 0.21 -9.89 16 12 C -0.04 -1.45 9.69 22.25 0.22 -1.24 16 13 C -0.18 -5.37 5.25 -19.84 -0.10 -5.47 16 14 C 0.21 5.32 5.80 85.63 0.50 5.82 16 15 N -0.73 -17.22 5.55 -482.30 -2.68 -19.90 16 16 C 0.70 17.88 7.60 179.05 1.36 19.24 16 17 O -0.63 -20.00 13.63 -3.97 -0.05 -20.06 16 18 N -0.72 -14.00 4.85 -434.71 -2.11 -16.11 16 19 C 0.19 3.23 0.70 4.33 0.00 3.24 16 20 C 0.07 1.24 5.42 71.98 0.39 1.63 16 21 O -0.58 -10.18 13.26 -148.98 -1.98 -12.16 16 22 C -0.12 -2.10 5.19 31.32 0.16 -1.93 16 23 C -0.12 -1.47 6.83 31.67 0.22 -1.26 16 24 C -0.12 -1.28 6.91 31.88 0.22 -1.06 16 25 C -0.11 -1.33 5.90 31.67 0.19 -1.14 16 26 C -0.04 -1.38 9.69 22.25 0.22 -1.17 16 27 C -0.20 -8.35 9.99 22.39 0.22 -8.12 16 28 H 0.27 15.19 8.31 -92.72 -0.77 14.42 16 29 H 0.12 5.11 5.64 -2.91 -0.02 5.10 16 30 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 31 H 0.07 1.73 8.08 -2.39 -0.02 1.71 16 32 H 0.07 1.74 8.08 -2.39 -0.02 1.72 16 33 H 0.40 8.35 8.48 -92.71 -0.79 7.56 16 34 H 0.40 6.36 8.25 -92.71 -0.76 5.59 16 35 H 0.04 0.88 6.68 -2.39 -0.02 0.86 16 36 H 0.07 0.89 8.00 -2.39 -0.02 0.87 16 37 H 0.39 3.92 9.12 -74.06 -0.68 3.24 16 38 H 0.06 1.23 7.67 -2.39 -0.02 1.21 16 39 H 0.05 1.19 6.92 -2.39 -0.02 1.18 16 40 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 41 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 42 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 43 H 0.09 0.64 8.14 -2.39 -0.02 0.63 16 44 H 0.08 0.90 7.69 -2.39 -0.02 0.89 16 45 H 0.09 0.91 7.76 -2.39 -0.02 0.89 16 46 H 0.14 3.74 8.06 -2.91 -0.02 3.71 16 47 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 Total: -1.00 -74.56 384.00 -0.86 -75.42 By element: Atomic # 1 Polarization: 38.04 SS G_CDS: -1.20 Total: 36.84 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: 5.05 Total: -19.05 kcal Atomic # 7 Polarization: -86.88 SS G_CDS: -4.49 Total: -91.38 kcal Atomic # 8 Polarization: -43.64 SS G_CDS: -2.25 Total: -45.89 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -74.56 -0.86 -75.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178151435.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.939 kcal (2) G-P(sol) polarization free energy of solvation -74.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds