Wall clock time and date at job start Tue Mar 31 2020 23:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09009 * 109.46866 * 305.00034 * 10 9 7 12 12 N 1.46500 * 109.47466 * 64.99479 * 10 9 7 13 13 C 1.34771 * 120.00556 * 205.00158 * 12 10 9 14 14 O 1.21596 * 119.99804 * 0.02562 * 13 12 10 15 15 N 1.34775 * 120.00181 * 179.97438 * 13 12 10 16 16 C 1.46507 * 119.99725 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.46658 * 180.02562 * 16 15 13 18 18 O 1.42902 * 110.45706 * 302.60550 * 17 16 15 19 19 C 1.54505 * 110.51006 * 180.02562 * 17 16 15 20 20 C 1.54479 * 104.06465 * 241.35625 * 19 17 16 21 21 O 1.44428 * 104.80040 * 336.01929 * 20 19 17 22 22 C 1.44428 * 105.27679 * 40.51025 * 21 20 19 23 23 C 1.50700 * 109.47144 * 185.00130 * 10 9 7 24 24 C 1.38233 * 119.99377 * 279.72159 * 23 10 9 25 25 C 1.38243 * 119.99516 * 179.74466 * 24 23 10 26 26 C 1.38237 * 119.99855 * 0.53107 * 25 24 23 27 27 C 1.38233 * 120.00091 * 359.74908 * 26 25 24 28 28 C 1.38228 * 120.00326 * 99.99831 * 23 10 9 29 29 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 31 31 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 32 32 H 0.97002 * 119.99373 * 25.00408 * 12 10 9 33 33 H 0.96998 * 120.00237 * 0.02562 * 15 13 12 34 34 H 1.08995 * 109.47163 * 300.00364 * 16 15 13 35 35 H 1.09001 * 109.46789 * 60.00356 * 16 15 13 36 36 H 0.96698 * 113.99809 * 59.29872 * 18 17 16 37 37 H 1.09006 * 110.51019 * 359.97438 * 19 17 16 38 38 H 1.08995 * 110.51671 * 122.70873 * 19 17 16 39 39 H 1.09000 * 110.37857 * 94.84457 * 20 19 17 40 40 H 1.08998 * 110.37166 * 217.08122 * 20 19 17 41 41 H 1.08998 * 110.37348 * 200.65457 * 22 21 20 42 42 H 1.08999 * 110.36714 * 78.32079 * 22 21 20 43 43 H 1.07995 * 120.00514 * 359.97438 * 24 23 10 44 44 H 1.07993 * 119.99811 * 180.29769 * 25 24 23 45 45 H 1.07998 * 119.99873 * 179.76597 * 26 25 24 46 46 H 1.07994 * 120.00081 * 180.02562 * 27 26 25 47 47 H 1.08001 * 119.99928 * 0.02562 * 28 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9293 -3.5515 -0.8518 12 7 3.0061 -3.6596 1.2414 13 6 4.2307 -4.2205 1.2868 14 8 4.7042 -4.7283 0.2885 15 7 4.9310 -4.2177 2.4383 16 6 6.2620 -4.8279 2.4877 17 6 6.8339 -4.6905 3.9001 18 8 6.8843 -3.3157 4.2870 19 6 8.2397 -5.3265 3.9792 20 6 8.0834 -6.4541 5.0235 21 8 6.9579 -6.0524 5.8346 22 6 5.9944 -5.5089 4.9060 23 6 1.4956 -4.9631 -0.1402 24 6 0.8988 -5.5305 0.9701 25 6 0.2068 -6.7212 0.8501 26 6 0.1211 -7.3501 -0.3780 27 6 0.7228 -6.7856 -1.4871 28 6 1.4099 -5.5920 -1.3682 29 1 -0.4850 0.8401 -0.0004 30 1 0.6242 -2.5609 0.8844 31 1 0.6244 -2.5529 -0.8956 32 1 2.6285 -3.2543 2.0376 33 1 4.5535 -3.8123 3.2346 34 1 6.1876 -5.8837 2.2273 35 1 6.9191 -4.3242 1.7786 36 1 6.0239 -2.8744 4.2835 37 1 8.5271 -5.7393 3.0122 38 1 8.9724 -4.5931 4.3159 39 1 7.8752 -7.4030 4.5292 40 1 8.9833 -6.5340 5.6332 41 1 5.2889 -4.8615 5.4268 42 1 5.4660 -6.3128 4.3936 43 1 0.9699 -5.0417 1.9305 44 1 -0.2636 -7.1621 1.7165 45 1 -0.4163 -8.2822 -0.4710 46 1 0.6555 -7.2766 -2.4466 47 1 1.8804 -5.1511 -2.2346 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179633717.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:31 Heat of formation + Delta-G solvation = -102.990891 kcal Electronic energy + Delta-G solvation = -29114.459628 eV Core-core repulsion = 25068.965785 eV Total energy + Delta-G solvation = -4045.493843 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.53439 -39.63657 -38.57460 -36.74080 -35.31365 -34.07381 -32.76524 -31.90739 -30.94607 -30.45503 -29.26592 -28.67644 -25.99217 -24.71779 -23.27062 -22.30001 -21.96377 -20.88290 -20.81345 -19.84331 -18.41390 -17.43250 -16.91208 -16.58740 -16.20024 -16.13161 -15.65032 -15.50050 -15.13371 -14.69380 -14.62577 -14.56973 -13.89816 -13.78919 -13.47108 -13.35528 -13.07052 -12.99404 -12.80418 -12.58628 -12.50468 -12.11703 -11.93521 -11.80912 -11.56215 -11.16269 -11.14370 -10.92571 -10.73640 -10.64516 -10.55544 -10.47519 -9.91934 -9.80066 -9.78293 -9.32927 -9.07663 -8.54705 -8.47515 -8.36690 -8.18732 -6.10919 -4.14453 1.77357 1.79957 2.93384 3.27123 3.32686 3.35623 3.53762 3.59834 3.76167 4.09801 4.19976 4.33208 4.38083 4.46884 4.65332 4.75787 4.90598 5.16343 5.25683 5.25875 5.26768 5.28382 5.35521 5.36730 5.39031 5.52803 5.54760 5.61706 5.70261 5.90239 5.93647 6.13077 6.33822 6.34828 6.41354 6.48838 6.58386 6.83809 6.85034 6.91325 7.05571 7.19302 7.28386 7.40223 7.48698 7.64312 7.85869 8.23724 8.41147 8.91379 9.00116 9.50674 10.99519 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.008025 B = 0.003906 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3488.259995 B = 7167.087012 C = 9855.596685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.024 3.976 10 C 0.202 3.798 11 H 0.087 0.913 12 N -0.714 5.714 13 C 0.705 3.295 14 O -0.594 6.594 15 N -0.755 5.755 16 C 0.123 3.877 17 C 0.091 3.909 18 O -0.543 6.543 19 C -0.141 4.141 20 C 0.045 3.955 21 O -0.369 6.369 22 C 0.021 3.979 23 C -0.071 4.071 24 C -0.107 4.107 25 C -0.126 4.126 26 C -0.135 4.135 27 C -0.123 4.123 28 C -0.108 4.108 29 H 0.262 0.738 30 H 0.024 0.976 31 H 0.035 0.965 32 H 0.397 0.603 33 H 0.390 0.610 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.379 0.621 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.064 0.936 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.073 0.927 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.113 0.887 46 H 0.116 0.884 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.018 -13.605 8.172 18.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.076 0.924 9 C -0.013 4.013 10 C 0.097 3.903 11 H 0.105 0.895 12 N -0.366 5.366 13 C 0.405 3.595 14 O -0.472 6.472 15 N -0.413 5.413 16 C -0.002 4.002 17 C 0.049 3.951 18 O -0.350 6.350 19 C -0.179 4.179 20 C -0.032 4.032 21 O -0.287 6.287 22 C -0.056 4.056 23 C -0.072 4.072 24 C -0.125 4.125 25 C -0.144 4.144 26 C -0.154 4.154 27 C -0.141 4.141 28 C -0.126 4.126 29 H 0.072 0.928 30 H 0.042 0.958 31 H 0.053 0.947 32 H 0.231 0.769 33 H 0.223 0.777 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.227 0.773 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.082 0.918 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.091 0.909 43 H 0.133 0.867 44 H 0.132 0.868 45 H 0.131 0.869 46 H 0.134 0.866 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 9.905 -14.093 7.508 18.790 hybrid contribution -0.602 1.513 0.414 1.681 sum 9.303 -12.579 7.922 17.537 Atomic orbital electron populations 1.69950 1.06016 1.26929 1.50189 1.24985 0.94789 0.99207 0.95124 0.86653 0.79539 0.83065 0.78705 1.20228 1.21322 1.20289 1.21098 0.93047 0.90367 1.51365 0.92435 1.19391 0.93193 0.90146 0.98579 1.20133 0.92915 0.91728 0.85500 0.89547 1.45133 1.16049 1.60850 1.14607 1.15934 0.81180 0.79352 0.82993 1.90891 1.70624 1.51834 1.33897 1.45000 1.18813 1.65288 1.12200 1.21767 0.83520 0.99256 0.95667 1.22854 0.96251 0.83378 0.92586 1.86619 1.35740 1.22063 1.90542 1.22927 0.95634 0.98320 1.01059 1.23464 0.90540 0.96481 0.92732 1.89157 1.28169 1.81254 1.30136 1.24187 0.92440 0.97604 0.91402 1.20590 0.96712 0.96619 0.93282 1.20881 0.97632 0.95563 0.98458 1.21036 0.99929 0.96114 0.97310 1.20989 1.01099 1.00028 0.93244 1.21040 0.98577 0.96193 0.98286 1.21020 0.99069 0.95084 0.97458 0.92801 0.95769 0.94674 0.76948 0.77694 0.90676 0.90468 0.77270 0.88918 0.88770 0.91810 0.88589 0.88483 0.90873 0.86690 0.86820 0.86888 0.86633 0.86181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.27 13.29 55.43 0.74 -24.53 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.52 -13.53 8.84 -34.44 -0.30 -13.83 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.57 4.50 -27.88 -0.13 0.44 16 10 C 0.20 4.03 2.12 -69.08 -0.15 3.88 16 11 H 0.09 1.91 7.44 -51.92 -0.39 1.53 16 12 N -0.71 -12.28 4.02 -59.81 -0.24 -12.52 16 13 C 0.71 12.02 8.52 -86.92 -0.74 11.28 16 14 O -0.59 -12.45 16.01 5.28 0.08 -12.37 16 15 N -0.75 -9.20 5.18 -65.22 -0.34 -9.54 16 16 C 0.12 1.37 4.55 -4.04 -0.02 1.35 16 17 C 0.09 0.85 1.14 -89.05 -0.10 0.75 16 18 O -0.54 -5.69 13.00 -35.23 -0.46 -6.14 16 19 C -0.14 -1.16 6.54 -25.17 -0.16 -1.32 16 20 C 0.04 0.35 7.63 37.93 0.29 0.64 16 21 O -0.37 -3.96 11.65 -35.23 -0.41 -4.37 16 22 C 0.02 0.19 6.56 37.93 0.25 0.44 16 23 C -0.07 -1.29 4.91 -104.63 -0.51 -1.80 16 24 C -0.11 -1.76 9.33 -39.58 -0.37 -2.13 16 25 C -0.13 -1.84 10.05 -39.58 -0.40 -2.23 16 26 C -0.14 -1.91 10.05 -39.58 -0.40 -2.31 16 27 C -0.12 -1.84 10.05 -39.58 -0.40 -2.23 16 28 C -0.11 -1.86 9.67 -39.59 -0.38 -2.24 16 29 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.40 6.12 8.62 -40.82 -0.35 5.77 16 33 H 0.39 3.62 7.26 -40.82 -0.30 3.32 16 34 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.38 2.99 7.80 45.56 0.36 3.34 16 37 H 0.09 0.63 7.73 -51.93 -0.40 0.23 16 38 H 0.09 0.81 8.00 -51.93 -0.42 0.40 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.10 0.77 8.09 -51.93 -0.42 0.35 16 42 H 0.07 0.64 7.82 -51.93 -0.41 0.23 16 43 H 0.12 1.75 7.71 -52.49 -0.40 1.34 16 44 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 45 H 0.11 1.28 8.06 -52.49 -0.42 0.85 16 46 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 47 H 0.12 2.00 8.04 -52.49 -0.42 1.57 16 LS Contribution 391.42 15.07 5.90 5.90 Total: -1.00 -33.42 391.42 -9.86 -43.28 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -6.49 Total: 12.25 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -3.62 Total: -7.78 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 0.16 Total: -46.59 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.78 Total: -22.88 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.42 -9.86 -43.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179633717.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.707 kcal (2) G-P(sol) polarization free energy of solvation -33.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds