Wall clock time and date at job start Tue Mar 31 2020 23:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09009 * 109.46866 * 305.00034 * 10 9 7 12 12 N 1.46500 * 109.47466 * 64.99479 * 10 9 7 13 13 C 1.34771 * 120.00556 * 205.00158 * 12 10 9 14 14 O 1.21596 * 119.99804 * 0.02562 * 13 12 10 15 15 N 1.34775 * 120.00181 * 179.97438 * 13 12 10 16 16 C 1.46507 * 119.99725 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.46658 * 180.02562 * 16 15 13 18 18 O 1.42902 * 110.45706 * 302.60550 * 17 16 15 19 19 C 1.54505 * 110.51006 * 180.02562 * 17 16 15 20 20 C 1.54479 * 104.06465 * 241.35625 * 19 17 16 21 21 O 1.44428 * 104.80040 * 336.01929 * 20 19 17 22 22 C 1.44428 * 105.27679 * 40.51025 * 21 20 19 23 23 C 1.50700 * 109.47144 * 185.00130 * 10 9 7 24 24 C 1.38233 * 119.99377 * 279.72159 * 23 10 9 25 25 C 1.38243 * 119.99516 * 179.74466 * 24 23 10 26 26 C 1.38237 * 119.99855 * 0.53107 * 25 24 23 27 27 C 1.38233 * 120.00091 * 359.74908 * 26 25 24 28 28 C 1.38228 * 120.00326 * 99.99831 * 23 10 9 29 29 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 31 31 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 32 32 H 0.97002 * 119.99373 * 25.00408 * 12 10 9 33 33 H 0.96998 * 120.00237 * 0.02562 * 15 13 12 34 34 H 1.08995 * 109.47163 * 300.00364 * 16 15 13 35 35 H 1.09001 * 109.46789 * 60.00356 * 16 15 13 36 36 H 0.96698 * 113.99809 * 59.29872 * 18 17 16 37 37 H 1.09006 * 110.51019 * 359.97438 * 19 17 16 38 38 H 1.08995 * 110.51671 * 122.70873 * 19 17 16 39 39 H 1.09000 * 110.37857 * 94.84457 * 20 19 17 40 40 H 1.08998 * 110.37166 * 217.08122 * 20 19 17 41 41 H 1.08998 * 110.37348 * 200.65457 * 22 21 20 42 42 H 1.08999 * 110.36714 * 78.32079 * 22 21 20 43 43 H 1.07995 * 120.00514 * 359.97438 * 24 23 10 44 44 H 1.07993 * 119.99811 * 180.29769 * 25 24 23 45 45 H 1.07998 * 119.99873 * 179.76597 * 26 25 24 46 46 H 1.07994 * 120.00081 * 180.02562 * 27 26 25 47 47 H 1.08001 * 119.99928 * 0.02562 * 28 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9293 -3.5515 -0.8518 12 7 3.0061 -3.6596 1.2414 13 6 4.2307 -4.2205 1.2868 14 8 4.7042 -4.7283 0.2885 15 7 4.9310 -4.2177 2.4383 16 6 6.2620 -4.8279 2.4877 17 6 6.8339 -4.6905 3.9001 18 8 6.8843 -3.3157 4.2870 19 6 8.2397 -5.3265 3.9792 20 6 8.0834 -6.4541 5.0235 21 8 6.9579 -6.0524 5.8346 22 6 5.9944 -5.5089 4.9060 23 6 1.4956 -4.9631 -0.1402 24 6 0.8988 -5.5305 0.9701 25 6 0.2068 -6.7212 0.8501 26 6 0.1211 -7.3501 -0.3780 27 6 0.7228 -6.7856 -1.4871 28 6 1.4099 -5.5920 -1.3682 29 1 -0.4850 0.8401 -0.0004 30 1 0.6242 -2.5609 0.8844 31 1 0.6244 -2.5529 -0.8956 32 1 2.6285 -3.2543 2.0376 33 1 4.5535 -3.8123 3.2346 34 1 6.1876 -5.8837 2.2273 35 1 6.9191 -4.3242 1.7786 36 1 6.0239 -2.8744 4.2835 37 1 8.5271 -5.7393 3.0122 38 1 8.9724 -4.5931 4.3159 39 1 7.8752 -7.4030 4.5292 40 1 8.9833 -6.5340 5.6332 41 1 5.2889 -4.8615 5.4268 42 1 5.4660 -6.3128 4.3936 43 1 0.9699 -5.0417 1.9305 44 1 -0.2636 -7.1621 1.7165 45 1 -0.4163 -8.2822 -0.4710 46 1 0.6555 -7.2766 -2.4466 47 1 1.8804 -5.1511 -2.2346 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179633717.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:30 Heat of formation + Delta-G solvation = -127.551923 kcal Electronic energy + Delta-G solvation = -29115.524675 eV Core-core repulsion = 25068.965785 eV Total energy + Delta-G solvation = -4046.558890 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.53126 -40.78360 -39.79745 -37.61090 -36.79656 -35.25966 -34.70634 -32.89407 -32.09507 -31.65616 -30.55305 -29.88195 -27.15922 -26.23275 -24.01779 -23.76589 -23.34092 -22.15665 -21.64157 -21.24653 -19.63868 -18.68288 -18.21374 -17.72717 -17.44612 -17.07651 -16.76726 -16.55282 -16.48275 -16.16936 -15.83575 -15.78608 -15.06362 -14.91672 -14.77879 -14.43234 -14.16966 -14.14628 -14.10156 -13.76171 -13.63816 -13.44123 -13.37876 -12.91046 -12.69144 -12.64032 -12.45967 -12.43948 -12.14360 -11.87249 -11.85503 -11.57156 -11.34476 -11.32792 -11.25277 -10.64574 -10.57540 -10.35048 -9.77975 -9.71377 -9.49321 -8.19312 -6.29137 0.53162 0.58181 1.40509 1.42497 1.50027 1.72225 2.22805 2.40570 2.86149 2.96577 3.05564 3.14002 3.28253 3.42752 3.66075 3.74710 4.01979 4.05984 4.12290 4.22903 4.24205 4.34094 4.43463 4.47149 4.59140 4.63351 4.67600 4.68426 4.77985 4.79062 4.81118 4.90668 5.00611 5.14847 5.22077 5.30342 5.39176 5.44956 5.63169 5.64039 5.66395 5.70314 5.79272 5.86509 6.07281 6.17965 6.22669 6.59865 6.83486 7.13595 7.39873 7.64567 8.91110 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.008025 B = 0.003906 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3488.259995 B = 7167.087012 C = 9855.596685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.013 3.987 3 Si 0.954 3.046 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.528 4.528 8 H 0.053 0.947 9 C 0.039 3.961 10 C 0.219 3.781 11 H 0.055 0.945 12 N -0.710 5.710 13 C 0.704 3.296 14 O -0.635 6.635 15 N -0.735 5.735 16 C 0.127 3.873 17 C 0.098 3.902 18 O -0.557 6.557 19 C -0.142 4.142 20 C 0.042 3.958 21 O -0.392 6.392 22 C 0.022 3.978 23 C -0.097 4.097 24 C -0.119 4.119 25 C -0.125 4.125 26 C -0.130 4.130 27 C -0.124 4.124 28 C -0.134 4.134 29 H 0.264 0.736 30 H 0.014 0.986 31 H 0.004 0.996 32 H 0.405 0.595 33 H 0.406 0.594 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.388 0.612 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.110 0.890 41 H 0.107 0.893 42 H 0.078 0.922 43 H 0.122 0.878 44 H 0.146 0.854 45 H 0.150 0.850 46 H 0.142 0.858 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.298 -14.925 9.531 20.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.186 4.186 3 Si 0.780 3.220 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.566 4.566 8 H 0.071 0.929 9 C 0.001 3.999 10 C 0.113 3.887 11 H 0.073 0.927 12 N -0.363 5.363 13 C 0.404 3.596 14 O -0.516 6.516 15 N -0.393 5.393 16 C 0.002 3.998 17 C 0.056 3.944 18 O -0.365 6.365 19 C -0.180 4.180 20 C -0.034 4.034 21 O -0.311 6.311 22 C -0.055 4.055 23 C -0.098 4.098 24 C -0.137 4.137 25 C -0.143 4.143 26 C -0.148 4.148 27 C -0.142 4.142 28 C -0.152 4.152 29 H 0.073 0.927 30 H 0.032 0.968 31 H 0.022 0.978 32 H 0.241 0.759 33 H 0.243 0.757 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.238 0.762 37 H 0.124 0.876 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.128 0.872 41 H 0.125 0.875 42 H 0.096 0.904 43 H 0.140 0.860 44 H 0.163 0.837 45 H 0.168 0.832 46 H 0.160 0.840 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 10.197 -15.404 8.923 20.515 hybrid contribution -0.695 1.854 -0.025 1.980 sum 9.502 -13.550 8.898 18.790 Atomic orbital electron populations 1.70061 1.07430 1.27755 1.51303 1.25746 0.95522 1.02524 0.94830 0.85669 0.78350 0.79081 0.78909 1.20320 1.20963 1.19015 1.21363 0.92950 0.91572 1.50723 0.92890 1.19126 0.93244 0.91052 0.96451 1.19566 0.91670 0.91781 0.85644 0.92658 1.44900 1.16257 1.61143 1.13970 1.16035 0.80975 0.78955 0.83612 1.90862 1.71424 1.53562 1.35800 1.44787 1.18769 1.64436 1.11311 1.21821 0.82316 0.98945 0.96678 1.22816 0.97068 0.83193 0.91274 1.86610 1.36780 1.22656 1.90487 1.22985 0.94683 0.98393 1.01973 1.23645 0.90393 0.96732 0.92675 1.89133 1.29146 1.81500 1.31308 1.24225 0.92334 0.97789 0.91199 1.20476 0.98289 0.96367 0.94662 1.21052 0.98006 0.96586 0.98079 1.21435 0.98895 0.95127 0.98840 1.21457 0.99987 1.00911 0.92458 1.21373 0.97589 0.95153 1.00116 1.21174 1.00430 0.96619 0.97017 0.92743 0.96791 0.97816 0.75908 0.75738 0.90468 0.92059 0.76208 0.87650 0.89205 0.90438 0.87221 0.87516 0.90428 0.86017 0.83662 0.83245 0.84001 0.87067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.38 13.29 21.45 0.28 -53.10 16 2 C 0.01 0.68 5.46 84.66 0.46 1.15 16 3 Si 0.95 42.95 29.54 68.60 2.03 44.98 16 4 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 7 C -0.53 -28.17 8.84 25.60 0.23 -27.94 16 8 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 9 C 0.04 1.91 4.50 29.85 0.13 2.04 16 10 C 0.22 9.16 2.12 44.24 0.09 9.25 16 11 H 0.06 2.62 7.44 -2.38 -0.02 2.61 16 12 N -0.71 -24.91 4.02 -461.40 -1.86 -26.77 16 13 C 0.70 24.23 8.52 179.06 1.53 25.76 16 14 O -0.63 -27.30 16.01 -4.02 -0.06 -27.36 16 15 N -0.73 -17.40 5.18 -478.52 -2.48 -19.88 16 16 C 0.13 2.72 4.55 86.38 0.39 3.12 16 17 C 0.10 1.70 1.14 -9.78 -0.01 1.69 16 18 O -0.56 -10.92 13.00 -148.98 -1.94 -12.85 16 19 C -0.14 -2.12 6.54 31.61 0.21 -1.91 16 20 C 0.04 0.58 7.63 72.48 0.55 1.13 16 21 O -0.39 -7.74 11.65 -148.98 -1.74 -9.48 16 22 C 0.02 0.35 6.56 72.48 0.48 0.83 16 23 C -0.10 -3.62 4.91 -19.87 -0.10 -3.72 16 24 C -0.12 -3.84 9.33 22.27 0.21 -3.63 16 25 C -0.13 -3.33 10.05 22.27 0.22 -3.11 16 26 C -0.13 -3.28 10.05 22.27 0.22 -3.05 16 27 C -0.12 -3.54 10.05 22.27 0.22 -3.32 16 28 C -0.13 -4.74 9.67 22.27 0.22 -4.52 16 29 H 0.26 14.45 8.31 -92.70 -0.77 13.68 16 30 H 0.01 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 32 H 0.41 12.57 8.62 -92.71 -0.80 11.77 16 33 H 0.41 7.00 7.26 -92.71 -0.67 6.33 16 34 H 0.08 1.66 8.08 -2.39 -0.02 1.64 16 35 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.39 5.55 7.80 -74.06 -0.58 4.98 16 37 H 0.11 1.27 7.73 -2.38 -0.02 1.25 16 38 H 0.09 1.43 8.00 -2.39 -0.02 1.41 16 39 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.11 1.49 8.09 -2.39 -0.02 1.48 16 42 H 0.08 1.20 7.82 -2.39 -0.02 1.18 16 43 H 0.12 3.62 7.71 -2.91 -0.02 3.60 16 44 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 45 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 46 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 47 H 0.11 3.96 8.04 -2.91 -0.02 3.94 16 Total: -1.00 -73.47 391.42 -1.75 -75.22 By element: Atomic # 1 Polarization: 36.52 SS G_CDS: -1.05 Total: 35.48 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: 5.06 Total: -6.24 kcal Atomic # 7 Polarization: -95.69 SS G_CDS: -4.05 Total: -99.74 kcal Atomic # 8 Polarization: -45.96 SS G_CDS: -3.74 Total: -49.69 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -73.47 -1.75 -75.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179633717.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.329 kcal (2) G-P(sol) polarization free energy of solvation -73.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds