Wall clock time and date at job start Tue Mar 31 2020 23:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00053 * 2 1 4 4 H 1.48505 * 109.46944 * 270.00412 * 3 2 1 5 5 H 1.48494 * 109.47158 * 30.00324 * 3 2 1 6 6 H 1.48502 * 109.47037 * 150.00558 * 3 2 1 7 7 C 1.37874 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00135 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00241 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47147 * 179.97438 * 9 7 2 11 11 H 1.08995 * 109.46976 * 55.00325 * 10 9 7 12 12 N 1.46505 * 109.46971 * 295.00027 * 10 9 7 13 13 C 1.34781 * 119.99511 * 155.00113 * 12 10 9 14 14 O 1.21584 * 119.99970 * 359.97438 * 13 12 10 15 15 N 1.34771 * 119.99489 * 180.02562 * 13 12 10 16 16 C 1.46505 * 119.99622 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.47212 * 179.97438 * 16 15 13 18 18 O 1.42901 * 110.45621 * 302.60669 * 17 16 15 19 19 C 1.54505 * 110.51528 * 180.02562 * 17 16 15 20 20 C 1.54479 * 104.06367 * 241.35718 * 19 17 16 21 21 O 1.44426 * 104.80298 * 336.01878 * 20 19 17 22 22 C 1.44427 * 105.27604 * 40.50988 * 21 20 19 23 23 C 1.50696 * 109.46818 * 175.00589 * 10 9 7 24 24 C 1.38236 * 120.00651 * 79.72613 * 23 10 9 25 25 C 1.38236 * 120.00243 * 179.76504 * 24 23 10 26 26 C 1.38234 * 119.99847 * 0.50820 * 25 24 23 27 27 C 1.38231 * 120.00024 * 359.74304 * 26 25 24 28 28 C 1.38236 * 120.00337 * 0.02562 * 27 26 25 29 29 H 0.97008 * 119.99886 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.46494 * 60.00095 * 9 7 2 31 31 H 1.08993 * 109.47506 * 300.00179 * 9 7 2 32 32 H 0.97003 * 120.00113 * 335.00362 * 12 10 9 33 33 H 0.96996 * 120.00772 * 359.97438 * 15 13 12 34 34 H 1.09002 * 109.47068 * 299.99729 * 16 15 13 35 35 H 1.09001 * 109.47372 * 59.99816 * 16 15 13 36 36 H 0.96695 * 114.00693 * 59.29676 * 18 17 16 37 37 H 1.09000 * 110.51036 * 359.97438 * 19 17 16 38 38 H 1.08996 * 110.51306 * 122.70958 * 19 17 16 39 39 H 1.08997 * 110.37384 * 94.84586 * 20 19 17 40 40 H 1.09000 * 110.37270 * 217.07348 * 20 19 17 41 41 H 1.08994 * 110.37280 * 200.65510 * 22 21 20 42 42 H 1.09003 * 110.36754 * 78.32312 * 22 21 20 43 43 H 1.08001 * 119.99223 * 359.97438 * 24 23 10 44 44 H 1.08003 * 119.99684 * 180.23165 * 25 24 23 45 45 H 1.07995 * 119.99854 * 179.72576 * 26 25 24 46 46 H 1.08003 * 119.99940 * 179.97438 * 27 26 25 47 47 H 1.07992 * 120.00207 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 1 3.5866 -3.1758 -0.8425 12 7 3.6343 -3.2913 1.2512 13 6 3.5075 -4.6323 1.2992 14 8 3.7139 -5.2985 0.3033 15 7 3.1509 -5.2345 2.4509 16 6 3.0135 -6.6921 2.5033 17 6 2.6037 -7.1154 3.9153 18 8 3.5599 -6.6547 4.8721 19 6 2.4524 -8.6508 3.9979 20 6 0.9695 -8.8621 4.3756 21 8 0.5751 -7.6333 5.0239 22 6 1.1943 -6.5806 4.2530 23 6 5.5233 -2.6384 -0.1253 24 6 6.3091 -2.3914 0.9849 25 6 7.6868 -2.3979 0.8718 26 6 8.2786 -2.6410 -0.3536 27 6 7.4928 -2.8829 -1.4648 28 6 6.1151 -2.8812 -1.3508 29 1 -0.4850 0.8401 0.0004 30 1 3.8751 -0.6805 0.8889 31 1 3.8746 -0.6801 -0.8910 32 1 3.4693 -2.7597 2.0456 33 1 2.9858 -4.7030 3.2454 34 1 2.2513 -7.0111 1.7924 35 1 3.9660 -7.1563 2.2474 36 1 3.6734 -5.6945 4.8840 37 1 2.6692 -9.1084 3.0327 38 1 3.1050 -9.0579 4.7702 39 1 0.3700 -9.0283 3.4806 40 1 0.8687 -9.7039 5.0606 41 1 1.2663 -5.6686 4.8454 42 1 0.6291 -6.3969 3.3392 43 1 5.8466 -2.1967 1.9412 44 1 8.3008 -2.2086 1.7400 45 1 9.3549 -2.6417 -0.4428 46 1 7.9551 -3.0724 -2.4223 47 1 5.5012 -3.0697 -2.2190 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179633730.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:38 Heat of formation + Delta-G solvation = -99.071690 kcal Electronic energy + Delta-G solvation = -29129.605362 eV Core-core repulsion = 25084.281468 eV Total energy + Delta-G solvation = -4045.323894 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.51047 -39.67765 -38.63905 -36.72872 -35.40898 -34.07948 -32.70594 -31.90638 -31.03104 -30.55027 -29.41468 -29.01017 -26.04994 -24.76691 -23.22249 -22.34376 -21.78783 -20.85722 -20.79347 -19.88610 -18.43178 -17.39849 -17.14779 -16.65900 -16.40341 -16.11852 -15.62410 -15.53221 -15.12186 -14.75498 -14.68498 -14.36872 -13.92249 -13.81787 -13.48290 -13.34740 -13.15802 -13.05047 -12.85344 -12.65845 -12.56956 -12.40604 -11.91968 -11.80475 -11.75890 -11.37035 -11.13454 -11.09327 -10.75251 -10.66533 -10.52271 -10.19893 -9.89506 -9.86350 -9.80062 -9.36617 -9.07464 -8.66381 -8.62130 -8.44108 -8.30432 -6.14420 -4.14323 1.66704 1.70076 2.91677 3.23367 3.31800 3.33528 3.57822 3.60760 3.77096 4.08177 4.15387 4.34962 4.36908 4.50718 4.62025 4.81116 4.95045 5.16593 5.17529 5.19806 5.24196 5.26700 5.36612 5.41558 5.43732 5.44443 5.55619 5.64575 5.70971 5.80430 5.82508 5.99505 6.22045 6.29260 6.39241 6.41543 6.51800 6.71991 6.75380 6.78588 6.91148 6.99129 7.13294 7.26191 7.29783 7.39508 7.61859 8.36359 8.41662 8.91395 8.98223 9.46449 10.98271 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.008997 B = 0.003719 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3111.528398 B = 7527.165169 C = 9844.766248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.071 3.929 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.076 0.924 9 C -0.014 4.014 10 C 0.213 3.787 11 H 0.092 0.908 12 N -0.715 5.715 13 C 0.708 3.292 14 O -0.593 6.593 15 N -0.754 5.754 16 C 0.123 3.877 17 C 0.091 3.909 18 O -0.544 6.544 19 C -0.141 4.141 20 C 0.044 3.956 21 O -0.368 6.368 22 C 0.020 3.980 23 C -0.076 4.076 24 C -0.108 4.108 25 C -0.126 4.126 26 C -0.134 4.134 27 C -0.123 4.123 28 C -0.107 4.107 29 H 0.264 0.736 30 H 0.023 0.977 31 H 0.030 0.970 32 H 0.397 0.603 33 H 0.390 0.610 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.377 0.623 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.064 0.936 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.076 0.924 43 H 0.116 0.884 44 H 0.115 0.885 45 H 0.114 0.886 46 H 0.117 0.883 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.671 -12.162 7.671 17.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.131 4.131 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.558 4.558 8 H 0.094 0.906 9 C -0.052 4.052 10 C 0.108 3.892 11 H 0.110 0.890 12 N -0.367 5.367 13 C 0.408 3.592 14 O -0.471 6.471 15 N -0.412 5.412 16 C -0.002 4.002 17 C 0.050 3.950 18 O -0.350 6.350 19 C -0.179 4.179 20 C -0.033 4.033 21 O -0.287 6.287 22 C -0.057 4.057 23 C -0.078 4.078 24 C -0.126 4.126 25 C -0.144 4.144 26 C -0.152 4.152 27 C -0.141 4.141 28 C -0.126 4.126 29 H 0.074 0.926 30 H 0.041 0.959 31 H 0.048 0.952 32 H 0.231 0.769 33 H 0.223 0.777 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.225 0.775 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.083 0.917 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.094 0.906 43 H 0.134 0.866 44 H 0.133 0.867 45 H 0.132 0.868 46 H 0.135 0.865 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 9.596 -13.268 7.038 17.823 hybrid contribution 0.281 2.103 0.383 2.156 sum 9.876 -11.165 7.421 16.651 Atomic orbital electron populations 1.69905 1.06271 1.26965 1.50472 1.24983 0.94671 0.98968 0.94452 0.86864 0.80323 0.83874 0.78735 1.20189 1.21370 1.18976 1.21006 0.88658 0.94650 1.51491 0.90622 1.19881 0.97830 0.89833 0.97621 1.19825 0.87365 0.95929 0.86111 0.89022 1.45031 1.72897 1.04279 1.14477 1.15874 0.77803 0.82512 0.83015 1.90891 1.58045 1.64100 1.34082 1.44971 1.76764 1.07073 1.12343 1.21772 1.02740 0.80365 0.95317 1.22868 0.88916 0.95473 0.87792 1.86607 1.61611 1.27463 1.59348 1.22922 0.98196 0.92661 1.04097 1.23463 0.93113 0.88632 0.98061 1.89160 1.72587 1.15138 1.51787 1.24206 0.92089 0.92282 0.97137 1.20617 0.97076 0.96684 0.93407 1.20901 0.93312 0.99943 0.98450 1.21050 0.94851 1.01101 0.97371 1.21014 0.99242 1.01720 0.93212 1.21063 0.93854 1.00795 0.98361 1.21047 0.94636 0.99390 0.97483 0.92626 0.95874 0.95163 0.76931 0.77655 0.90481 0.90591 0.77496 0.88936 0.88856 0.91729 0.88625 0.88412 0.90568 0.86604 0.86725 0.86791 0.86518 0.86014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.38 13.96 55.43 0.77 -25.60 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.87 20.51 27.47 -169.99 -4.67 15.84 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.27 -5.92 6.54 56.52 0.37 -5.55 16 7 C -0.52 -13.62 9.39 -34.44 -0.32 -13.94 16 8 H 0.08 2.19 7.99 -52.49 -0.42 1.77 16 9 C -0.01 -0.30 3.56 -27.88 -0.10 -0.40 16 10 C 0.21 4.09 2.11 -69.08 -0.15 3.95 16 11 H 0.09 1.99 7.44 -51.93 -0.39 1.60 16 12 N -0.71 -12.13 4.05 -59.81 -0.24 -12.37 16 13 C 0.71 12.11 8.52 -86.92 -0.74 11.37 16 14 O -0.59 -12.45 16.01 5.29 0.08 -12.36 16 15 N -0.75 -9.33 5.18 -65.22 -0.34 -9.66 16 16 C 0.12 1.39 4.55 -4.04 -0.02 1.38 16 17 C 0.09 0.88 1.14 -89.05 -0.10 0.77 16 18 O -0.54 -5.42 13.00 -35.23 -0.46 -5.88 16 19 C -0.14 -1.18 6.54 -25.17 -0.16 -1.35 16 20 C 0.04 0.38 7.63 37.93 0.29 0.67 16 21 O -0.37 -4.29 11.65 -35.23 -0.41 -4.70 16 22 C 0.02 0.20 6.56 37.93 0.25 0.45 16 23 C -0.08 -1.33 4.91 -104.62 -0.51 -1.84 16 24 C -0.11 -1.67 9.32 -39.58 -0.37 -2.04 16 25 C -0.13 -1.73 10.05 -39.58 -0.40 -2.13 16 26 C -0.13 -1.78 10.05 -39.59 -0.40 -2.18 16 27 C -0.12 -1.74 10.05 -39.58 -0.40 -2.13 16 28 C -0.11 -1.76 9.67 -39.58 -0.38 -2.14 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 31 H 0.03 0.67 7.57 -51.93 -0.39 0.28 16 32 H 0.40 5.98 8.62 -40.82 -0.35 5.63 16 33 H 0.39 3.70 7.26 -40.82 -0.30 3.41 16 34 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.38 2.68 7.80 45.56 0.36 3.03 16 37 H 0.09 0.65 7.73 -51.93 -0.40 0.25 16 38 H 0.09 0.80 8.00 -51.93 -0.42 0.38 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.10 0.90 8.09 -51.93 -0.42 0.48 16 42 H 0.08 0.80 7.83 -51.93 -0.41 0.39 16 43 H 0.12 1.64 7.73 -52.49 -0.41 1.24 16 44 H 0.11 1.29 8.06 -52.48 -0.42 0.87 16 45 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 46 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 47 H 0.12 1.91 8.04 -52.49 -0.42 1.49 16 LS Contribution 387.85 15.07 5.84 5.84 Total: -1.00 -34.17 387.85 -9.49 -43.66 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -6.46 Total: 12.97 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -3.61 Total: -7.73 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: 0.19 Total: -47.64 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.78 Total: -22.95 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.67 Total: 15.84 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.17 -9.49 -43.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179633730.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.412 kcal (2) G-P(sol) polarization free energy of solvation -34.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds