Wall clock time and date at job start Tue Mar 31 2020 23:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00053 * 2 1 4 4 H 1.48505 * 109.46944 * 270.00412 * 3 2 1 5 5 H 1.48494 * 109.47158 * 30.00324 * 3 2 1 6 6 H 1.48502 * 109.47037 * 150.00558 * 3 2 1 7 7 C 1.37874 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00135 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00241 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47147 * 179.97438 * 9 7 2 11 11 H 1.08995 * 109.46976 * 55.00325 * 10 9 7 12 12 N 1.46505 * 109.46971 * 295.00027 * 10 9 7 13 13 C 1.34781 * 119.99511 * 155.00113 * 12 10 9 14 14 O 1.21584 * 119.99970 * 359.97438 * 13 12 10 15 15 N 1.34771 * 119.99489 * 180.02562 * 13 12 10 16 16 C 1.46505 * 119.99622 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.47212 * 179.97438 * 16 15 13 18 18 O 1.42901 * 110.45621 * 302.60669 * 17 16 15 19 19 C 1.54505 * 110.51528 * 180.02562 * 17 16 15 20 20 C 1.54479 * 104.06367 * 241.35718 * 19 17 16 21 21 O 1.44426 * 104.80298 * 336.01878 * 20 19 17 22 22 C 1.44427 * 105.27604 * 40.50988 * 21 20 19 23 23 C 1.50696 * 109.46818 * 175.00589 * 10 9 7 24 24 C 1.38236 * 120.00651 * 79.72613 * 23 10 9 25 25 C 1.38236 * 120.00243 * 179.76504 * 24 23 10 26 26 C 1.38234 * 119.99847 * 0.50820 * 25 24 23 27 27 C 1.38231 * 120.00024 * 359.74304 * 26 25 24 28 28 C 1.38236 * 120.00337 * 0.02562 * 27 26 25 29 29 H 0.97008 * 119.99886 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.46494 * 60.00095 * 9 7 2 31 31 H 1.08993 * 109.47506 * 300.00179 * 9 7 2 32 32 H 0.97003 * 120.00113 * 335.00362 * 12 10 9 33 33 H 0.96996 * 120.00772 * 359.97438 * 15 13 12 34 34 H 1.09002 * 109.47068 * 299.99729 * 16 15 13 35 35 H 1.09001 * 109.47372 * 59.99816 * 16 15 13 36 36 H 0.96695 * 114.00693 * 59.29676 * 18 17 16 37 37 H 1.09000 * 110.51036 * 359.97438 * 19 17 16 38 38 H 1.08996 * 110.51306 * 122.70958 * 19 17 16 39 39 H 1.08997 * 110.37384 * 94.84586 * 20 19 17 40 40 H 1.09000 * 110.37270 * 217.07348 * 20 19 17 41 41 H 1.08994 * 110.37280 * 200.65510 * 22 21 20 42 42 H 1.09003 * 110.36754 * 78.32312 * 22 21 20 43 43 H 1.08001 * 119.99223 * 359.97438 * 24 23 10 44 44 H 1.08003 * 119.99684 * 180.23165 * 25 24 23 45 45 H 1.07995 * 119.99854 * 179.72576 * 26 25 24 46 46 H 1.08003 * 119.99940 * 179.97438 * 27 26 25 47 47 H 1.07992 * 120.00207 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 1 3.5866 -3.1758 -0.8425 12 7 3.6343 -3.2913 1.2512 13 6 3.5075 -4.6323 1.2992 14 8 3.7139 -5.2985 0.3033 15 7 3.1509 -5.2345 2.4509 16 6 3.0135 -6.6921 2.5033 17 6 2.6037 -7.1154 3.9153 18 8 3.5599 -6.6547 4.8721 19 6 2.4524 -8.6508 3.9979 20 6 0.9695 -8.8621 4.3756 21 8 0.5751 -7.6333 5.0239 22 6 1.1943 -6.5806 4.2530 23 6 5.5233 -2.6384 -0.1253 24 6 6.3091 -2.3914 0.9849 25 6 7.6868 -2.3979 0.8718 26 6 8.2786 -2.6410 -0.3536 27 6 7.4928 -2.8829 -1.4648 28 6 6.1151 -2.8812 -1.3508 29 1 -0.4850 0.8401 0.0004 30 1 3.8751 -0.6805 0.8889 31 1 3.8746 -0.6801 -0.8910 32 1 3.4693 -2.7597 2.0456 33 1 2.9858 -4.7030 3.2454 34 1 2.2513 -7.0111 1.7924 35 1 3.9660 -7.1563 2.2474 36 1 3.6734 -5.6945 4.8840 37 1 2.6692 -9.1084 3.0327 38 1 3.1050 -9.0579 4.7702 39 1 0.3700 -9.0283 3.4806 40 1 0.8687 -9.7039 5.0606 41 1 1.2663 -5.6686 4.8454 42 1 0.6291 -6.3969 3.3392 43 1 5.8466 -2.1967 1.9412 44 1 8.3008 -2.2086 1.7400 45 1 9.3549 -2.6417 -0.4428 46 1 7.9551 -3.0724 -2.4223 47 1 5.5012 -3.0697 -2.2190 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179633730.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:37 Heat of formation + Delta-G solvation = -125.167449 kcal Electronic energy + Delta-G solvation = -29130.736959 eV Core-core repulsion = 25084.281468 eV Total energy + Delta-G solvation = -4046.455491 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.55044 -40.80720 -39.81719 -37.62811 -36.83589 -35.27282 -34.67184 -32.95911 -32.14920 -31.67065 -30.95696 -29.94782 -27.24248 -26.18862 -24.01218 -23.58087 -23.24995 -22.16220 -21.65615 -21.26345 -19.65576 -19.03823 -18.30131 -17.80348 -17.42032 -17.07700 -16.82377 -16.56980 -16.30457 -16.15584 -15.86517 -15.79247 -15.09586 -15.06290 -14.73708 -14.59362 -14.27707 -14.16595 -14.14174 -13.79233 -13.77352 -13.52587 -13.41591 -13.02537 -12.71053 -12.53563 -12.47044 -12.40209 -11.92729 -11.88010 -11.72597 -11.71967 -11.40424 -11.35238 -11.27470 -10.76527 -10.66762 -10.36961 -9.79848 -9.72750 -9.51885 -8.26653 -6.31156 0.50950 0.57435 1.38367 1.40192 1.50402 1.70975 2.21574 2.36836 2.84423 2.94598 3.04244 3.08249 3.26184 3.41052 3.64591 3.71886 3.95362 4.04989 4.11332 4.22029 4.23643 4.33810 4.37846 4.43292 4.58392 4.60763 4.61478 4.66954 4.74790 4.77629 4.77854 4.89552 4.99642 5.04084 5.16423 5.20038 5.28025 5.38474 5.56328 5.59868 5.66047 5.67086 5.68467 5.83240 6.03469 6.19409 6.28168 6.59675 6.75946 7.11537 7.33163 7.62923 8.89495 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.008997 B = 0.003719 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3111.528398 B = 7527.165169 C = 9844.766248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.013 3.987 3 Si 0.943 3.057 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.240 1.240 7 C -0.517 4.517 8 H 0.032 0.968 9 C -0.005 4.005 10 C 0.224 3.776 11 H 0.054 0.946 12 N -0.711 5.711 13 C 0.704 3.296 14 O -0.635 6.635 15 N -0.735 5.735 16 C 0.127 3.873 17 C 0.103 3.897 18 O -0.552 6.552 19 C -0.140 4.140 20 C 0.039 3.961 21 O -0.392 6.392 22 C 0.018 3.982 23 C -0.099 4.099 24 C -0.117 4.117 25 C -0.125 4.125 26 C -0.129 4.129 27 C -0.125 4.125 28 C -0.132 4.132 29 H 0.265 0.735 30 H 0.039 0.961 31 H 0.029 0.971 32 H 0.406 0.594 33 H 0.406 0.594 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.388 0.612 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.113 0.887 41 H 0.106 0.894 42 H 0.068 0.932 43 H 0.126 0.874 44 H 0.146 0.854 45 H 0.149 0.851 46 H 0.141 0.859 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.708 -11.687 9.063 19.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.184 4.184 3 Si 0.767 3.233 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.164 1.164 7 C -0.555 4.555 8 H 0.050 0.950 9 C -0.042 4.042 10 C 0.118 3.882 11 H 0.072 0.928 12 N -0.364 5.364 13 C 0.404 3.596 14 O -0.517 6.517 15 N -0.393 5.393 16 C 0.002 3.998 17 C 0.061 3.939 18 O -0.360 6.360 19 C -0.178 4.178 20 C -0.037 4.037 21 O -0.311 6.311 22 C -0.059 4.059 23 C -0.100 4.100 24 C -0.136 4.136 25 C -0.142 4.142 26 C -0.147 4.147 27 C -0.142 4.142 28 C -0.150 4.150 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.047 0.953 32 H 0.242 0.758 33 H 0.242 0.758 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.238 0.762 37 H 0.124 0.876 38 H 0.113 0.887 39 H 0.091 0.909 40 H 0.131 0.869 41 H 0.124 0.876 42 H 0.086 0.914 43 H 0.144 0.856 44 H 0.164 0.836 45 H 0.166 0.834 46 H 0.159 0.841 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 12.642 -12.796 8.482 19.887 hybrid contribution -0.672 1.845 -0.068 1.964 sum 11.970 -10.951 8.415 18.276 Atomic orbital electron populations 1.70064 1.08285 1.27999 1.52498 1.25865 0.95390 1.02993 0.94196 0.85775 0.79802 0.78796 0.78951 1.19992 1.21254 1.16364 1.21185 0.91011 0.92919 1.50354 0.94956 1.19739 0.94591 0.91898 0.98000 1.19390 0.89184 0.93824 0.85794 0.92805 1.44875 1.72913 1.04480 1.14127 1.16038 0.77677 0.82310 0.83574 1.90857 1.59934 1.64909 1.35977 1.44780 1.75226 1.07771 1.11528 1.21820 1.02159 0.79270 0.96533 1.22738 0.88481 0.96330 0.86361 1.86598 1.61533 1.28711 1.59165 1.22970 0.98198 0.91640 1.04947 1.23670 0.93165 0.88106 0.98782 1.89132 1.73068 1.16345 1.52544 1.24236 0.92169 0.92590 0.96927 1.20427 0.95519 0.99309 0.94780 1.21082 0.94313 1.00050 0.98107 1.21440 0.94251 0.99765 0.98789 1.21468 1.00982 0.99724 0.92503 1.21374 0.92816 0.99942 1.00114 1.21186 0.96074 1.00675 0.97087 0.92607 0.94308 0.95295 0.75810 0.75752 0.91311 0.91236 0.76175 0.87612 0.88653 0.90920 0.86932 0.87585 0.91354 0.85613 0.83628 0.83362 0.84080 0.86952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.40 13.96 21.45 0.30 -57.10 16 2 C 0.01 0.71 5.47 84.65 0.46 1.18 16 3 Si 0.94 42.03 27.47 68.60 1.88 43.92 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 5 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.24 -9.69 6.54 99.48 0.65 -9.04 16 7 C -0.52 -27.92 9.39 25.60 0.24 -27.68 16 8 H 0.03 1.98 7.99 -2.91 -0.02 1.96 16 9 C 0.00 -0.20 3.56 29.85 0.11 -0.09 16 10 C 0.22 8.88 2.11 44.24 0.09 8.98 16 11 H 0.05 2.51 7.44 -2.39 -0.02 2.49 16 12 N -0.71 -24.62 4.05 -461.41 -1.87 -26.49 16 13 C 0.70 24.69 8.52 179.05 1.53 26.22 16 14 O -0.64 -27.78 16.01 -3.98 -0.06 -27.84 16 15 N -0.74 -18.13 5.18 -478.53 -2.48 -20.61 16 16 C 0.13 2.85 4.55 86.38 0.39 3.24 16 17 C 0.10 1.88 1.14 -9.78 -0.01 1.87 16 18 O -0.55 -10.12 13.00 -148.98 -1.94 -12.06 16 19 C -0.14 -2.17 6.54 31.61 0.21 -1.96 16 20 C 0.04 0.62 7.63 72.48 0.55 1.17 16 21 O -0.39 -8.84 11.65 -148.98 -1.74 -10.57 16 22 C 0.02 0.36 6.56 72.48 0.48 0.83 16 23 C -0.10 -3.41 4.91 -19.86 -0.10 -3.51 16 24 C -0.12 -3.41 9.32 22.27 0.21 -3.20 16 25 C -0.12 -2.99 10.05 22.27 0.22 -2.76 16 26 C -0.13 -2.95 10.05 22.27 0.22 -2.72 16 27 C -0.12 -3.25 10.05 22.27 0.22 -3.03 16 28 C -0.13 -4.30 9.67 22.27 0.22 -4.09 16 29 H 0.26 15.07 8.31 -92.70 -0.77 14.30 16 30 H 0.04 1.58 7.20 -2.39 -0.02 1.57 16 31 H 0.03 1.28 7.57 -2.39 -0.02 1.26 16 32 H 0.41 12.20 8.62 -92.71 -0.80 11.40 16 33 H 0.41 7.39 7.26 -92.71 -0.67 6.72 16 34 H 0.07 1.69 8.08 -2.39 -0.02 1.67 16 35 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.39 4.83 7.80 -74.06 -0.58 4.25 16 37 H 0.11 1.34 7.73 -2.39 -0.02 1.33 16 38 H 0.09 1.47 8.00 -2.39 -0.02 1.45 16 39 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.11 1.86 8.09 -2.39 -0.02 1.84 16 42 H 0.07 1.45 7.83 -2.39 -0.02 1.43 16 43 H 0.13 3.28 7.73 -2.91 -0.02 3.26 16 44 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 45 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 46 H 0.14 2.89 8.06 -2.91 -0.02 2.86 16 47 H 0.11 3.72 8.04 -2.91 -0.02 3.69 16 Total: -1.00 -76.37 387.85 -1.96 -78.33 By element: Atomic # 1 Polarization: 39.08 SS G_CDS: -1.10 Total: 37.98 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: 5.04 Total: -5.55 kcal Atomic # 7 Polarization: -100.16 SS G_CDS: -4.05 Total: -104.20 kcal Atomic # 8 Polarization: -46.74 SS G_CDS: -3.74 Total: -50.47 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 1.88 Total: 43.92 kcal Total: -76.37 -1.96 -78.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179633730.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.837 kcal (2) G-P(sol) polarization free energy of solvation -76.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds