Wall clock time and date at job start Tue Mar 31 2020 23:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99724 * 2 1 4 4 H 1.48504 * 109.47045 * 239.99829 * 3 2 1 5 5 H 1.48503 * 109.47476 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47106 * 119.99780 * 3 2 1 7 7 C 1.37870 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00018 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00164 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46970 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47070 * 55.00272 * 10 9 7 12 12 N 1.46505 * 109.47411 * 295.00193 * 10 9 7 13 13 C 1.34769 * 119.99798 * 155.00053 * 12 10 9 14 14 O 1.21580 * 120.00601 * 0.02562 * 13 12 10 15 15 N 1.34781 * 119.99697 * 179.97438 * 13 12 10 16 16 C 1.46503 * 119.99998 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.47116 * 180.02562 * 16 15 13 18 18 O 1.42906 * 110.45556 * 64.30001 * 17 16 15 19 19 C 1.54507 * 110.51211 * 186.90782 * 17 16 15 20 20 C 1.54472 * 104.06314 * 118.64723 * 19 17 16 21 21 O 1.44423 * 104.80524 * 23.97880 * 20 19 17 22 22 C 1.44646 * 105.36723 * 319.56301 * 21 20 19 23 23 C 1.50703 * 109.46966 * 175.00182 * 10 9 7 24 24 C 1.38237 * 119.99761 * 79.72442 * 23 10 9 25 25 C 1.38238 * 119.99525 * 179.74404 * 24 23 10 26 26 C 1.38230 * 120.00041 * 0.55401 * 25 24 23 27 27 C 1.38235 * 119.99965 * 359.70341 * 26 25 24 28 28 C 1.38228 * 120.00398 * 0.02562 * 27 26 25 29 29 H 0.97001 * 120.00168 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46983 * 60.00221 * 9 7 2 31 31 H 1.08996 * 109.47393 * 299.99979 * 9 7 2 32 32 H 0.97005 * 119.99239 * 335.00029 * 12 10 9 33 33 H 0.96998 * 120.00231 * 0.02562 * 15 13 12 34 34 H 1.08999 * 109.47056 * 300.00054 * 16 15 13 35 35 H 1.09001 * 109.46660 * 60.00398 * 16 15 13 36 36 H 0.96696 * 114.00021 * 300.69812 * 18 17 16 37 37 H 1.09006 * 110.50698 * 237.29245 * 19 17 16 38 38 H 1.09000 * 110.51096 * 359.97438 * 19 17 16 39 39 H 1.09005 * 110.37121 * 142.81005 * 20 19 17 40 40 H 1.09006 * 110.36984 * 265.14331 * 20 19 17 41 41 H 1.08996 * 110.33987 * 281.59575 * 22 21 20 42 42 H 1.08992 * 110.50444 * 159.18615 * 22 21 20 43 43 H 1.07999 * 120.00184 * 0.02562 * 24 23 10 44 44 H 1.07997 * 119.99738 * 180.27897 * 25 24 23 45 45 H 1.08000 * 120.00022 * 179.72170 * 26 25 24 46 46 H 1.08003 * 119.99510 * 180.02562 * 27 26 25 47 47 H 1.07997 * 120.00201 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 1 2.9301 -3.5547 0.8427 12 7 3.0055 -3.6544 -1.2509 13 6 4.2301 -4.2150 -1.2993 14 8 4.7039 -4.7275 -0.3038 15 7 4.9292 -4.2084 -2.4516 16 6 6.2606 -4.8173 -2.5041 17 6 6.8314 -4.6745 -3.9164 18 8 7.0299 -3.2963 -4.2379 19 6 8.1573 -5.4571 -4.0462 20 6 7.8675 -6.5076 -5.1410 21 8 6.7862 -5.9449 -5.9155 22 6 5.8955 -5.3417 -4.9485 23 6 1.4961 -4.9636 0.1264 24 6 0.8888 -5.5208 -0.9834 25 6 0.2060 -6.7174 -0.8699 26 6 0.1208 -7.3509 0.3558 27 6 0.7236 -6.7910 1.4666 28 6 1.4111 -5.5973 1.3520 29 1 -0.4850 0.8400 -0.0004 30 1 0.6241 -2.5575 -0.8880 31 1 0.6247 -2.5563 0.8919 32 1 2.6272 -3.2458 -2.0453 33 1 4.5511 -3.7999 -3.2460 34 1 6.9181 -4.3151 -1.7944 35 1 6.1873 -5.8739 -2.2466 36 1 6.2236 -2.7638 -4.2011 37 1 8.9637 -4.7931 -4.3579 38 1 8.4064 -5.9454 -3.1041 39 1 8.7469 -6.6548 -5.7680 40 1 7.5601 -7.4510 -4.6896 41 1 5.2843 -6.1057 -4.4683 42 1 5.2631 -4.5937 -5.4266 43 1 0.9517 -5.0236 -1.9401 44 1 -0.2646 -7.1550 -1.7378 45 1 -0.4164 -8.2835 0.4454 46 1 0.6573 -7.2862 2.4241 47 1 1.8817 -5.1597 2.2200 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179633753.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:31 Heat of formation + Delta-G solvation = -103.588461 kcal Electronic energy + Delta-G solvation = -29130.007445 eV Core-core repulsion = 25084.487689 eV Total energy + Delta-G solvation = -4045.519756 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 6.46 seconds Orbital eigenvalues (eV) -40.52540 -39.62869 -38.57092 -36.70912 -35.32032 -34.11115 -32.76613 -31.88409 -30.94578 -30.45591 -29.23667 -28.66350 -26.02307 -24.73157 -23.26664 -22.30209 -21.96192 -20.87621 -20.79564 -19.83965 -18.37780 -17.41295 -16.92507 -16.58352 -16.19950 -16.12889 -15.66914 -15.48810 -15.13019 -14.69652 -14.62525 -14.57204 -13.91027 -13.81684 -13.47843 -13.36686 -13.05403 -12.96681 -12.79382 -12.56827 -12.48946 -12.11779 -11.94278 -11.80448 -11.56426 -11.17562 -11.14753 -10.92802 -10.73902 -10.64874 -10.54712 -10.47346 -9.91962 -9.80288 -9.78174 -9.33143 -9.07725 -8.54726 -8.47709 -8.36635 -8.18758 -6.11065 -4.14686 1.77336 1.80020 2.93963 3.26794 3.32465 3.35306 3.53549 3.59740 3.76524 4.10466 4.20120 4.32378 4.37802 4.47418 4.66117 4.75987 4.89932 5.15611 5.25526 5.25862 5.26787 5.28175 5.35616 5.36788 5.38836 5.53223 5.56170 5.61926 5.69989 5.90233 5.93699 6.12988 6.33649 6.34871 6.41423 6.49550 6.58432 6.83842 6.85060 6.91379 7.05679 7.19742 7.28834 7.40252 7.48535 7.64208 7.85657 8.23525 8.41281 8.91136 9.00191 9.50480 10.99369 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.007994 B = 0.003933 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3501.738499 B = 7117.179791 C = 9797.463476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.024 3.976 10 C 0.202 3.798 11 H 0.086 0.914 12 N -0.714 5.714 13 C 0.705 3.295 14 O -0.594 6.594 15 N -0.756 5.756 16 C 0.123 3.877 17 C 0.091 3.909 18 O -0.545 6.545 19 C -0.141 4.141 20 C 0.045 3.955 21 O -0.369 6.369 22 C 0.020 3.980 23 C -0.071 4.071 24 C -0.107 4.107 25 C -0.126 4.126 26 C -0.135 4.135 27 C -0.123 4.123 28 C -0.108 4.108 29 H 0.262 0.738 30 H 0.024 0.976 31 H 0.035 0.965 32 H 0.397 0.603 33 H 0.390 0.610 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.380 0.620 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.097 0.903 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.113 0.887 46 H 0.116 0.884 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.871 -13.547 -8.276 18.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.076 0.924 9 C -0.013 4.013 10 C 0.097 3.903 11 H 0.104 0.896 12 N -0.367 5.367 13 C 0.405 3.595 14 O -0.472 6.472 15 N -0.414 5.414 16 C -0.003 4.003 17 C 0.050 3.950 18 O -0.351 6.351 19 C -0.179 4.179 20 C -0.032 4.032 21 O -0.288 6.288 22 C -0.057 4.057 23 C -0.072 4.072 24 C -0.125 4.125 25 C -0.144 4.144 26 C -0.154 4.154 27 C -0.141 4.141 28 C -0.126 4.126 29 H 0.072 0.928 30 H 0.042 0.958 31 H 0.053 0.947 32 H 0.230 0.770 33 H 0.224 0.776 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.228 0.772 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.116 0.884 43 H 0.133 0.867 44 H 0.132 0.868 45 H 0.131 0.869 46 H 0.134 0.866 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 9.734 -14.091 -7.628 18.748 hybrid contribution -0.580 1.567 -0.398 1.718 sum 9.154 -12.524 -8.026 17.466 Atomic orbital electron populations 1.69947 1.06015 1.26937 1.50191 1.24981 0.94787 0.99201 0.95127 0.86654 0.79540 0.83075 0.78698 1.20305 1.21320 1.20219 1.21093 0.93045 0.90369 1.51363 0.92438 1.19393 0.93192 0.90151 0.98579 1.20133 0.92940 0.91722 0.85484 0.89550 1.45136 1.16053 1.60754 1.14706 1.15937 0.81188 0.79376 0.82983 1.90887 1.70590 1.51622 1.34138 1.45033 1.18828 1.65211 1.12305 1.21780 0.83480 0.99330 0.95672 1.22849 0.95800 0.83535 0.92862 1.86606 1.37930 1.18532 1.92023 1.22922 0.96752 0.97563 1.00679 1.23463 0.91039 0.95703 0.92976 1.89184 1.35357 1.74599 1.29626 1.24220 0.93129 0.97891 0.90444 1.20594 0.96660 0.96657 0.93303 1.20883 0.97617 0.95540 0.98482 1.21034 1.00015 0.96016 0.97330 1.20988 1.01077 1.00054 0.93236 1.21040 0.98569 0.96213 0.98280 1.21021 0.99071 0.95071 0.97463 0.92796 0.95766 0.94675 0.76950 0.77632 0.90415 0.90658 0.77164 0.88789 0.88927 0.88589 0.91811 0.90814 0.88445 0.86685 0.86820 0.86887 0.86634 0.86181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.25 13.29 55.43 0.74 -24.51 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -13.51 8.84 -34.44 -0.30 -13.82 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.57 4.49 -27.88 -0.13 0.44 16 10 C 0.20 4.02 2.11 -69.08 -0.15 3.88 16 11 H 0.09 1.91 7.44 -51.93 -0.39 1.53 16 12 N -0.71 -12.28 4.05 -59.81 -0.24 -12.52 16 13 C 0.71 12.01 8.52 -86.92 -0.74 11.27 16 14 O -0.59 -12.45 16.01 5.30 0.08 -12.36 16 15 N -0.76 -9.20 5.13 -65.23 -0.33 -9.53 16 16 C 0.12 1.36 4.56 -4.04 -0.02 1.34 16 17 C 0.09 0.85 1.14 -89.05 -0.10 0.75 16 18 O -0.54 -5.68 13.00 -35.23 -0.46 -6.14 16 19 C -0.14 -1.15 6.54 -25.17 -0.16 -1.32 16 20 C 0.05 0.36 7.63 37.93 0.29 0.65 16 21 O -0.37 -3.98 11.65 -35.23 -0.41 -4.39 16 22 C 0.02 0.19 6.20 37.93 0.24 0.42 16 23 C -0.07 -1.29 4.91 -104.62 -0.51 -1.81 16 24 C -0.11 -1.76 9.32 -39.58 -0.37 -2.13 16 25 C -0.13 -1.84 10.05 -39.58 -0.40 -2.24 16 26 C -0.14 -1.91 10.05 -39.59 -0.40 -2.31 16 27 C -0.12 -1.84 10.05 -39.59 -0.40 -2.24 16 28 C -0.11 -1.86 9.67 -39.59 -0.38 -2.24 16 29 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.40 6.12 8.62 -40.82 -0.35 5.77 16 33 H 0.39 3.64 7.40 -40.82 -0.30 3.34 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.38 3.01 8.25 45.56 0.38 3.39 16 37 H 0.09 0.81 8.00 -51.93 -0.42 0.39 16 38 H 0.09 0.63 7.73 -51.93 -0.40 0.23 16 39 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.65 7.87 -51.93 -0.41 0.24 16 42 H 0.10 0.77 8.09 -51.93 -0.42 0.35 16 43 H 0.12 1.75 7.73 -52.49 -0.41 1.35 16 44 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 45 H 0.11 1.28 8.06 -52.49 -0.42 0.85 16 46 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 47 H 0.12 2.00 8.04 -52.49 -0.42 1.57 16 LS Contribution 391.75 15.07 5.90 5.90 Total: -1.00 -33.35 391.75 -9.86 -43.21 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -6.48 Total: 12.36 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -3.63 Total: -7.80 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: 0.16 Total: -46.56 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -0.78 Total: -22.90 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.35 -9.86 -43.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179633753.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.381 kcal (2) G-P(sol) polarization free energy of solvation -33.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.46 seconds