Wall clock time and date at job start Tue Mar 31 2020 23:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99724 * 2 1 4 4 H 1.48504 * 109.47045 * 239.99829 * 3 2 1 5 5 H 1.48503 * 109.47476 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47106 * 119.99780 * 3 2 1 7 7 C 1.37870 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00018 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00164 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46970 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47070 * 55.00272 * 10 9 7 12 12 N 1.46505 * 109.47411 * 295.00193 * 10 9 7 13 13 C 1.34769 * 119.99798 * 155.00053 * 12 10 9 14 14 O 1.21580 * 120.00601 * 0.02562 * 13 12 10 15 15 N 1.34781 * 119.99697 * 179.97438 * 13 12 10 16 16 C 1.46503 * 119.99998 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.47116 * 180.02562 * 16 15 13 18 18 O 1.42906 * 110.45556 * 64.30001 * 17 16 15 19 19 C 1.54507 * 110.51211 * 186.90782 * 17 16 15 20 20 C 1.54472 * 104.06314 * 118.64723 * 19 17 16 21 21 O 1.44423 * 104.80524 * 23.97880 * 20 19 17 22 22 C 1.44646 * 105.36723 * 319.56301 * 21 20 19 23 23 C 1.50703 * 109.46966 * 175.00182 * 10 9 7 24 24 C 1.38237 * 119.99761 * 79.72442 * 23 10 9 25 25 C 1.38238 * 119.99525 * 179.74404 * 24 23 10 26 26 C 1.38230 * 120.00041 * 0.55401 * 25 24 23 27 27 C 1.38235 * 119.99965 * 359.70341 * 26 25 24 28 28 C 1.38228 * 120.00398 * 0.02562 * 27 26 25 29 29 H 0.97001 * 120.00168 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46983 * 60.00221 * 9 7 2 31 31 H 1.08996 * 109.47393 * 299.99979 * 9 7 2 32 32 H 0.97005 * 119.99239 * 335.00029 * 12 10 9 33 33 H 0.96998 * 120.00231 * 0.02562 * 15 13 12 34 34 H 1.08999 * 109.47056 * 300.00054 * 16 15 13 35 35 H 1.09001 * 109.46660 * 60.00398 * 16 15 13 36 36 H 0.96696 * 114.00021 * 300.69812 * 18 17 16 37 37 H 1.09006 * 110.50698 * 237.29245 * 19 17 16 38 38 H 1.09000 * 110.51096 * 359.97438 * 19 17 16 39 39 H 1.09005 * 110.37121 * 142.81005 * 20 19 17 40 40 H 1.09006 * 110.36984 * 265.14331 * 20 19 17 41 41 H 1.08996 * 110.33987 * 281.59575 * 22 21 20 42 42 H 1.08992 * 110.50444 * 159.18615 * 22 21 20 43 43 H 1.07999 * 120.00184 * 0.02562 * 24 23 10 44 44 H 1.07997 * 119.99738 * 180.27897 * 25 24 23 45 45 H 1.08000 * 120.00022 * 179.72170 * 26 25 24 46 46 H 1.08003 * 119.99510 * 180.02562 * 27 26 25 47 47 H 1.07997 * 120.00201 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 1 2.9301 -3.5547 0.8427 12 7 3.0055 -3.6544 -1.2509 13 6 4.2301 -4.2150 -1.2993 14 8 4.7039 -4.7275 -0.3038 15 7 4.9292 -4.2084 -2.4516 16 6 6.2606 -4.8173 -2.5041 17 6 6.8314 -4.6745 -3.9164 18 8 7.0299 -3.2963 -4.2379 19 6 8.1573 -5.4571 -4.0462 20 6 7.8675 -6.5076 -5.1410 21 8 6.7862 -5.9449 -5.9155 22 6 5.8955 -5.3417 -4.9485 23 6 1.4961 -4.9636 0.1264 24 6 0.8888 -5.5208 -0.9834 25 6 0.2060 -6.7174 -0.8699 26 6 0.1208 -7.3509 0.3558 27 6 0.7236 -6.7910 1.4666 28 6 1.4111 -5.5973 1.3520 29 1 -0.4850 0.8400 -0.0004 30 1 0.6241 -2.5575 -0.8880 31 1 0.6247 -2.5563 0.8919 32 1 2.6272 -3.2458 -2.0453 33 1 4.5511 -3.7999 -3.2460 34 1 6.9181 -4.3151 -1.7944 35 1 6.1873 -5.8739 -2.2466 36 1 6.2236 -2.7638 -4.2011 37 1 8.9637 -4.7931 -4.3579 38 1 8.4064 -5.9454 -3.1041 39 1 8.7469 -6.6548 -5.7680 40 1 7.5601 -7.4510 -4.6896 41 1 5.2843 -6.1057 -4.4683 42 1 5.2631 -4.5937 -5.4266 43 1 0.9517 -5.0236 -1.9401 44 1 -0.2646 -7.1550 -1.7378 45 1 -0.4164 -8.2835 0.4454 46 1 0.6573 -7.2862 2.4241 47 1 1.8817 -5.1597 2.2200 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179633753.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:04 Heat of formation + Delta-G solvation = -128.137799 kcal Electronic energy + Delta-G solvation = -29131.071984 eV Core-core repulsion = 25084.487689 eV Total energy + Delta-G solvation = -4046.584295 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 29.27 seconds Orbital eigenvalues (eV) -41.52802 -40.77287 -39.79458 -37.57594 -36.79829 -35.29886 -34.70615 -32.87856 -32.08640 -31.65766 -30.54969 -29.84729 -27.17419 -26.25796 -24.02502 -23.76762 -23.33727 -22.13455 -21.63756 -21.24284 -19.60705 -18.67556 -18.18959 -17.74062 -17.44582 -17.08255 -16.77383 -16.54137 -16.48568 -16.16757 -15.83302 -15.78273 -15.08005 -14.91718 -14.81333 -14.43531 -14.16984 -14.15140 -14.10275 -13.70766 -13.62790 -13.43202 -13.36868 -12.90979 -12.70557 -12.64026 -12.45682 -12.43932 -12.14287 -11.88772 -11.85705 -11.57085 -11.33995 -11.32604 -11.24762 -10.64896 -10.57483 -10.35081 -9.77928 -9.71372 -9.49406 -8.19176 -6.29115 0.53093 0.58171 1.40600 1.42573 1.50117 1.72735 2.22887 2.40630 2.85494 2.96685 3.05878 3.14088 3.28754 3.43070 3.64996 3.75448 4.01958 4.05916 4.12155 4.22825 4.23500 4.34020 4.42670 4.46636 4.59642 4.63567 4.67699 4.69852 4.77945 4.78572 4.81076 4.90513 5.00621 5.14819 5.22046 5.30343 5.39485 5.45011 5.63133 5.64051 5.66394 5.70016 5.79307 5.86605 6.07579 6.17951 6.22682 6.60697 6.83513 7.13725 7.39961 7.64666 8.91240 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.007994 B = 0.003933 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3501.738499 B = 7117.179791 C = 9797.463476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.013 3.987 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.278 1.278 7 C -0.528 4.528 8 H 0.053 0.947 9 C 0.039 3.961 10 C 0.219 3.781 11 H 0.055 0.945 12 N -0.710 5.710 13 C 0.704 3.296 14 O -0.635 6.635 15 N -0.735 5.735 16 C 0.127 3.873 17 C 0.099 3.901 18 O -0.558 6.558 19 C -0.142 4.142 20 C 0.042 3.958 21 O -0.392 6.392 22 C 0.021 3.979 23 C -0.097 4.097 24 C -0.119 4.119 25 C -0.125 4.125 26 C -0.130 4.130 27 C -0.124 4.124 28 C -0.134 4.134 29 H 0.264 0.736 30 H 0.014 0.986 31 H 0.004 0.996 32 H 0.405 0.595 33 H 0.407 0.593 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.389 0.611 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.110 0.890 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.108 0.892 43 H 0.122 0.878 44 H 0.146 0.854 45 H 0.150 0.850 46 H 0.142 0.858 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.140 -14.855 -9.652 19.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.186 4.186 3 Si 0.780 3.220 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.203 1.203 7 C -0.566 4.566 8 H 0.071 0.929 9 C 0.001 3.999 10 C 0.113 3.887 11 H 0.074 0.926 12 N -0.363 5.363 13 C 0.404 3.596 14 O -0.516 6.516 15 N -0.393 5.393 16 C 0.002 3.998 17 C 0.057 3.943 18 O -0.366 6.366 19 C -0.180 4.180 20 C -0.034 4.034 21 O -0.311 6.311 22 C -0.056 4.056 23 C -0.098 4.098 24 C -0.137 4.137 25 C -0.143 4.143 26 C -0.148 4.148 27 C -0.142 4.142 28 C -0.152 4.152 29 H 0.073 0.927 30 H 0.032 0.968 31 H 0.022 0.978 32 H 0.241 0.759 33 H 0.243 0.757 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.239 0.761 37 H 0.108 0.892 38 H 0.124 0.876 39 H 0.128 0.872 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.126 0.874 43 H 0.140 0.860 44 H 0.163 0.837 45 H 0.168 0.832 46 H 0.160 0.840 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 10.016 -15.391 -9.060 20.477 hybrid contribution -0.670 1.904 0.047 2.019 sum 9.346 -13.487 -9.013 18.721 Atomic orbital electron populations 1.70059 1.07436 1.27760 1.51313 1.25743 0.95519 1.02528 0.94829 0.85668 0.78349 0.79069 0.78919 1.18991 1.20984 1.20312 1.21360 0.92958 0.91566 1.50718 0.92873 1.19129 0.93245 0.91061 0.96450 1.19566 0.91694 0.91769 0.85632 0.92650 1.44904 1.16264 1.61048 1.14066 1.16039 0.80980 0.78975 0.83604 1.90858 1.71392 1.53355 1.36039 1.44818 1.18776 1.64356 1.11389 1.21829 0.82276 0.98995 0.96677 1.22809 0.96583 0.83383 0.91548 1.86597 1.38929 1.19136 1.91959 1.22980 0.95871 0.97574 1.01564 1.23646 0.90973 0.95871 0.92934 1.89160 1.36260 1.74953 1.30773 1.24261 0.92977 0.98192 0.90186 1.20480 0.98228 0.96405 0.94682 1.21052 0.97987 0.96587 0.98097 1.21431 0.98984 0.95025 0.98861 1.21456 0.99964 1.00942 0.92445 1.21373 0.97580 0.95176 1.00106 1.21175 1.00430 0.96604 0.97021 0.92745 0.96793 0.97819 0.75916 0.75695 0.92035 0.90485 0.76123 0.89174 0.87639 0.87207 0.90492 0.90434 0.87432 0.86036 0.83670 0.83243 0.83998 0.87059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.35 13.29 21.44 0.28 -53.07 16 2 C 0.01 0.68 5.46 84.65 0.46 1.15 16 3 Si 0.95 42.86 29.54 68.60 2.03 44.89 16 4 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.53 -28.13 8.84 25.60 0.23 -27.90 16 8 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 9 C 0.04 1.90 4.49 29.85 0.13 2.03 16 10 C 0.22 9.15 2.11 44.25 0.09 9.25 16 11 H 0.06 2.63 7.44 -2.39 -0.02 2.61 16 12 N -0.71 -24.91 4.05 -461.41 -1.87 -26.77 16 13 C 0.70 24.20 8.52 179.06 1.53 25.73 16 14 O -0.63 -27.29 16.01 -3.97 -0.06 -27.35 16 15 N -0.74 -17.37 5.13 -478.54 -2.45 -19.82 16 16 C 0.13 2.72 4.56 86.38 0.39 3.11 16 17 C 0.10 1.71 1.14 -9.78 -0.01 1.70 16 18 O -0.56 -10.91 13.00 -148.98 -1.94 -12.85 16 19 C -0.14 -2.10 6.54 31.61 0.21 -1.89 16 20 C 0.04 0.58 7.63 72.48 0.55 1.14 16 21 O -0.39 -7.79 11.65 -148.98 -1.74 -9.52 16 22 C 0.02 0.34 6.20 72.49 0.45 0.79 16 23 C -0.10 -3.62 4.91 -19.86 -0.10 -3.72 16 24 C -0.12 -3.84 9.32 22.27 0.21 -3.63 16 25 C -0.13 -3.34 10.05 22.27 0.22 -3.12 16 26 C -0.13 -3.28 10.05 22.27 0.22 -3.06 16 27 C -0.12 -3.54 10.05 22.27 0.22 -3.32 16 28 C -0.13 -4.73 9.67 22.27 0.22 -4.52 16 29 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 30 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.00 0.19 8.14 -2.39 -0.02 0.18 16 32 H 0.41 12.58 8.62 -92.70 -0.80 11.78 16 33 H 0.41 7.03 7.40 -92.71 -0.69 6.35 16 34 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.39 5.61 8.25 -74.06 -0.61 5.00 16 37 H 0.09 1.42 8.00 -2.38 -0.02 1.40 16 38 H 0.11 1.26 7.73 -2.39 -0.02 1.25 16 39 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 40 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 41 H 0.08 1.21 7.87 -2.39 -0.02 1.19 16 42 H 0.11 1.50 8.09 -2.39 -0.02 1.48 16 43 H 0.12 3.63 7.73 -2.91 -0.02 3.61 16 44 H 0.15 2.92 8.06 -2.91 -0.02 2.89 16 45 H 0.15 2.68 8.06 -2.91 -0.02 2.65 16 46 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 47 H 0.11 3.96 8.04 -2.91 -0.02 3.94 16 Total: -1.00 -73.32 391.75 -1.81 -75.13 By element: Atomic # 1 Polarization: 36.73 SS G_CDS: -1.09 Total: 35.64 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: 5.03 Total: -6.27 kcal Atomic # 7 Polarization: -95.63 SS G_CDS: -4.03 Total: -99.67 kcal Atomic # 8 Polarization: -45.99 SS G_CDS: -3.74 Total: -49.72 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -73.32 -1.81 -75.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179633753.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.011 kcal (2) G-P(sol) polarization free energy of solvation -73.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 29.27 seconds