Wall clock time and date at job start Tue Mar 31 2020 20:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42902 * 113.99689 * 2 1 4 4 H 1.09001 * 109.47311 * 29.99090 * 3 2 1 5 5 C 1.53004 * 109.46996 * 269.99684 * 3 2 1 6 6 C 1.52994 * 109.47358 * 180.02562 * 5 3 2 7 7 O 1.45201 * 109.47093 * 179.97438 * 6 5 3 8 8 C 1.34706 * 116.99510 * 150.00403 * 7 6 5 9 9 O 1.21464 * 120.00460 * 359.97438 * 8 7 6 10 10 C 1.47772 * 119.99948 * 180.02562 * 8 7 6 11 11 C 1.39967 * 120.02624 * 359.97284 * 10 8 7 12 12 C 1.38320 * 120.35107 * 180.02562 * 11 10 8 13 13 C 1.37760 * 120.41735 * 359.68007 * 12 11 10 14 14 C 1.40755 * 120.05016 * 0.59836 * 13 12 11 15 15 C 1.41437 * 120.17401 * 179.69813 * 14 13 12 16 16 H 1.07999 * 119.99699 * 206.31872 * 15 14 13 17 17 C 1.39934 * 120.00001 * 26.32534 * 15 14 13 18 18 N 1.30833 * 119.99756 * 203.79533 * 17 15 14 19 19 Si 1.86801 * 120.00229 * 23.79655 * 17 15 14 20 20 H 1.48499 * 109.47249 * 263.29399 * 19 17 15 21 21 H 1.48493 * 109.47099 * 23.29745 * 19 17 15 22 22 H 1.48502 * 109.46974 * 143.29511 * 19 17 15 23 23 C 1.39044 * 120.03416 * 179.97438 * 10 8 7 24 24 C 1.53003 * 109.47007 * 59.99957 * 6 5 3 25 25 C 1.53004 * 109.47097 * 300.00203 * 24 6 5 26 26 H 1.08999 * 109.46734 * 180.02562 * 25 24 6 27 27 O 1.42904 * 109.46835 * 299.99649 * 25 24 6 28 28 C 1.42898 * 114.00080 * 269.99920 * 27 25 24 29 29 C 1.52994 * 109.47076 * 149.99652 * 3 2 1 30 30 H 1.09006 * 109.47044 * 60.00635 * 1 2 3 31 31 H 1.08999 * 109.46758 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47117 * 300.00433 * 1 2 3 33 33 H 1.09002 * 109.47170 * 59.99582 * 5 3 2 34 34 H 1.09005 * 109.47007 * 300.00475 * 5 3 2 35 35 H 1.08999 * 109.47112 * 300.00470 * 6 5 3 36 36 H 1.07997 * 119.82734 * 0.02562 * 11 10 8 37 37 H 1.07998 * 119.78958 * 179.97438 * 12 11 10 38 38 H 1.07996 * 119.97358 * 180.30311 * 13 12 11 39 39 H 0.96993 * 119.99921 * 353.18308 * 18 17 15 40 40 H 1.08003 * 120.20096 * 359.95414 * 23 10 8 41 41 H 1.09008 * 109.47259 * 60.00072 * 24 6 5 42 42 H 1.09000 * 109.47099 * 180.02562 * 24 6 5 43 43 H 1.09000 * 109.46714 * 60.00523 * 28 27 25 44 44 H 1.08999 * 109.46794 * 180.02562 * 28 27 25 45 45 H 1.08994 * 109.47063 * 300.00385 * 28 27 25 46 46 H 1.08998 * 109.47663 * 299.99734 * 29 3 2 47 47 H 1.09002 * 109.47183 * 60.00266 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9995 0.5137 5 6 2.2177 1.7714 -1.4425 6 6 2.8405 3.1688 -1.4426 7 8 3.0379 3.6106 -2.8116 8 6 2.9718 4.9362 -3.0419 9 8 2.7547 5.7020 -2.1244 10 6 3.1623 5.4587 -4.4110 11 6 3.4119 4.5768 -5.4688 12 6 3.5918 5.0586 -6.7529 13 6 3.5208 6.4107 -7.0068 14 6 3.2765 7.3135 -5.9549 15 6 3.2094 8.7028 -6.2116 16 1 3.4465 9.4085 -5.4292 17 6 2.8357 9.1629 -7.4792 18 7 3.2023 10.3541 -7.8771 19 14 1.8134 8.0762 -8.6034 20 1 2.7075 7.3673 -9.5538 21 1 1.0693 7.0825 -7.7886 22 1 0.8507 8.9152 -9.3614 23 6 3.0936 6.8268 -4.6496 24 6 4.1892 3.1261 -0.7215 25 6 3.9818 2.6602 0.7210 26 1 4.9426 2.6303 1.2348 27 8 3.1100 3.5704 1.3948 28 6 3.7857 4.6484 2.0455 29 6 3.3588 1.2634 0.7213 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.2569 1.8013 -1.9565 34 1 2.8830 1.0774 -1.9563 35 1 2.1756 3.8630 -0.9287 36 1 3.4645 3.5145 -5.2815 37 1 3.7843 4.3700 -7.5622 38 1 3.6575 6.7787 -8.0129 39 1 3.6469 10.9560 -7.2599 40 1 2.9005 7.5111 -3.8366 41 1 4.8543 2.4319 -1.2354 42 1 4.6328 4.1218 -0.7212 43 1 4.3447 5.2246 1.3083 44 1 3.0549 5.2934 2.5333 45 1 4.4726 4.2490 2.7916 46 1 3.2111 0.9315 1.7490 47 1 4.0242 0.5695 0.2075 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183542227.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:32 Heat of formation + Delta-G solvation = -175.108197 kcal Electronic energy + Delta-G solvation = -29013.379125 eV Core-core repulsion = 24932.465289 eV Total energy + Delta-G solvation = -4080.913835 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 13.90 seconds Orbital eigenvalues (eV) -40.54070 -39.39151 -37.90011 -37.66971 -36.21531 -34.61780 -33.83942 -30.87616 -30.19983 -30.00190 -29.81180 -26.90092 -26.47233 -25.06611 -24.06678 -22.61147 -22.24897 -20.60853 -20.29207 -20.12205 -18.43266 -17.47283 -16.75043 -16.56497 -16.15608 -15.80396 -15.61736 -15.41250 -15.27669 -15.08073 -14.90068 -14.21507 -14.15494 -13.93397 -13.53114 -13.24907 -12.96434 -12.82030 -12.66948 -12.56838 -12.38272 -12.11844 -12.07734 -11.63862 -11.57809 -11.39137 -11.29205 -11.25094 -10.91728 -10.71265 -10.57420 -10.44714 -10.22044 -10.06786 -9.96510 -9.83861 -9.71955 -9.50496 -9.10772 -7.99329 -7.94732 -7.36649 -4.64599 1.68197 2.52819 2.92744 3.11503 3.27622 3.32692 3.46869 3.50067 3.52899 3.93563 4.39538 4.44704 4.58941 4.69215 4.79130 4.81416 4.98966 5.04452 5.10867 5.14129 5.17337 5.21617 5.25723 5.27227 5.31346 5.42615 5.45758 5.51056 5.63157 5.66055 5.79710 5.89461 5.90170 5.99615 6.02405 6.14307 6.35197 6.59422 6.68976 6.80656 6.92843 6.94552 6.98458 7.36353 7.44500 7.46336 7.60234 7.74867 8.25254 8.30601 8.37962 8.63330 9.89281 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018513 B = 0.002648 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.126655 B =10570.727447 C =11395.228429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.098 3.902 4 H 0.074 0.926 5 C -0.137 4.137 6 C 0.098 3.902 7 O -0.348 6.348 8 C 0.511 3.489 9 O -0.518 6.518 10 C -0.094 4.094 11 C -0.197 4.197 12 C -0.086 4.086 13 C -0.218 4.218 14 C 0.084 3.916 15 C -0.514 4.514 16 H 0.079 0.921 17 C 0.044 3.956 18 N -0.807 5.807 19 Si 1.069 2.931 20 H -0.275 1.275 21 H -0.261 1.261 22 H -0.287 1.287 23 C -0.143 4.143 24 C -0.160 4.160 25 C 0.096 3.904 26 H 0.074 0.926 27 O -0.382 6.382 28 C 0.031 3.969 29 C -0.113 4.113 30 H 0.043 0.957 31 H 0.085 0.915 32 H 0.042 0.958 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.109 0.891 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.288 0.712 40 H 0.113 0.887 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.045 0.955 44 H 0.086 0.914 45 H 0.040 0.960 46 H 0.079 0.921 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.777 -16.649 14.628 22.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.303 6.303 3 C 0.040 3.960 4 H 0.092 0.908 5 C -0.175 4.175 6 C 0.042 3.958 7 O -0.266 6.266 8 C 0.358 3.642 9 O -0.408 6.408 10 C -0.095 4.095 11 C -0.216 4.216 12 C -0.104 4.104 13 C -0.237 4.237 14 C 0.081 3.919 15 C -0.542 4.542 16 H 0.097 0.903 17 C -0.177 4.177 18 N -0.429 5.429 19 Si 0.895 3.105 20 H -0.201 1.201 21 H -0.185 1.185 22 H -0.214 1.214 23 C -0.163 4.163 24 C -0.198 4.198 25 C 0.038 3.962 26 H 0.092 0.908 27 O -0.301 6.301 28 C -0.065 4.065 29 C -0.150 4.150 30 H 0.062 0.938 31 H 0.104 0.896 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.110 0.890 36 H 0.127 0.873 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.100 0.900 40 H 0.131 0.869 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.063 0.937 44 H 0.105 0.895 45 H 0.059 0.941 46 H 0.097 0.903 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.536 -16.591 13.429 21.400 hybrid contribution 0.905 0.703 1.650 2.009 sum -0.631 -15.888 15.078 21.913 Atomic orbital electron populations 1.22812 0.80965 1.02662 1.00264 1.87882 1.19807 1.27574 1.95001 1.21894 0.95230 0.84673 0.94158 0.90842 1.22077 1.02287 0.95258 0.97841 1.22349 0.97115 0.95861 0.80439 1.86647 1.82885 1.25929 1.31101 1.21845 0.72207 0.79872 0.90292 1.90747 1.46013 1.57951 1.46044 1.18789 1.07899 0.94418 0.88375 1.20600 1.10912 0.97745 0.92372 1.20595 0.99138 0.95050 0.95621 1.21261 1.10160 0.93375 0.98927 1.17643 0.89855 0.93708 0.90647 1.20623 1.41921 0.91982 0.99631 0.90294 1.27309 0.94456 0.98513 0.97382 1.70525 1.26926 1.08632 1.36804 0.83634 0.76534 0.74860 0.75504 1.20133 1.18512 1.21385 1.21254 1.05212 0.92089 0.97709 1.22486 0.98026 1.03388 0.95924 1.22013 0.93553 0.89003 0.91617 0.90837 1.87910 1.33872 1.38361 1.69952 1.22802 0.98036 0.89602 0.96099 1.21714 0.96197 0.95258 1.01844 0.93825 0.89637 0.93926 0.90757 0.89932 0.89042 0.87284 0.87831 0.87461 0.90012 0.86933 0.89705 0.90707 0.93654 0.89536 0.94141 0.90254 0.89427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.82 101.05 1.09 1.34 16 2 O -0.38 -4.13 10.35 -35.23 -0.36 -4.49 16 3 C 0.10 1.05 2.47 -26.73 -0.07 0.98 16 4 H 0.07 0.82 7.33 -51.93 -0.38 0.44 16 5 C -0.14 -1.63 5.20 -26.73 -0.14 -1.77 16 6 C 0.10 1.40 2.31 -26.73 -0.06 1.34 16 7 O -0.35 -6.10 9.12 -40.51 -0.37 -6.47 16 8 C 0.51 10.51 7.87 34.63 0.27 10.78 16 9 O -0.52 -11.43 15.59 -19.24 -0.30 -11.73 16 10 C -0.09 -2.08 5.87 -105.05 -0.62 -2.69 16 11 C -0.20 -4.05 9.62 -38.90 -0.37 -4.43 16 12 C -0.09 -1.78 10.01 -39.73 -0.40 -2.18 16 13 C -0.22 -5.08 7.35 -38.81 -0.29 -5.37 16 14 C 0.08 2.13 5.14 -106.87 -0.55 1.58 16 15 C -0.51 -13.61 9.40 -37.73 -0.35 -13.97 16 16 H 0.08 2.16 8.06 -52.49 -0.42 1.74 16 17 C 0.04 1.13 5.33 -17.34 -0.09 1.04 16 18 N -0.81 -21.21 13.65 55.55 0.76 -20.45 16 19 Si 1.07 23.52 24.99 -169.99 -4.25 19.27 16 20 H -0.27 -5.68 6.68 56.52 0.38 -5.31 16 21 H -0.26 -5.72 7.01 56.52 0.40 -5.32 16 22 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 23 C -0.14 -3.47 9.34 -38.43 -0.36 -3.83 16 24 C -0.16 -1.96 5.27 -26.73 -0.14 -2.10 16 25 C 0.10 0.96 2.92 -26.76 -0.08 0.88 16 26 H 0.07 0.60 7.78 -51.93 -0.40 0.19 16 27 O -0.38 -4.42 9.00 -35.23 -0.32 -4.73 16 28 C 0.03 0.30 10.82 101.05 1.09 1.39 16 29 C -0.11 -1.04 5.31 -26.76 -0.14 -1.18 16 30 H 0.04 0.36 7.87 -51.93 -0.41 -0.05 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.04 0.32 8.08 -51.93 -0.42 -0.10 16 33 H 0.07 0.90 7.87 -51.93 -0.41 0.49 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.09 1.48 6.70 -51.93 -0.35 1.13 16 36 H 0.11 1.99 7.59 -52.49 -0.40 1.59 16 37 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 38 H 0.11 2.45 4.69 -52.49 -0.25 2.20 16 39 H 0.29 7.37 8.73 -40.82 -0.36 7.01 16 40 H 0.11 2.75 7.64 -52.48 -0.40 2.35 16 41 H 0.08 0.93 8.14 -51.92 -0.42 0.51 16 42 H 0.07 1.03 7.87 -51.93 -0.41 0.62 16 43 H 0.04 0.47 7.87 -51.93 -0.41 0.06 16 44 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.04 0.30 8.08 -51.93 -0.42 -0.12 16 46 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 381.62 15.07 5.75 5.75 Total: -1.00 -28.86 381.62 -7.50 -36.37 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -7.22 Total: 4.67 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: -1.20 Total: -18.18 kcal Atomic # 7 Polarization: -21.21 SS G_CDS: 0.76 Total: -20.45 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -1.35 Total: -27.43 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -4.25 Total: 19.27 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -28.86 -7.50 -36.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183542227.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.739 kcal (2) G-P(sol) polarization free energy of solvation -28.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 13.90 seconds