Wall clock time and date at job start Tue Mar 31 2020 20:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42902 * 113.99689 * 2 1 4 4 H 1.09001 * 109.47311 * 29.99090 * 3 2 1 5 5 C 1.53004 * 109.46996 * 269.99684 * 3 2 1 6 6 C 1.52994 * 109.47358 * 180.02562 * 5 3 2 7 7 O 1.45201 * 109.47093 * 179.97438 * 6 5 3 8 8 C 1.34706 * 116.99510 * 150.00403 * 7 6 5 9 9 O 1.21464 * 120.00460 * 359.97438 * 8 7 6 10 10 C 1.47772 * 119.99948 * 180.02562 * 8 7 6 11 11 C 1.39967 * 120.02624 * 359.97284 * 10 8 7 12 12 C 1.38320 * 120.35107 * 180.02562 * 11 10 8 13 13 C 1.37760 * 120.41735 * 359.68007 * 12 11 10 14 14 C 1.40755 * 120.05016 * 0.59836 * 13 12 11 15 15 C 1.41437 * 120.17401 * 179.69813 * 14 13 12 16 16 H 1.07999 * 119.99699 * 206.31872 * 15 14 13 17 17 C 1.39934 * 120.00001 * 26.32534 * 15 14 13 18 18 N 1.30833 * 119.99756 * 203.79533 * 17 15 14 19 19 Si 1.86801 * 120.00229 * 23.79655 * 17 15 14 20 20 H 1.48499 * 109.47249 * 263.29399 * 19 17 15 21 21 H 1.48493 * 109.47099 * 23.29745 * 19 17 15 22 22 H 1.48502 * 109.46974 * 143.29511 * 19 17 15 23 23 C 1.39044 * 120.03416 * 179.97438 * 10 8 7 24 24 C 1.53003 * 109.47007 * 59.99957 * 6 5 3 25 25 C 1.53004 * 109.47097 * 300.00203 * 24 6 5 26 26 H 1.08999 * 109.46734 * 180.02562 * 25 24 6 27 27 O 1.42904 * 109.46835 * 299.99649 * 25 24 6 28 28 C 1.42898 * 114.00080 * 269.99920 * 27 25 24 29 29 C 1.52994 * 109.47076 * 149.99652 * 3 2 1 30 30 H 1.09006 * 109.47044 * 60.00635 * 1 2 3 31 31 H 1.08999 * 109.46758 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47117 * 300.00433 * 1 2 3 33 33 H 1.09002 * 109.47170 * 59.99582 * 5 3 2 34 34 H 1.09005 * 109.47007 * 300.00475 * 5 3 2 35 35 H 1.08999 * 109.47112 * 300.00470 * 6 5 3 36 36 H 1.07997 * 119.82734 * 0.02562 * 11 10 8 37 37 H 1.07998 * 119.78958 * 179.97438 * 12 11 10 38 38 H 1.07996 * 119.97358 * 180.30311 * 13 12 11 39 39 H 0.96993 * 119.99921 * 353.18308 * 18 17 15 40 40 H 1.08003 * 120.20096 * 359.95414 * 23 10 8 41 41 H 1.09008 * 109.47259 * 60.00072 * 24 6 5 42 42 H 1.09000 * 109.47099 * 180.02562 * 24 6 5 43 43 H 1.09000 * 109.46714 * 60.00523 * 28 27 25 44 44 H 1.08999 * 109.46794 * 180.02562 * 28 27 25 45 45 H 1.08994 * 109.47063 * 300.00385 * 28 27 25 46 46 H 1.08998 * 109.47663 * 299.99734 * 29 3 2 47 47 H 1.09002 * 109.47183 * 60.00266 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9995 0.5137 5 6 2.2177 1.7714 -1.4425 6 6 2.8405 3.1688 -1.4426 7 8 3.0379 3.6106 -2.8116 8 6 2.9718 4.9362 -3.0419 9 8 2.7547 5.7020 -2.1244 10 6 3.1623 5.4587 -4.4110 11 6 3.4119 4.5768 -5.4688 12 6 3.5918 5.0586 -6.7529 13 6 3.5208 6.4107 -7.0068 14 6 3.2765 7.3135 -5.9549 15 6 3.2094 8.7028 -6.2116 16 1 3.4465 9.4085 -5.4292 17 6 2.8357 9.1629 -7.4792 18 7 3.2023 10.3541 -7.8771 19 14 1.8134 8.0762 -8.6034 20 1 2.7075 7.3673 -9.5538 21 1 1.0693 7.0825 -7.7886 22 1 0.8507 8.9152 -9.3614 23 6 3.0936 6.8268 -4.6496 24 6 4.1892 3.1261 -0.7215 25 6 3.9818 2.6602 0.7210 26 1 4.9426 2.6303 1.2348 27 8 3.1100 3.5704 1.3948 28 6 3.7857 4.6484 2.0455 29 6 3.3588 1.2634 0.7213 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.2569 1.8013 -1.9565 34 1 2.8830 1.0774 -1.9563 35 1 2.1756 3.8630 -0.9287 36 1 3.4645 3.5145 -5.2815 37 1 3.7843 4.3700 -7.5622 38 1 3.6575 6.7787 -8.0129 39 1 3.6469 10.9560 -7.2599 40 1 2.9005 7.5111 -3.8366 41 1 4.8543 2.4319 -1.2354 42 1 4.6328 4.1218 -0.7212 43 1 4.3447 5.2246 1.3083 44 1 3.0549 5.2934 2.5333 45 1 4.4726 4.2490 2.7916 46 1 3.2111 0.9315 1.7490 47 1 4.0242 0.5695 0.2075 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183542227.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:25 Heat of formation + Delta-G solvation = -191.298062 kcal Electronic energy + Delta-G solvation = -29014.081170 eV Core-core repulsion = 24932.465289 eV Total energy + Delta-G solvation = -4081.615881 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 6.80 seconds Orbital eigenvalues (eV) -41.86335 -40.55569 -39.39740 -38.68892 -37.66170 -35.79657 -35.57033 -32.56606 -31.91984 -31.06337 -30.79692 -27.65283 -27.19776 -26.93037 -25.65011 -23.51185 -23.45983 -22.40796 -21.89056 -21.05518 -20.22178 -18.72343 -18.24144 -17.56805 -17.40624 -17.06722 -16.83470 -16.57511 -16.17302 -16.11119 -16.00037 -15.85026 -15.65451 -15.20222 -14.97725 -14.55251 -14.31485 -14.07975 -13.94480 -13.89197 -13.57263 -13.34206 -13.22742 -12.99988 -12.84092 -12.52332 -12.43369 -12.38687 -12.21040 -12.07397 -11.96966 -11.78602 -11.70351 -11.63234 -11.35284 -11.19680 -10.96007 -10.67818 -10.58816 -9.84018 -9.77124 -9.33177 -6.65597 -0.08478 0.71913 1.35377 1.51762 1.54425 1.61239 1.78576 2.15738 2.57605 2.68936 2.74484 3.35826 3.52761 3.56639 3.68952 3.80937 3.91728 4.11151 4.13673 4.20135 4.21809 4.27752 4.37095 4.40061 4.46797 4.50453 4.52657 4.53714 4.55928 4.69458 4.77949 4.79828 4.82646 4.84011 4.87083 4.91981 5.02009 5.07547 5.11565 5.16512 5.35702 5.40622 5.59782 5.64888 5.72266 5.92743 6.15808 6.18311 6.29043 6.45224 6.70750 6.72612 7.91127 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018513 B = 0.002648 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.126655 B =10570.727447 C =11395.228429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.393 6.393 3 C 0.102 3.898 4 H 0.063 0.937 5 C -0.130 4.130 6 C 0.093 3.907 7 O -0.342 6.342 8 C 0.516 3.484 9 O -0.541 6.541 10 C -0.103 4.103 11 C -0.169 4.169 12 C -0.081 4.081 13 C -0.218 4.218 14 C 0.068 3.932 15 C -0.553 4.553 16 H 0.044 0.956 17 C 0.014 3.986 18 N -0.833 5.833 19 Si 1.099 2.901 20 H -0.245 1.245 21 H -0.261 1.261 22 H -0.278 1.278 23 C -0.169 4.169 24 C -0.159 4.159 25 C 0.098 3.902 26 H 0.099 0.901 27 O -0.402 6.402 28 C 0.027 3.973 29 C -0.108 4.108 30 H 0.041 0.959 31 H 0.104 0.896 32 H 0.048 0.952 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.145 0.855 37 H 0.153 0.847 38 H 0.116 0.884 39 H 0.279 0.721 40 H 0.091 0.909 41 H 0.103 0.897 42 H 0.052 0.948 43 H 0.029 0.971 44 H 0.089 0.911 45 H 0.066 0.934 46 H 0.090 0.910 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.496 -21.183 14.352 25.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.312 6.312 3 C 0.044 3.956 4 H 0.081 0.919 5 C -0.167 4.167 6 C 0.039 3.961 7 O -0.258 6.258 8 C 0.363 3.637 9 O -0.433 6.433 10 C -0.104 4.104 11 C -0.188 4.188 12 C -0.099 4.099 13 C -0.237 4.237 14 C 0.065 3.935 15 C -0.582 4.582 16 H 0.062 0.938 17 C -0.201 4.201 18 N -0.456 5.456 19 Si 0.918 3.082 20 H -0.169 1.169 21 H -0.186 1.186 22 H -0.204 1.204 23 C -0.189 4.189 24 C -0.196 4.196 25 C 0.040 3.960 26 H 0.117 0.883 27 O -0.321 6.321 28 C -0.069 4.069 29 C -0.146 4.146 30 H 0.060 0.940 31 H 0.122 0.878 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.086 0.914 36 H 0.163 0.837 37 H 0.171 0.829 38 H 0.133 0.867 39 H 0.089 0.911 40 H 0.110 0.890 41 H 0.121 0.879 42 H 0.071 0.929 43 H 0.048 0.952 44 H 0.108 0.892 45 H 0.084 0.916 46 H 0.109 0.891 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.238 -21.141 13.166 24.937 hybrid contribution 0.819 1.895 1.916 2.817 sum -0.419 -19.246 15.082 24.455 Atomic orbital electron populations 1.22994 0.79864 1.03999 1.00508 1.87867 1.21073 1.27266 1.94972 1.21836 0.96033 0.84619 0.93113 0.91873 1.22066 1.01992 0.93563 0.99113 1.22643 0.98352 0.96535 0.78616 1.86597 1.82207 1.23717 1.33319 1.21583 0.71842 0.80813 0.89475 1.90742 1.47019 1.58902 1.46644 1.19001 1.07530 0.93852 0.90037 1.21104 1.06894 0.99146 0.91657 1.21101 0.97226 0.94537 0.97014 1.21511 1.09144 0.94426 0.98603 1.17769 0.90445 0.93525 0.91743 1.20568 1.45362 0.92537 0.99715 0.93806 1.28432 0.94280 0.99052 0.98333 1.70599 1.28893 1.09338 1.36750 0.83313 0.76036 0.74074 0.74780 1.16944 1.18551 1.20402 1.21171 1.07295 0.93217 0.97169 1.22522 0.96716 1.02798 0.97605 1.22128 0.94722 0.89011 0.90136 0.88287 1.87893 1.35084 1.38944 1.70221 1.22899 0.98439 0.89378 0.96159 1.21730 0.95457 0.94835 1.02538 0.93986 0.87807 0.93338 0.91201 0.88889 0.91416 0.83738 0.82949 0.86686 0.91055 0.89044 0.87881 0.92904 0.95184 0.89222 0.91587 0.89120 0.87849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.82 113.37 1.23 1.55 16 2 O -0.39 -7.46 10.35 -148.98 -1.54 -9.00 16 3 C 0.10 1.96 2.47 30.59 0.08 2.03 16 4 H 0.06 1.34 7.33 -2.39 -0.02 1.32 16 5 C -0.13 -2.82 5.20 30.59 0.16 -2.66 16 6 C 0.09 2.57 2.31 30.59 0.07 2.64 16 7 O -0.34 -11.40 9.12 -56.16 -0.51 -11.91 16 8 C 0.52 21.05 7.87 70.34 0.55 21.61 16 9 O -0.54 -24.65 15.59 19.95 0.31 -24.33 16 10 C -0.10 -4.48 5.87 -20.14 -0.12 -4.60 16 11 C -0.17 -6.30 9.62 22.71 0.22 -6.09 16 12 C -0.08 -3.00 10.01 22.18 0.22 -2.78 16 13 C -0.22 -9.71 7.35 22.77 0.17 -9.55 16 14 C 0.07 3.48 5.14 -21.32 -0.11 3.37 16 15 C -0.55 -31.07 9.40 23.47 0.22 -30.85 16 16 H 0.04 2.65 8.06 -2.91 -0.02 2.63 16 17 C 0.01 0.72 5.33 85.25 0.45 1.18 16 18 N -0.83 -45.67 13.65 21.82 0.30 -45.38 16 19 Si 1.10 46.64 24.99 68.60 1.71 48.35 16 20 H -0.24 -9.18 6.68 99.48 0.66 -8.52 16 21 H -0.26 -10.97 7.01 99.48 0.70 -10.28 16 22 H -0.28 -11.29 7.11 99.48 0.71 -10.59 16 23 C -0.17 -8.46 9.34 23.02 0.21 -8.24 16 24 C -0.16 -3.62 5.27 30.60 0.16 -3.46 16 25 C 0.10 1.74 2.92 30.58 0.09 1.83 16 26 H 0.10 1.29 7.78 -2.39 -0.02 1.27 16 27 O -0.40 -8.88 9.00 -148.98 -1.34 -10.23 16 28 C 0.03 0.50 10.82 113.37 1.23 1.73 16 29 C -0.11 -1.68 5.31 30.57 0.16 -1.51 16 30 H 0.04 0.62 7.87 -2.38 -0.02 0.60 16 31 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.05 0.64 8.08 -2.39 -0.02 0.62 16 33 H 0.07 1.57 7.87 -2.39 -0.02 1.55 16 34 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 35 H 0.07 2.22 6.70 -2.39 -0.02 2.20 16 36 H 0.14 4.44 7.59 -2.91 -0.02 4.42 16 37 H 0.15 4.25 8.06 -2.91 -0.02 4.23 16 38 H 0.12 4.95 4.69 -2.91 -0.01 4.93 16 39 H 0.28 15.25 8.73 -92.71 -0.81 14.45 16 40 H 0.09 4.83 7.64 -2.91 -0.02 4.81 16 41 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 42 H 0.05 1.44 7.87 -2.39 -0.02 1.42 16 43 H 0.03 0.63 7.87 -2.39 -0.02 0.61 16 44 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.07 0.86 8.08 -2.39 -0.02 0.84 16 46 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -65.66 381.62 4.80 -60.86 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: 0.87 Total: 25.42 kcal Atomic # 6 Polarization: -38.79 SS G_CDS: 4.99 Total: -33.79 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: 0.30 Total: -45.38 kcal Atomic # 8 Polarization: -52.38 SS G_CDS: -3.08 Total: -55.47 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 1.71 Total: 48.35 kcal Total: -65.66 4.80 -60.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183542227.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.438 kcal (2) G-P(sol) polarization free energy of solvation -65.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.80 seconds