Wall clock time and date at job start Tue Mar 31 2020 20:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 113.99621 * 2 1 4 4 H 1.08997 * 109.46921 * 329.99807 * 3 2 1 5 5 C 1.53001 * 109.47058 * 90.00051 * 3 2 1 6 6 C 1.52999 * 109.47138 * 59.99740 * 5 3 2 7 7 O 1.45202 * 109.46994 * 179.97438 * 6 5 3 8 8 C 1.34706 * 116.99756 * 150.00089 * 7 6 5 9 9 O 1.21461 * 120.00315 * 359.97438 * 8 7 6 10 10 C 1.47776 * 119.99590 * 179.72663 * 8 7 6 11 11 C 1.39966 * 120.03327 * 0.27099 * 10 8 7 12 12 C 1.38312 * 120.35468 * 179.97438 * 11 10 8 13 13 C 1.37765 * 120.41712 * 0.02562 * 12 11 10 14 14 C 1.40752 * 120.05112 * 359.97438 * 13 12 11 15 15 C 1.41431 * 120.17389 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00305 * 24.35700 * 15 14 13 17 17 C 1.39939 * 119.99966 * 204.35992 * 15 14 13 18 18 N 1.30821 * 120.00059 * 17.74046 * 17 15 14 19 19 Si 1.86797 * 120.00225 * 197.73759 * 17 15 14 20 20 H 1.48499 * 109.47139 * 89.99829 * 19 17 15 21 21 H 1.48500 * 109.47601 * 210.00203 * 19 17 15 22 22 H 1.48497 * 109.47210 * 330.00310 * 19 17 15 23 23 C 1.39050 * 120.02710 * 179.97438 * 10 8 7 24 24 C 1.52998 * 109.47044 * 60.00079 * 6 5 3 25 25 C 1.52999 * 109.47014 * 299.99398 * 24 6 5 26 26 H 1.08993 * 109.47702 * 300.00370 * 25 24 6 27 27 O 1.42909 * 109.47068 * 179.97438 * 25 24 6 28 28 C 1.42900 * 113.99394 * 90.00456 * 27 25 24 29 29 C 1.53000 * 109.46682 * 209.99969 * 3 2 1 30 30 H 1.08995 * 109.47222 * 300.00057 * 1 2 3 31 31 H 1.09004 * 109.46920 * 60.00096 * 1 2 3 32 32 H 1.09002 * 109.46951 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47242 * 299.99607 * 5 3 2 34 34 H 1.08996 * 109.46723 * 179.97438 * 5 3 2 35 35 H 1.08996 * 109.47364 * 299.99669 * 6 5 3 36 36 H 1.08005 * 119.82159 * 359.97438 * 11 10 8 37 37 H 1.07999 * 119.79058 * 180.02562 * 12 11 10 38 38 H 1.08003 * 119.96994 * 180.02562 * 13 12 11 39 39 H 0.97002 * 120.00633 * 180.02562 * 18 17 15 40 40 H 1.07998 * 120.20896 * 359.97438 * 23 10 8 41 41 H 1.08997 * 109.47595 * 60.00349 * 24 6 5 42 42 H 1.09008 * 109.46831 * 179.97438 * 24 6 5 43 43 H 1.09004 * 109.46722 * 180.02562 * 28 27 25 44 44 H 1.09002 * 109.47498 * 299.99746 * 28 27 25 45 45 H 1.08998 * 109.47362 * 60.00375 * 28 27 25 46 46 H 1.08990 * 109.47672 * 60.00071 * 29 3 2 47 47 H 1.09005 * 109.46956 * 180.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 -0.5139 5 6 2.2176 1.7714 1.4425 6 6 3.1514 0.7975 2.1638 7 8 3.3487 1.2400 3.5326 8 6 3.5813 0.2870 4.4558 9 8 3.6179 -0.8815 4.1266 10 6 3.7975 0.6639 5.8682 11 6 3.7550 2.0102 6.2485 12 6 3.9558 2.3704 7.5687 13 6 4.2005 1.4088 8.5245 14 6 4.2470 0.0498 8.1613 15 6 4.4974 -0.9396 9.1405 16 1 4.2693 -0.7428 10.1777 17 6 5.0407 -2.1734 8.7655 18 7 5.6340 -2.3019 7.6067 19 14 4.9189 -3.6371 9.9197 20 1 3.6664 -4.3846 9.6408 21 1 6.0859 -4.5312 9.7103 22 1 4.9074 -3.1593 11.3256 23 6 4.0371 -0.3193 6.8219 24 6 4.5000 0.7553 1.4425 25 6 4.2926 0.2893 0.0001 26 1 3.8493 -0.7064 0.0000 27 8 5.5523 0.2505 -0.6738 28 6 6.2279 -1.0045 -0.5710 29 6 3.3588 1.2633 -0.7213 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.2568 1.8015 1.9563 34 1 2.6613 2.7670 1.4424 35 1 2.7081 -0.1983 2.1638 36 1 3.5643 2.7720 5.5069 37 1 3.9207 3.4119 7.8520 38 1 4.3559 1.6981 9.5534 39 1 6.0103 -3.1572 7.3465 40 1 4.0657 -1.3599 6.5342 41 1 4.9434 1.7510 1.4426 42 1 5.1655 0.0617 1.9567 43 1 7.1751 -0.9522 -1.1078 44 1 6.4174 -1.2303 0.4784 45 1 5.6068 -1.7881 -1.0049 46 1 3.2111 0.9314 -1.7488 47 1 3.8024 2.2590 -0.7209 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183542244.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:57 Heat of formation + Delta-G solvation = -171.842347 kcal Electronic energy + Delta-G solvation = -29242.455462 eV Core-core repulsion = 25161.683245 eV Total energy + Delta-G solvation = -4080.772218 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 4.26 seconds Orbital eigenvalues (eV) -40.37087 -39.21782 -37.79246 -37.38757 -35.98921 -34.48650 -33.74802 -30.64466 -29.85854 -29.77452 -29.47367 -26.84298 -26.38168 -25.41229 -23.85289 -22.46872 -21.93540 -20.98704 -20.02285 -19.73460 -17.88636 -17.28522 -16.45632 -16.30509 -15.77836 -15.69024 -15.60593 -15.29637 -15.17231 -14.90195 -14.64920 -14.62235 -14.07125 -13.48016 -13.30477 -13.17461 -12.80160 -12.69949 -12.65365 -12.45096 -12.25195 -11.90321 -11.72817 -11.53821 -11.32905 -11.24902 -11.17700 -11.09924 -10.97907 -10.75182 -10.54030 -10.36636 -10.22915 -10.04964 -9.87033 -9.73184 -9.65751 -9.39043 -9.25819 -7.75044 -7.56915 -6.84055 -4.45122 1.98777 2.77004 3.05664 3.08870 3.12717 3.15387 3.51926 3.58699 3.64803 3.89139 4.46212 4.56949 4.72117 4.80978 4.90430 4.94057 5.03953 5.13878 5.18686 5.25798 5.27790 5.32368 5.39837 5.43678 5.47955 5.53460 5.58480 5.64419 5.71433 5.78297 5.95257 5.96463 6.09481 6.15193 6.25077 6.39733 6.65496 6.92757 6.93844 6.95929 7.03934 7.11393 7.15998 7.30301 7.67610 7.74817 7.89893 8.09376 8.43192 8.58632 8.75865 8.77966 10.11299 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013430 B = 0.002962 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.340006 B = 9452.263293 C =10062.777682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.382 6.382 3 C 0.096 3.904 4 H 0.076 0.924 5 C -0.139 4.139 6 C 0.097 3.903 7 O -0.351 6.351 8 C 0.511 3.489 9 O -0.516 6.516 10 C -0.115 4.115 11 C -0.194 4.194 12 C -0.104 4.104 13 C -0.202 4.202 14 C 0.096 3.904 15 C -0.461 4.461 16 H 0.083 0.917 17 C 0.073 3.927 18 N -0.787 5.787 19 Si 0.911 3.089 20 H -0.266 1.266 21 H -0.277 1.277 22 H -0.261 1.261 23 C -0.090 4.090 24 C -0.156 4.156 25 C 0.098 3.902 26 H 0.073 0.927 27 O -0.386 6.386 28 C 0.030 3.970 29 C -0.113 4.113 30 H 0.043 0.957 31 H 0.041 0.959 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.285 0.715 40 H 0.135 0.865 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.045 0.955 45 H 0.042 0.958 46 H 0.078 0.922 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.662 4.780 -15.698 17.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.301 6.301 3 C 0.038 3.962 4 H 0.094 0.906 5 C -0.177 4.177 6 C 0.042 3.958 7 O -0.269 6.269 8 C 0.358 3.642 9 O -0.406 6.406 10 C -0.116 4.116 11 C -0.214 4.214 12 C -0.122 4.122 13 C -0.222 4.222 14 C 0.093 3.907 15 C -0.489 4.489 16 H 0.101 0.899 17 C -0.146 4.146 18 N -0.411 5.411 19 Si 0.736 3.264 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.185 1.185 23 C -0.109 4.109 24 C -0.194 4.194 25 C 0.041 3.959 26 H 0.091 0.909 27 O -0.305 6.305 28 C -0.067 4.067 29 C -0.150 4.150 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.121 0.879 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.096 0.904 40 H 0.153 0.847 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.103 0.897 44 H 0.063 0.937 45 H 0.060 0.940 46 H 0.097 0.903 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.325 4.243 -16.075 17.457 hybrid contribution -0.153 -0.810 0.597 1.018 sum -5.478 3.433 -15.478 16.774 Atomic orbital electron populations 1.22816 0.80977 1.02973 0.99945 1.87959 1.19760 1.27374 1.94978 1.22064 0.94483 0.85235 0.94416 0.90601 1.22134 1.00308 0.99930 0.95335 1.22307 0.95085 0.99728 0.78686 1.86644 1.82371 1.40034 1.17833 1.21889 0.72083 0.83274 0.86967 1.90747 1.48105 1.19957 1.81772 1.18854 1.09680 0.95354 0.87721 1.20559 1.10994 0.93905 0.95910 1.20507 1.00960 0.97536 0.93184 1.21185 1.10029 0.92953 0.98063 1.17539 0.89359 0.91730 0.92027 1.19579 1.36770 0.97158 0.95439 0.89930 1.25964 0.92547 1.00305 0.95740 1.69778 1.24351 1.26539 1.20429 0.86254 0.78804 0.80353 0.81026 1.19143 1.20211 1.18528 1.21658 0.98330 0.98704 0.92216 1.22425 0.97712 1.03521 0.95788 1.21906 0.83977 0.99742 0.90320 0.90920 1.87852 1.33612 1.34376 1.74645 1.22803 0.97045 0.85575 1.01246 1.21727 0.92814 1.00856 0.99639 0.93824 0.94028 0.89552 0.90562 0.89523 0.89160 0.87910 0.88556 0.88358 0.90424 0.84727 0.90272 0.90878 0.89721 0.93671 0.93985 0.90334 0.89439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.35 16 2 O -0.38 -4.38 9.00 -35.23 -0.32 -4.70 16 3 C 0.10 0.96 2.92 -26.73 -0.08 0.88 16 4 H 0.08 0.57 7.79 -51.93 -0.40 0.17 16 5 C -0.14 -1.65 5.29 -26.73 -0.14 -1.79 16 6 C 0.10 1.54 2.31 -26.73 -0.06 1.48 16 7 O -0.35 -6.77 9.12 -40.51 -0.37 -7.14 16 8 C 0.51 11.70 7.87 34.63 0.27 11.98 16 9 O -0.52 -12.81 15.59 -19.24 -0.30 -13.11 16 10 C -0.11 -2.80 5.87 -105.05 -0.62 -3.42 16 11 C -0.19 -4.31 9.62 -38.91 -0.37 -4.69 16 12 C -0.10 -2.25 10.01 -39.73 -0.40 -2.64 16 13 C -0.20 -4.79 9.78 -38.81 -0.38 -5.17 16 14 C 0.10 2.52 5.57 -106.88 -0.60 1.93 16 15 C -0.46 -11.99 9.05 -37.73 -0.34 -12.33 16 16 H 0.08 2.04 7.91 -52.48 -0.41 1.62 16 17 C 0.07 1.84 5.14 -17.35 -0.09 1.75 16 18 N -0.79 -20.67 10.96 55.55 0.61 -20.06 16 19 Si 0.91 18.63 29.59 -169.99 -5.03 13.60 16 20 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 21 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 22 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 23 C -0.09 -2.39 8.24 -38.42 -0.32 -2.71 16 24 C -0.16 -2.34 5.17 -26.73 -0.14 -2.48 16 25 C 0.10 1.26 2.47 -26.73 -0.07 1.20 16 26 H 0.07 0.99 7.33 -51.93 -0.38 0.61 16 27 O -0.39 -5.08 10.35 -35.23 -0.36 -5.45 16 28 C 0.03 0.33 10.82 101.05 1.09 1.43 16 29 C -0.11 -1.15 5.31 -26.73 -0.14 -1.30 16 30 H 0.04 0.36 7.87 -51.93 -0.41 -0.04 16 31 H 0.04 0.28 8.09 -51.93 -0.42 -0.14 16 32 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.88 7.87 -51.93 -0.41 0.47 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 1.61 6.70 -51.93 -0.35 1.26 16 36 H 0.10 2.05 7.59 -52.48 -0.40 1.65 16 37 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.10 2.14 8.06 -52.48 -0.42 1.72 16 39 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 40 H 0.14 3.84 5.75 -52.49 -0.30 3.54 16 41 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.07 1.26 7.87 -51.92 -0.41 0.85 16 43 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.04 0.54 7.87 -51.93 -0.41 0.13 16 45 H 0.04 0.42 8.09 -51.93 -0.42 0.00 16 46 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 386.17 15.07 5.82 5.82 Total: -1.00 -29.86 386.17 -8.47 -38.33 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -7.24 Total: 7.26 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: -1.28 Total: -14.54 kcal Atomic # 7 Polarization: -20.67 SS G_CDS: 0.61 Total: -20.06 kcal Atomic # 8 Polarization: -29.06 SS G_CDS: -1.35 Total: -30.41 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.86 -8.47 -38.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183542244.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.510 kcal (2) G-P(sol) polarization free energy of solvation -29.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.26 seconds