Wall clock time and date at job start Tue Mar 31 2020 20:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 113.99621 * 2 1 4 4 H 1.08997 * 109.46921 * 329.99807 * 3 2 1 5 5 C 1.53001 * 109.47058 * 90.00051 * 3 2 1 6 6 C 1.52999 * 109.47138 * 59.99740 * 5 3 2 7 7 O 1.45202 * 109.46994 * 179.97438 * 6 5 3 8 8 C 1.34706 * 116.99756 * 150.00089 * 7 6 5 9 9 O 1.21461 * 120.00315 * 359.97438 * 8 7 6 10 10 C 1.47776 * 119.99590 * 179.72663 * 8 7 6 11 11 C 1.39966 * 120.03327 * 0.27099 * 10 8 7 12 12 C 1.38312 * 120.35468 * 179.97438 * 11 10 8 13 13 C 1.37765 * 120.41712 * 0.02562 * 12 11 10 14 14 C 1.40752 * 120.05112 * 359.97438 * 13 12 11 15 15 C 1.41431 * 120.17389 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00305 * 24.35700 * 15 14 13 17 17 C 1.39939 * 119.99966 * 204.35992 * 15 14 13 18 18 N 1.30821 * 120.00059 * 17.74046 * 17 15 14 19 19 Si 1.86797 * 120.00225 * 197.73759 * 17 15 14 20 20 H 1.48499 * 109.47139 * 89.99829 * 19 17 15 21 21 H 1.48500 * 109.47601 * 210.00203 * 19 17 15 22 22 H 1.48497 * 109.47210 * 330.00310 * 19 17 15 23 23 C 1.39050 * 120.02710 * 179.97438 * 10 8 7 24 24 C 1.52998 * 109.47044 * 60.00079 * 6 5 3 25 25 C 1.52999 * 109.47014 * 299.99398 * 24 6 5 26 26 H 1.08993 * 109.47702 * 300.00370 * 25 24 6 27 27 O 1.42909 * 109.47068 * 179.97438 * 25 24 6 28 28 C 1.42900 * 113.99394 * 90.00456 * 27 25 24 29 29 C 1.53000 * 109.46682 * 209.99969 * 3 2 1 30 30 H 1.08995 * 109.47222 * 300.00057 * 1 2 3 31 31 H 1.09004 * 109.46920 * 60.00096 * 1 2 3 32 32 H 1.09002 * 109.46951 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47242 * 299.99607 * 5 3 2 34 34 H 1.08996 * 109.46723 * 179.97438 * 5 3 2 35 35 H 1.08996 * 109.47364 * 299.99669 * 6 5 3 36 36 H 1.08005 * 119.82159 * 359.97438 * 11 10 8 37 37 H 1.07999 * 119.79058 * 180.02562 * 12 11 10 38 38 H 1.08003 * 119.96994 * 180.02562 * 13 12 11 39 39 H 0.97002 * 120.00633 * 180.02562 * 18 17 15 40 40 H 1.07998 * 120.20896 * 359.97438 * 23 10 8 41 41 H 1.08997 * 109.47595 * 60.00349 * 24 6 5 42 42 H 1.09008 * 109.46831 * 179.97438 * 24 6 5 43 43 H 1.09004 * 109.46722 * 180.02562 * 28 27 25 44 44 H 1.09002 * 109.47498 * 299.99746 * 28 27 25 45 45 H 1.08998 * 109.47362 * 60.00375 * 28 27 25 46 46 H 1.08990 * 109.47672 * 60.00071 * 29 3 2 47 47 H 1.09005 * 109.46956 * 180.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 -0.5139 5 6 2.2176 1.7714 1.4425 6 6 3.1514 0.7975 2.1638 7 8 3.3487 1.2400 3.5326 8 6 3.5813 0.2870 4.4558 9 8 3.6179 -0.8815 4.1266 10 6 3.7975 0.6639 5.8682 11 6 3.7550 2.0102 6.2485 12 6 3.9558 2.3704 7.5687 13 6 4.2005 1.4088 8.5245 14 6 4.2470 0.0498 8.1613 15 6 4.4974 -0.9396 9.1405 16 1 4.2693 -0.7428 10.1777 17 6 5.0407 -2.1734 8.7655 18 7 5.6340 -2.3019 7.6067 19 14 4.9189 -3.6371 9.9197 20 1 3.6664 -4.3846 9.6408 21 1 6.0859 -4.5312 9.7103 22 1 4.9074 -3.1593 11.3256 23 6 4.0371 -0.3193 6.8219 24 6 4.5000 0.7553 1.4425 25 6 4.2926 0.2893 0.0001 26 1 3.8493 -0.7064 0.0000 27 8 5.5523 0.2505 -0.6738 28 6 6.2279 -1.0045 -0.5710 29 6 3.3588 1.2633 -0.7213 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.2568 1.8015 1.9563 34 1 2.6613 2.7670 1.4424 35 1 2.7081 -0.1983 2.1638 36 1 3.5643 2.7720 5.5069 37 1 3.9207 3.4119 7.8520 38 1 4.3559 1.6981 9.5534 39 1 6.0103 -3.1572 7.3465 40 1 4.0657 -1.3599 6.5342 41 1 4.9434 1.7510 1.4426 42 1 5.1655 0.0617 1.9567 43 1 7.1751 -0.9522 -1.1078 44 1 6.4174 -1.2303 0.4784 45 1 5.6068 -1.7881 -1.0049 46 1 3.2111 0.9314 -1.7488 47 1 3.8024 2.2590 -0.7209 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183542244.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:56 Heat of formation + Delta-G solvation = -188.078701 kcal Electronic energy + Delta-G solvation = -29243.159523 eV Core-core repulsion = 25161.683245 eV Total energy + Delta-G solvation = -4081.476279 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.79654 -40.50927 -39.17140 -38.70901 -37.58338 -35.73430 -35.51344 -32.33966 -31.41171 -30.96352 -30.84749 -27.66055 -27.33677 -27.19207 -25.47800 -23.51561 -23.23505 -22.84288 -21.49591 -21.00581 -19.68250 -18.57758 -17.97464 -17.44067 -17.31676 -17.09720 -16.64876 -16.58009 -16.42324 -16.14812 -16.07553 -15.81672 -15.23584 -15.21025 -14.90616 -14.43363 -14.34358 -14.09778 -13.77043 -13.57088 -13.51003 -13.29443 -13.02236 -12.86104 -12.80987 -12.60346 -12.47823 -12.37332 -12.24027 -12.14493 -12.04192 -12.02538 -11.58100 -11.53938 -11.37794 -11.21799 -11.12364 -10.69848 -10.58119 -9.64276 -9.47065 -8.70945 -6.42350 0.10692 0.94425 1.35911 1.44817 1.50510 1.61887 1.78221 2.17240 2.63432 2.70197 2.80028 3.50209 3.60718 3.65840 3.71149 3.80381 3.92947 4.12685 4.17887 4.21944 4.28214 4.37229 4.40907 4.42806 4.45315 4.53361 4.57881 4.60903 4.68765 4.75315 4.75550 4.83933 4.87080 4.92216 5.02413 5.03209 5.07487 5.10904 5.12358 5.25559 5.37338 5.43650 5.79953 5.87123 5.98773 6.10980 6.20661 6.23354 6.50732 6.79107 6.84479 6.86976 8.26582 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013430 B = 0.002962 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.340006 B = 9452.263293 C =10062.777682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.409 6.409 3 C 0.099 3.901 4 H 0.115 0.885 5 C -0.134 4.134 6 C 0.092 3.908 7 O -0.344 6.344 8 C 0.513 3.487 9 O -0.547 6.547 10 C -0.130 4.130 11 C -0.181 4.181 12 C -0.098 4.098 13 C -0.204 4.204 14 C 0.067 3.933 15 C -0.494 4.494 16 H 0.089 0.911 17 C 0.030 3.970 18 N -0.827 5.827 19 Si 0.985 3.015 20 H -0.266 1.266 21 H -0.270 1.270 22 H -0.249 1.249 23 C -0.124 4.124 24 C -0.152 4.152 25 C 0.102 3.898 26 H 0.058 0.942 27 O -0.394 6.394 28 C 0.025 3.975 29 C -0.108 4.108 30 H 0.043 0.957 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.106 0.894 35 H 0.064 0.936 36 H 0.133 0.867 37 H 0.143 0.857 38 H 0.117 0.883 39 H 0.287 0.713 40 H 0.103 0.897 41 H 0.088 0.912 42 H 0.037 0.963 43 H 0.107 0.893 44 H 0.026 0.974 45 H 0.051 0.949 46 H 0.092 0.908 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.616 7.175 -16.678 19.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.328 6.328 3 C 0.041 3.959 4 H 0.132 0.868 5 C -0.171 4.171 6 C 0.037 3.963 7 O -0.261 6.261 8 C 0.361 3.639 9 O -0.439 6.439 10 C -0.131 4.131 11 C -0.200 4.200 12 C -0.115 4.115 13 C -0.223 4.223 14 C 0.064 3.936 15 C -0.523 4.523 16 H 0.107 0.893 17 C -0.185 4.185 18 N -0.453 5.453 19 Si 0.805 3.195 20 H -0.191 1.191 21 H -0.195 1.195 22 H -0.172 1.172 23 C -0.144 4.144 24 C -0.190 4.190 25 C 0.044 3.956 26 H 0.076 0.924 27 O -0.313 6.313 28 C -0.071 4.071 29 C -0.145 4.145 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.125 0.875 35 H 0.082 0.918 36 H 0.151 0.849 37 H 0.160 0.840 38 H 0.135 0.865 39 H 0.098 0.902 40 H 0.121 0.879 41 H 0.106 0.894 42 H 0.056 0.944 43 H 0.126 0.874 44 H 0.045 0.955 45 H 0.070 0.930 46 H 0.111 0.889 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.287 6.675 -17.065 19.373 hybrid contribution 0.128 -1.426 0.803 1.641 sum -6.159 5.249 -16.262 18.164 Atomic orbital electron populations 1.22975 0.79671 1.03510 1.01117 1.87946 1.21372 1.28496 1.95030 1.22190 0.95050 0.85520 0.93119 0.86769 1.22231 0.99246 0.99556 0.96085 1.22665 0.96464 1.00059 0.77090 1.86602 1.81576 1.38771 1.19108 1.21761 0.71567 0.83251 0.87306 1.90726 1.49482 1.21383 1.82335 1.19115 1.09547 0.96222 0.88222 1.20955 1.08735 0.93260 0.97077 1.20970 0.98891 0.99403 0.92275 1.21519 1.08935 0.92273 0.99599 1.17897 0.90178 0.93397 0.92083 1.19883 1.38178 0.98442 0.95788 0.89308 1.26881 0.91505 1.02903 0.97219 1.69877 1.25628 1.27304 1.22494 0.85161 0.78732 0.76451 0.79170 1.19081 1.19488 1.17171 1.21459 1.01593 0.97891 0.93462 1.22402 0.96542 1.03033 0.97032 1.21907 0.84479 0.99926 0.89316 0.92427 1.87835 1.33779 1.35289 1.74363 1.22943 0.98239 0.85368 1.00572 1.21772 0.92135 1.00766 0.99862 0.93842 0.91527 0.89564 0.90181 0.87533 0.91762 0.84935 0.83954 0.86528 0.90216 0.87874 0.89380 0.94447 0.87432 0.95496 0.93001 0.88942 0.87750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.82 113.37 1.23 1.58 16 2 O -0.41 -8.82 9.00 -148.98 -1.34 -10.16 16 3 C 0.10 1.69 2.92 30.59 0.09 1.78 16 4 H 0.11 1.17 7.79 -2.39 -0.02 1.15 16 5 C -0.13 -2.86 5.29 30.59 0.16 -2.70 16 6 C 0.09 2.94 2.31 30.59 0.07 3.01 16 7 O -0.34 -13.30 9.12 -56.15 -0.51 -13.81 16 8 C 0.51 24.44 7.87 70.34 0.55 24.99 16 9 O -0.55 -29.06 15.59 19.96 0.31 -28.74 16 10 C -0.13 -6.49 5.87 -20.14 -0.12 -6.61 16 11 C -0.18 -7.74 9.62 22.71 0.22 -7.52 16 12 C -0.10 -3.97 10.01 22.18 0.22 -3.75 16 13 C -0.20 -9.47 9.78 22.77 0.22 -9.25 16 14 C 0.07 3.61 5.57 -21.32 -0.12 3.50 16 15 C -0.49 -26.56 9.05 23.47 0.21 -26.34 16 16 H 0.09 4.47 7.91 -2.91 -0.02 4.44 16 17 C 0.03 1.55 5.14 85.26 0.44 1.98 16 18 N -0.83 -45.98 10.96 21.82 0.24 -45.74 16 19 Si 0.98 39.20 29.59 68.60 2.03 41.23 16 20 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 21 H -0.27 -10.33 7.11 99.48 0.71 -9.63 16 22 H -0.25 -9.28 7.11 99.48 0.71 -8.57 16 23 C -0.12 -6.98 8.24 23.02 0.19 -6.79 16 24 C -0.15 -4.63 5.17 30.59 0.16 -4.48 16 25 C 0.10 2.58 2.47 30.60 0.08 2.65 16 26 H 0.06 1.62 7.33 -2.39 -0.02 1.60 16 27 O -0.39 -10.12 10.35 -148.98 -1.54 -11.66 16 28 C 0.02 0.56 10.82 113.37 1.23 1.79 16 29 C -0.11 -1.92 5.31 30.60 0.16 -1.76 16 30 H 0.04 0.65 7.87 -2.39 -0.02 0.64 16 31 H 0.07 0.68 8.09 -2.39 -0.02 0.66 16 32 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.08 1.67 7.87 -2.39 -0.02 1.65 16 34 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.06 2.40 6.70 -2.39 -0.02 2.39 16 36 H 0.13 4.85 7.59 -2.91 -0.02 4.83 16 37 H 0.14 4.51 8.06 -2.91 -0.02 4.48 16 38 H 0.12 4.90 8.06 -2.91 -0.02 4.87 16 39 H 0.29 14.70 8.30 -92.71 -0.77 13.93 16 40 H 0.10 6.37 5.75 -2.91 -0.02 6.35 16 41 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.04 1.38 7.87 -2.38 -0.02 1.36 16 43 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.03 0.69 7.87 -2.39 -0.02 0.67 16 45 H 0.05 1.05 8.09 -2.39 -0.02 1.03 16 46 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 Total: -1.00 -69.42 386.17 5.14 -64.29 By element: Atomic # 1 Polarization: 31.55 SS G_CDS: 0.96 Total: 32.51 kcal Atomic # 6 Polarization: -32.91 SS G_CDS: 4.99 Total: -27.92 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: 0.24 Total: -45.74 kcal Atomic # 8 Polarization: -61.29 SS G_CDS: -3.08 Total: -64.37 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Total: -69.42 5.14 -64.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183542244.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.793 kcal (2) G-P(sol) polarization free energy of solvation -69.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds