Wall clock time and date at job start Wed Apr 1 2020 00:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86799 * 119.99915 * 2 1 4 4 H 1.48500 * 109.47048 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47375 * 300.00192 * 3 2 1 6 6 H 1.48506 * 109.46808 * 60.00401 * 3 2 1 7 7 C 1.38653 * 119.99726 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99765 * 179.97438 * 7 2 1 9 9 O 1.34831 * 120.00325 * 359.97438 * 7 2 1 10 10 C 1.35753 * 116.99766 * 185.05796 * 9 7 2 11 11 C 1.38880 * 120.06310 * 174.19245 * 10 9 7 12 12 C 1.38102 * 119.92416 * 179.67985 * 11 10 9 13 13 C 1.38297 * 120.07373 * 0.61457 * 12 11 10 14 14 C 1.50701 * 119.93680 * 179.70111 * 13 12 11 15 15 N 1.46499 * 109.47097 * 269.98199 * 14 13 12 16 16 C 1.34775 * 119.99875 * 179.97438 * 15 14 13 17 17 O 1.21592 * 119.99867 * 359.97438 * 16 15 14 18 18 N 1.34769 * 120.00150 * 180.02562 * 16 15 14 19 19 C 1.46510 * 120.00401 * 180.02562 * 18 16 15 20 20 H 1.08999 * 109.53475 * 325.16218 * 19 18 16 21 21 C 1.54201 * 109.53911 * 204.99980 * 19 18 16 22 22 C 1.46287 * 111.98566 * 162.60035 * 21 19 18 23 23 C 1.54115 * 112.20002 * 61.41422 * 22 21 19 24 24 O 1.40318 * 108.70744 * 280.43841 * 23 22 21 25 25 C 1.43985 * 116.58257 * 95.04095 * 24 23 22 26 26 C 1.50625 * 109.53816 * 85.40540 * 19 18 16 27 27 C 1.38302 * 120.13626 * 359.68336 * 13 12 11 28 28 C 1.38105 * 120.06653 * 359.97438 * 27 13 12 29 29 H 0.97003 * 120.00171 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.03810 * 359.97438 * 11 10 9 31 31 H 1.08008 * 119.96108 * 180.31874 * 12 11 10 32 32 H 1.09006 * 109.46913 * 29.97700 * 14 13 12 33 33 H 1.08997 * 109.47413 * 149.97353 * 14 13 12 34 34 H 0.97000 * 120.00370 * 359.97438 * 15 14 13 35 35 H 0.97000 * 120.00095 * 359.97438 * 18 16 15 36 36 H 1.08995 * 108.97714 * 283.24501 * 21 19 18 37 37 H 1.09001 * 108.98171 * 42.03547 * 21 19 18 38 38 H 1.08998 * 108.93302 * 182.11196 * 22 21 19 39 39 H 1.08991 * 108.93985 * 300.71354 * 22 21 19 40 40 H 1.09001 * 109.60155 * 40.20508 * 23 22 21 41 41 H 1.09005 * 109.59842 * 160.51200 * 23 22 21 42 42 H 1.09003 * 108.69637 * 78.91375 * 25 24 23 43 43 H 1.08999 * 108.69483 * 196.88398 * 25 24 23 44 44 H 1.08998 * 108.88443 * 330.97965 * 26 19 18 45 45 H 1.09007 * 108.87811 * 89.43870 * 26 19 18 46 46 H 1.08001 * 119.96717 * 180.02562 * 27 13 12 47 47 H 1.07996 * 120.03107 * 180.02562 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 0.0006 5 1 1.8908 2.3965 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0700 -3.5046 0.1056 11 6 1.4366 -4.7339 0.2335 12 6 2.1874 -5.8886 0.3346 13 6 3.5687 -5.8205 0.3213 14 6 4.3850 -7.0818 0.4386 15 7 4.6566 -7.3581 1.8514 16 6 5.3752 -8.4438 2.1997 17 8 5.7977 -9.1942 1.3412 18 7 5.6246 -8.6983 3.4994 19 6 6.4063 -9.8782 3.8780 20 1 6.1870 -10.6962 3.1918 21 6 6.0409 -10.2993 5.3157 22 6 6.4600 -11.6700 5.6081 23 6 7.9869 -11.8480 5.4988 24 8 8.3293 -11.9759 4.1441 25 6 8.7377 -10.7730 3.4663 26 6 7.8750 -9.5495 3.8196 27 6 4.2024 -4.5972 0.2002 28 6 3.4571 -3.4396 0.0917 29 1 -0.4850 0.8401 0.0004 30 1 0.3580 -4.7873 0.2491 31 1 1.6954 -6.8454 0.4289 32 1 3.8310 -7.9147 0.0054 33 1 5.3272 -6.9557 -0.0947 34 1 4.3192 -6.7597 2.5362 35 1 5.2873 -8.0999 4.1842 36 1 6.5277 -9.6224 6.0178 37 1 4.9610 -10.2252 5.4432 38 1 6.1453 -11.9279 6.6194 39 1 5.9739 -12.3462 4.9050 40 1 8.4878 -10.9772 5.9218 41 1 8.2904 -12.7435 6.0412 42 1 9.7733 -10.5580 3.7297 43 1 8.6812 -10.9415 2.3909 44 1 8.0340 -8.7767 3.0675 45 1 8.1892 -9.1646 4.7899 46 1 5.2812 -4.5472 0.1898 47 1 3.9526 -2.4847 -0.0032 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183553498.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:53 Heat of formation + Delta-G solvation = -84.186243 kcal Electronic energy + Delta-G solvation = -27714.606788 eV Core-core repulsion = 23669.928375 eV Total energy + Delta-G solvation = -4044.678413 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.50011 -39.41107 -38.98464 -36.97180 -35.97708 -34.33058 -33.58759 -32.41812 -31.84877 -30.29562 -29.69109 -27.04650 -26.08525 -25.48253 -24.41047 -22.06898 -21.53691 -21.14391 -20.62777 -20.57008 -18.40296 -18.07606 -17.24842 -17.16647 -16.96747 -15.96195 -15.48522 -15.33217 -14.86572 -14.66755 -14.56186 -14.38775 -14.31791 -13.91175 -13.77487 -13.68664 -13.40122 -13.35519 -12.98223 -12.80358 -12.59512 -12.09635 -11.97421 -11.70784 -11.64557 -11.41530 -11.20541 -11.05744 -10.98429 -10.81890 -10.79091 -10.69430 -10.49611 -10.17234 -9.86791 -9.44265 -9.30723 -8.93612 -8.78308 -8.30112 -7.34890 -6.54950 -4.13820 2.00817 2.11387 2.79498 3.06693 3.07924 3.13501 3.22788 3.50721 3.88492 4.18233 4.21703 4.37496 4.53596 4.57300 4.68812 4.77768 4.95726 5.00002 5.08239 5.12260 5.14671 5.21291 5.25541 5.36161 5.43567 5.53419 5.56949 5.65583 5.70541 5.75990 5.79626 5.80952 5.88714 5.97280 6.10638 6.33915 6.40038 6.56571 6.60448 6.78693 6.88405 6.98335 7.04591 7.14416 7.26289 7.33550 7.69868 7.89882 8.04020 8.62613 8.90522 9.58781 10.62637 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024647 B = 0.001779 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.776097 B =15734.294235 C =15977.699731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.393 4.393 8 H 0.094 0.906 9 O -0.174 6.174 10 C 0.161 3.839 11 C -0.196 4.196 12 C -0.054 4.054 13 C -0.214 4.214 14 C 0.198 3.802 15 N -0.738 5.738 16 C 0.701 3.299 17 O -0.595 6.595 18 N -0.748 5.748 19 C 0.168 3.832 20 H 0.095 0.905 21 C -0.126 4.126 22 C -0.149 4.149 23 C 0.065 3.935 24 O -0.384 6.384 25 C 0.068 3.932 26 C -0.165 4.165 27 C -0.050 4.050 28 C -0.237 4.237 29 H 0.271 0.729 30 H 0.118 0.882 31 H 0.113 0.887 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.397 0.603 35 H 0.395 0.605 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.052 0.948 41 H 0.084 0.916 42 H 0.051 0.949 43 H 0.092 0.908 44 H 0.082 0.918 45 H 0.064 0.936 46 H 0.108 0.892 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.808 -17.981 11.935 25.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.469 4.469 8 H 0.111 0.889 9 O -0.076 6.076 10 C 0.106 3.894 11 C -0.215 4.215 12 C -0.073 4.073 13 C -0.215 4.215 14 C 0.075 3.925 15 N -0.393 5.393 16 C 0.401 3.599 17 O -0.473 6.473 18 N -0.403 5.403 19 C 0.063 3.937 20 H 0.113 0.887 21 C -0.164 4.164 22 C -0.187 4.187 23 C -0.013 4.013 24 O -0.303 6.303 25 C -0.009 4.009 26 C -0.204 4.204 27 C -0.069 4.069 28 C -0.257 4.257 29 H 0.081 0.919 30 H 0.136 0.864 31 H 0.131 0.869 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.231 0.769 35 H 0.228 0.772 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.070 0.930 41 H 0.102 0.898 42 H 0.069 0.931 43 H 0.111 0.889 44 H 0.101 0.899 45 H 0.082 0.918 46 H 0.126 0.874 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 13.741 -18.605 10.980 25.603 hybrid contribution 0.121 1.889 0.821 2.063 sum 13.862 -16.717 11.801 24.716 Atomic orbital electron populations 1.70045 1.06003 1.27764 1.45524 1.25324 0.95869 0.98946 0.96374 0.85627 0.79142 0.80210 0.78341 1.19048 1.20048 1.20077 1.21405 0.91891 0.80712 1.52905 0.88868 1.83980 1.34514 1.11569 1.77573 1.19439 0.90317 0.88056 0.91609 1.20224 0.99683 0.90269 1.11316 1.20542 0.92789 0.96818 0.97104 1.19226 0.93556 0.93645 1.15094 1.19823 0.98236 0.94571 0.79850 1.45528 1.57417 1.26737 1.09626 1.16036 0.79270 0.81893 0.82741 1.90913 1.57622 1.49777 1.49009 1.45265 1.59393 1.29411 1.06221 1.20447 0.89308 0.87850 0.96143 0.88701 1.20878 1.02280 0.97719 0.95504 1.21064 0.97718 0.97221 1.02724 1.22360 0.93822 1.01580 0.83518 1.87488 1.87121 1.32216 1.23477 1.22889 0.96136 0.84047 0.97792 1.22406 0.95887 0.99243 1.02840 1.20648 0.98373 0.91622 0.96265 1.21161 0.93778 0.98961 1.11764 0.91923 0.86381 0.86945 0.91738 0.91810 0.76934 0.77194 0.91652 0.90971 0.90750 0.90673 0.92992 0.89775 0.93054 0.88934 0.89916 0.91775 0.87413 0.85433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.54 13.67 55.48 0.76 -23.78 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 3 Si 0.94 19.91 29.55 -169.99 -5.02 14.88 16 4 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.39 -10.62 9.49 30.89 0.29 -10.33 16 8 H 0.09 2.32 5.20 -52.48 -0.27 2.05 16 9 O -0.17 -4.79 9.76 0.04 0.00 -4.79 16 10 C 0.16 3.69 6.65 -39.11 -0.26 3.43 16 11 C -0.20 -3.90 9.99 -39.39 -0.39 -4.30 16 12 C -0.05 -0.89 9.69 -39.61 -0.38 -1.28 16 13 C -0.21 -3.38 5.25 -104.58 -0.55 -3.93 16 14 C 0.20 2.78 5.80 -5.19 -0.03 2.75 16 15 N -0.74 -9.14 5.55 -66.42 -0.37 -9.51 16 16 C 0.70 9.25 8.38 -86.93 -0.73 8.53 16 17 O -0.59 -10.15 16.00 5.28 0.08 -10.06 16 18 N -0.75 -7.15 5.00 -59.22 -0.30 -7.44 16 19 C 0.17 1.52 2.15 -68.49 -0.15 1.37 16 20 H 0.09 1.13 7.26 -51.93 -0.38 0.75 16 21 C -0.13 -0.81 4.83 -29.30 -0.14 -0.95 16 22 C -0.15 -0.92 5.47 -29.34 -0.16 -1.08 16 23 C 0.06 0.42 6.38 37.74 0.24 0.66 16 24 O -0.38 -3.59 10.17 -33.68 -0.34 -3.93 16 25 C 0.07 0.58 6.67 37.58 0.25 0.83 16 26 C -0.16 -1.38 5.01 -27.49 -0.14 -1.52 16 27 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 28 C -0.24 -4.87 9.17 -39.40 -0.36 -5.23 16 29 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 31 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 32 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 33 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 34 H 0.40 4.29 8.48 -40.82 -0.35 3.94 16 35 H 0.39 2.80 8.62 -40.82 -0.35 2.45 16 36 H 0.06 0.35 7.60 -51.93 -0.39 -0.05 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 40 H 0.05 0.29 6.98 -51.93 -0.36 -0.07 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.08 0.83 7.82 -51.93 -0.41 0.42 16 45 H 0.06 0.44 6.84 -51.93 -0.35 0.08 16 46 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 47 H 0.13 2.64 5.64 -52.49 -0.30 2.35 16 LS Contribution 383.06 15.07 5.77 5.77 Total: -1.00 -32.05 383.06 -9.34 -41.39 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -6.94 Total: 8.78 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -2.99 Total: -11.32 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 0.09 Total: -40.73 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.26 Total: -18.78 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.05 -9.34 -41.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183553498.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.795 kcal (2) G-P(sol) polarization free energy of solvation -32.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds