Wall clock time and date at job start Wed Apr 1 2020 00:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86799 * 119.99915 * 2 1 4 4 H 1.48500 * 109.47048 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47375 * 300.00192 * 3 2 1 6 6 H 1.48506 * 109.46808 * 60.00401 * 3 2 1 7 7 C 1.38653 * 119.99726 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99765 * 179.97438 * 7 2 1 9 9 O 1.34831 * 120.00325 * 359.97438 * 7 2 1 10 10 C 1.35753 * 116.99766 * 185.05796 * 9 7 2 11 11 C 1.38880 * 120.06310 * 174.19245 * 10 9 7 12 12 C 1.38102 * 119.92416 * 179.67985 * 11 10 9 13 13 C 1.38297 * 120.07373 * 0.61457 * 12 11 10 14 14 C 1.50701 * 119.93680 * 179.70111 * 13 12 11 15 15 N 1.46499 * 109.47097 * 269.98199 * 14 13 12 16 16 C 1.34775 * 119.99875 * 179.97438 * 15 14 13 17 17 O 1.21592 * 119.99867 * 359.97438 * 16 15 14 18 18 N 1.34769 * 120.00150 * 180.02562 * 16 15 14 19 19 C 1.46510 * 120.00401 * 180.02562 * 18 16 15 20 20 H 1.08999 * 109.53475 * 325.16218 * 19 18 16 21 21 C 1.54201 * 109.53911 * 204.99980 * 19 18 16 22 22 C 1.46287 * 111.98566 * 162.60035 * 21 19 18 23 23 C 1.54115 * 112.20002 * 61.41422 * 22 21 19 24 24 O 1.40318 * 108.70744 * 280.43841 * 23 22 21 25 25 C 1.43985 * 116.58257 * 95.04095 * 24 23 22 26 26 C 1.50625 * 109.53816 * 85.40540 * 19 18 16 27 27 C 1.38302 * 120.13626 * 359.68336 * 13 12 11 28 28 C 1.38105 * 120.06653 * 359.97438 * 27 13 12 29 29 H 0.97003 * 120.00171 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.03810 * 359.97438 * 11 10 9 31 31 H 1.08008 * 119.96108 * 180.31874 * 12 11 10 32 32 H 1.09006 * 109.46913 * 29.97700 * 14 13 12 33 33 H 1.08997 * 109.47413 * 149.97353 * 14 13 12 34 34 H 0.97000 * 120.00370 * 359.97438 * 15 14 13 35 35 H 0.97000 * 120.00095 * 359.97438 * 18 16 15 36 36 H 1.08995 * 108.97714 * 283.24501 * 21 19 18 37 37 H 1.09001 * 108.98171 * 42.03547 * 21 19 18 38 38 H 1.08998 * 108.93302 * 182.11196 * 22 21 19 39 39 H 1.08991 * 108.93985 * 300.71354 * 22 21 19 40 40 H 1.09001 * 109.60155 * 40.20508 * 23 22 21 41 41 H 1.09005 * 109.59842 * 160.51200 * 23 22 21 42 42 H 1.09003 * 108.69637 * 78.91375 * 25 24 23 43 43 H 1.08999 * 108.69483 * 196.88398 * 25 24 23 44 44 H 1.08998 * 108.88443 * 330.97965 * 26 19 18 45 45 H 1.09007 * 108.87811 * 89.43870 * 26 19 18 46 46 H 1.08001 * 119.96717 * 180.02562 * 27 13 12 47 47 H 1.07996 * 120.03107 * 180.02562 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 0.0006 5 1 1.8908 2.3965 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0700 -3.5046 0.1056 11 6 1.4366 -4.7339 0.2335 12 6 2.1874 -5.8886 0.3346 13 6 3.5687 -5.8205 0.3213 14 6 4.3850 -7.0818 0.4386 15 7 4.6566 -7.3581 1.8514 16 6 5.3752 -8.4438 2.1997 17 8 5.7977 -9.1942 1.3412 18 7 5.6246 -8.6983 3.4994 19 6 6.4063 -9.8782 3.8780 20 1 6.1870 -10.6962 3.1918 21 6 6.0409 -10.2993 5.3157 22 6 6.4600 -11.6700 5.6081 23 6 7.9869 -11.8480 5.4988 24 8 8.3293 -11.9759 4.1441 25 6 8.7377 -10.7730 3.4663 26 6 7.8750 -9.5495 3.8196 27 6 4.2024 -4.5972 0.2002 28 6 3.4571 -3.4396 0.0917 29 1 -0.4850 0.8401 0.0004 30 1 0.3580 -4.7873 0.2491 31 1 1.6954 -6.8454 0.4289 32 1 3.8310 -7.9147 0.0054 33 1 5.3272 -6.9557 -0.0947 34 1 4.3192 -6.7597 2.5362 35 1 5.2873 -8.0999 4.1842 36 1 6.5277 -9.6224 6.0178 37 1 4.9610 -10.2252 5.4432 38 1 6.1453 -11.9279 6.6194 39 1 5.9739 -12.3462 4.9050 40 1 8.4878 -10.9772 5.9218 41 1 8.2904 -12.7435 6.0412 42 1 9.7733 -10.5580 3.7297 43 1 8.6812 -10.9415 2.3909 44 1 8.0340 -8.7767 3.0675 45 1 8.1892 -9.1646 4.7899 46 1 5.2812 -4.5472 0.1898 47 1 3.9526 -2.4847 -0.0032 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183553498.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:51 Heat of formation + Delta-G solvation = -106.575514 kcal Electronic energy + Delta-G solvation = -27715.577660 eV Core-core repulsion = 23669.928375 eV Total energy + Delta-G solvation = -4045.649284 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -41.40274 -40.81021 -40.01834 -38.53707 -36.80843 -35.57481 -34.33768 -34.18213 -32.70762 -31.83396 -31.04878 -27.87312 -27.46354 -26.58910 -25.61304 -23.64654 -22.39472 -22.10522 -21.78214 -21.38526 -19.89082 -19.39432 -18.81124 -17.92728 -17.79152 -16.80501 -16.64220 -16.38546 -16.15437 -16.05889 -15.97245 -15.54617 -15.32642 -15.16761 -14.97245 -14.82479 -14.39531 -14.36521 -14.22338 -13.94862 -13.72775 -13.49866 -13.18088 -13.03975 -12.62528 -12.57045 -12.35783 -12.23300 -12.19495 -12.09504 -11.79117 -11.64320 -11.38881 -11.32715 -11.20157 -10.81786 -10.50481 -10.27989 -9.82388 -9.72864 -9.02193 -8.48744 -6.16910 0.52520 0.57548 1.35833 1.42715 1.53661 1.81277 2.16663 2.18685 2.79419 2.92367 3.12976 3.44264 3.48279 3.58609 3.84966 3.88439 3.98711 4.03434 4.08831 4.17425 4.20319 4.31948 4.46959 4.55705 4.56882 4.60445 4.62979 4.74771 4.80434 4.81040 4.92423 5.04190 5.07500 5.09879 5.14456 5.16531 5.25245 5.26538 5.36661 5.48831 5.53362 5.60286 5.68863 5.75669 6.01284 6.05144 6.16219 6.48187 6.96220 7.12916 7.62073 7.75533 8.74254 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024647 B = 0.001779 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.776097 B =15734.294235 C =15977.699731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.022 4.022 3 Si 1.018 2.982 4 H -0.251 1.251 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.413 4.413 8 H 0.104 0.896 9 O -0.229 6.229 10 C 0.123 3.877 11 C -0.204 4.204 12 C -0.043 4.043 13 C -0.180 4.180 14 C 0.204 3.796 15 N -0.731 5.731 16 C 0.699 3.301 17 O -0.635 6.635 18 N -0.731 5.731 19 C 0.166 3.834 20 H 0.061 0.939 21 C -0.119 4.119 22 C -0.147 4.147 23 C 0.057 3.943 24 O -0.406 6.406 25 C 0.068 3.932 26 C -0.159 4.159 27 C -0.044 4.044 28 C -0.243 4.243 29 H 0.273 0.727 30 H 0.115 0.885 31 H 0.146 0.854 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.407 0.593 35 H 0.410 0.590 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.096 0.904 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.096 0.904 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.065 0.935 45 H 0.087 0.913 46 H 0.139 0.861 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.186 -19.237 13.874 28.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.174 1.174 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.489 4.489 8 H 0.121 0.879 9 O -0.136 6.136 10 C 0.072 3.928 11 C -0.224 4.224 12 C -0.061 4.061 13 C -0.182 4.182 14 C 0.081 3.919 15 N -0.386 5.386 16 C 0.399 3.601 17 O -0.517 6.517 18 N -0.387 5.387 19 C 0.061 3.939 20 H 0.080 0.920 21 C -0.156 4.156 22 C -0.185 4.185 23 C -0.020 4.020 24 O -0.326 6.326 25 C -0.009 4.009 26 C -0.197 4.197 27 C -0.063 4.063 28 C -0.263 4.263 29 H 0.082 0.918 30 H 0.133 0.867 31 H 0.164 0.836 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.243 0.757 35 H 0.246 0.754 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.115 0.885 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.114 0.886 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.083 0.917 45 H 0.105 0.895 46 H 0.156 0.844 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 16.147 -19.905 12.972 28.726 hybrid contribution -0.480 1.850 0.266 1.929 sum 15.667 -18.055 13.238 27.325 Atomic orbital electron populations 1.70185 1.08021 1.28788 1.48668 1.26584 0.96836 1.02760 0.95838 0.84530 0.78309 0.74886 0.78511 1.17377 1.19514 1.19363 1.21872 0.92577 0.81313 1.53090 0.87870 1.83950 1.36072 1.12679 1.80850 1.19988 0.91625 0.87946 0.93257 1.20451 1.00087 0.90412 1.11420 1.20875 0.93083 0.96948 0.95232 1.19481 0.93422 0.94088 1.11162 1.19692 0.97996 0.93276 0.80957 1.45247 1.57393 1.26850 1.09152 1.16141 0.79009 0.81487 0.83436 1.90898 1.59178 1.51104 1.50474 1.45129 1.58657 1.29610 1.05310 1.20514 0.89756 0.86507 0.97137 0.92031 1.20849 1.02799 0.98247 0.93744 1.21060 0.97399 0.96634 1.03457 1.22582 0.94138 1.02927 0.82309 1.87463 1.87386 1.32660 1.25074 1.22858 0.97069 0.84006 0.96921 1.22337 0.95340 0.98647 1.03423 1.20936 0.99790 0.90689 0.94883 1.21241 0.92998 1.00058 1.11970 0.91812 0.86680 0.83596 0.91390 0.91520 0.75700 0.75361 0.89539 0.90544 0.88522 0.92558 0.91522 0.88562 0.91435 0.90828 0.91650 0.89488 0.84350 0.86188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.22 13.67 21.61 0.30 -54.93 16 2 C -0.02 -1.24 5.49 84.83 0.47 -0.78 16 3 Si 1.02 41.69 29.55 68.60 2.03 43.72 16 4 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 5 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 6 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 7 C -0.41 -23.27 9.49 67.92 0.64 -22.62 16 8 H 0.10 5.31 5.20 -2.91 -0.02 5.30 16 9 O -0.23 -13.35 9.76 -22.78 -0.22 -13.57 16 10 C 0.12 5.80 6.65 22.58 0.15 5.95 16 11 C -0.20 -8.15 9.99 22.39 0.22 -7.92 16 12 C -0.04 -1.32 9.69 22.25 0.22 -1.10 16 13 C -0.18 -5.14 5.25 -19.83 -0.10 -5.24 16 14 C 0.20 5.03 5.80 85.63 0.50 5.53 16 15 N -0.73 -15.77 5.55 -482.30 -2.68 -18.45 16 16 C 0.70 16.95 8.38 179.06 1.50 18.45 16 17 O -0.63 -20.94 16.00 -4.01 -0.06 -21.01 16 18 N -0.73 -12.21 5.00 -459.55 -2.30 -14.51 16 19 C 0.17 2.71 2.15 44.63 0.10 2.81 16 20 H 0.06 1.46 7.26 -2.39 -0.02 1.44 16 21 C -0.12 -1.17 4.83 28.93 0.14 -1.03 16 22 C -0.15 -1.47 5.47 28.90 0.16 -1.31 16 23 C 0.06 0.61 6.38 72.36 0.46 1.07 16 24 O -0.41 -7.16 10.17 -143.43 -1.46 -8.62 16 25 C 0.07 1.09 6.67 72.26 0.48 1.57 16 26 C -0.16 -2.36 5.01 30.10 0.15 -2.21 16 27 C -0.04 -1.41 9.69 22.25 0.22 -1.19 16 28 C -0.24 -9.92 9.17 22.39 0.21 -9.71 16 29 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 30 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 31 H 0.15 3.58 8.06 -2.91 -0.02 3.55 16 32 H 0.07 1.71 8.08 -2.38 -0.02 1.69 16 33 H 0.07 1.69 8.08 -2.39 -0.02 1.67 16 34 H 0.41 7.29 8.48 -92.71 -0.79 6.50 16 35 H 0.41 4.43 8.62 -92.71 -0.80 3.63 16 36 H 0.09 0.54 7.60 -2.39 -0.02 0.52 16 37 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.06 0.78 8.13 -2.39 -0.02 0.76 16 40 H 0.07 0.52 6.98 -2.39 -0.02 0.50 16 41 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 42 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.06 1.22 7.82 -2.39 -0.02 1.20 16 45 H 0.09 0.89 6.84 -2.38 -0.02 0.88 16 46 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 47 H 0.12 5.02 5.64 -2.91 -0.02 5.00 16 Total: -1.00 -74.97 383.06 0.52 -74.45 By element: Atomic # 1 Polarization: 31.22 SS G_CDS: -0.58 Total: 30.65 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: 5.50 Total: -17.73 kcal Atomic # 7 Polarization: -83.20 SS G_CDS: -4.68 Total: -87.88 kcal Atomic # 8 Polarization: -41.46 SS G_CDS: -1.75 Total: -43.20 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -74.97 0.52 -74.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183553498.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.125 kcal (2) G-P(sol) polarization free energy of solvation -74.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds