Wall clock time and date at job start Tue Mar 31 2020 19:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47395 * 2 1 4 4 C 1.50696 * 109.46856 * 239.99743 * 2 1 3 5 5 N 1.29029 * 124.91841 * 286.63955 * 4 2 1 6 6 C 1.31779 * 117.12928 * 179.81555 * 5 4 2 7 7 C 1.33640 * 114.49501 * 0.47529 * 6 5 4 8 8 S 1.70978 * 124.91804 * 106.95094 * 4 2 1 9 9 N 1.46903 * 109.46964 * 119.99495 * 2 1 3 10 10 C 1.46956 * 110.99798 * 175.12286 * 9 2 1 11 11 C 1.53045 * 109.36353 * 183.18955 * 10 9 2 12 12 N 1.46954 * 109.36907 * 301.60254 * 11 10 9 13 13 C 1.46896 * 111.00330 * 183.18810 * 12 11 10 14 14 C 1.53002 * 109.47076 * 169.99828 * 13 12 11 15 15 H 1.09000 * 109.47074 * 55.00046 * 14 13 12 16 16 C 1.47198 * 109.47455 * 294.99857 * 14 13 12 17 17 N 7.05698 * 120.53999 * 76.31149 * 2 1 3 18 18 C 1.53005 * 109.47045 * 175.00192 * 14 13 12 19 19 C 1.50703 * 109.46960 * 185.00286 * 18 14 13 20 20 H 1.07994 * 119.99773 * 359.97438 * 19 18 14 21 21 C 1.37877 * 119.99537 * 179.72083 * 19 18 14 22 22 N 1.31506 * 120.00456 * 0.27615 * 21 19 18 23 23 Si 1.86799 * 119.99559 * 180.27231 * 21 19 18 24 24 H 1.48501 * 109.47302 * 90.00316 * 23 21 19 25 25 H 1.48502 * 109.47204 * 210.00260 * 23 21 19 26 26 H 1.48499 * 109.47531 * 330.00032 * 23 21 19 27 27 C 1.46955 * 110.87794 * 59.31654 * 12 11 10 28 28 C 1.46950 * 111.00068 * 298.92650 * 9 2 1 29 29 H 1.09000 * 109.47426 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47126 * 300.00445 * 1 2 3 31 31 H 1.09001 * 109.47008 * 59.99754 * 1 2 3 32 32 H 1.07993 * 122.75178 * 180.23029 * 6 5 4 33 33 H 1.08008 * 126.03591 * 179.71613 * 7 6 5 34 34 H 1.09005 * 109.48969 * 63.22646 * 10 9 2 35 35 H 1.09004 * 109.50954 * 303.16944 * 10 9 2 36 36 H 1.09005 * 109.49002 * 181.63469 * 11 10 9 37 37 H 1.08997 * 109.49215 * 61.57080 * 11 10 9 38 38 H 1.09002 * 109.47207 * 50.00587 * 13 12 11 39 39 H 1.09000 * 109.47269 * 289.99897 * 13 12 11 40 40 H 1.08992 * 109.47251 * 64.99652 * 18 14 13 41 41 H 1.08997 * 109.46682 * 304.99965 * 18 14 13 42 42 H 0.97004 * 120.00520 * 179.97438 * 22 21 19 43 43 H 1.08996 * 109.48757 * 60.65550 * 27 12 11 44 44 H 1.09001 * 109.48767 * 180.71643 * 27 12 11 45 45 H 1.08992 * 109.49177 * 296.77571 * 28 9 2 46 46 H 1.09000 * 109.49271 * 56.84987 * 28 9 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 7 1.9928 -1.9870 -1.4140 6 6 2.4728 -2.4455 -2.5524 7 6 2.9524 -1.5041 -3.3707 8 16 2.7438 0.0576 -2.5821 9 7 2.0197 -0.6924 1.1995 10 6 3.4840 -0.8139 1.1766 11 6 3.9465 -1.6084 2.4002 12 7 3.4965 -0.9273 3.6221 13 6 3.9861 -1.6197 4.8216 14 6 3.7150 -0.7563 6.0553 15 1 2.6546 -0.5082 6.0992 16 6 4.5058 0.4824 5.9707 17 7 5.1160 1.4383 5.9054 18 6 4.1107 -1.5288 7.3153 19 6 3.7306 -0.7292 8.5349 20 1 3.2549 0.2338 8.4224 21 6 3.9855 -1.2294 9.7941 22 7 4.5652 -2.4019 9.9310 23 14 3.5075 -0.2416 11.3058 24 1 2.1254 -0.5996 11.7144 25 1 4.4465 -0.5480 12.4147 26 1 3.5706 1.2081 10.9902 27 6 2.0321 -0.8059 3.6450 28 6 1.5696 -0.0113 2.4214 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 2.4815 -3.4962 -2.8019 33 1 3.3911 -1.6712 -4.3435 34 1 3.9317 0.1798 1.1978 35 1 3.7921 -1.3323 0.2686 36 1 5.0346 -1.6748 2.4006 37 1 3.5207 -2.6111 2.3650 38 1 5.0581 -1.7938 4.7285 39 1 3.4706 -2.5745 4.9259 40 1 5.1871 -1.6997 7.3138 41 1 3.5908 -2.4867 7.3324 42 1 4.7448 -2.7537 10.8170 43 1 1.5845 -1.7995 3.6239 44 1 1.7244 -0.2872 4.5529 45 1 1.9955 0.9914 2.4567 46 1 0.4816 0.0551 2.4210 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184596993.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:45 Heat of formation + Delta-G solvation = 84.379127 kcal Electronic energy + Delta-G solvation = -26157.265514 eV Core-core repulsion = 22594.942267 eV Total energy + Delta-G solvation = -3562.323247 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.35310 -39.23424 -37.13898 -35.47997 -33.67979 -32.46316 -31.28281 -30.92218 -29.60148 -27.40773 -26.05521 -25.26819 -23.58591 -22.69117 -22.08485 -21.60665 -20.21104 -19.41717 -18.35159 -16.86410 -16.63227 -16.29078 -15.84445 -15.16780 -15.02680 -14.92595 -14.74447 -14.53878 -14.40149 -14.22546 -13.71269 -13.62403 -13.07274 -12.86943 -12.54059 -12.37220 -12.31336 -12.08149 -11.89797 -11.85873 -11.69246 -11.47372 -11.25520 -11.18486 -11.06131 -11.02769 -10.80492 -10.60056 -10.48472 -10.10257 -9.82986 -9.71020 -9.51762 -9.23435 -9.20485 -8.53239 -8.44692 -8.14815 -6.08543 -4.11635 0.36889 0.99625 1.40513 2.55887 3.29733 3.36728 3.41343 3.63812 3.74703 3.76378 3.85240 4.01529 4.42196 4.50826 4.74878 4.82394 4.85516 4.91771 4.94570 5.07669 5.16224 5.23225 5.29573 5.31243 5.33933 5.36363 5.45618 5.56462 5.67495 5.70137 5.75990 5.80033 5.90277 5.93275 6.00315 6.03952 6.12071 6.38776 6.51782 6.76623 6.84484 7.19939 7.21879 7.44465 7.49845 7.54463 7.86635 8.24358 8.60772 8.93083 9.53733 11.02352 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.027198 B = 0.002195 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.223126 B =12755.366942 C =12886.498583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.160 3.840 3 H 0.059 0.941 4 C 0.062 3.938 5 N -0.446 5.446 6 C 0.039 3.961 7 C -0.261 4.261 8 S 0.107 5.893 9 N -0.517 5.517 10 C 0.061 3.939 11 C 0.062 3.938 12 N -0.543 5.543 13 C 0.064 3.936 14 C 0.010 3.990 15 H 0.100 0.900 16 C 0.257 3.743 17 N -0.482 5.482 18 C 0.031 3.969 19 C -0.525 4.525 20 H 0.056 0.944 21 C 0.062 3.938 22 N -0.892 5.892 23 Si 0.891 3.109 24 H -0.279 1.279 25 H -0.286 1.286 26 H -0.274 1.274 27 C 0.054 3.946 28 C 0.055 3.945 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.176 0.824 33 H 0.176 0.824 34 H 0.040 0.960 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.045 0.955 38 H 0.079 0.921 39 H 0.055 0.945 40 H 0.026 0.974 41 H 0.037 0.963 42 H 0.262 0.738 43 H 0.047 0.953 44 H 0.088 0.912 45 H 0.043 0.957 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.493 0.611 -27.540 28.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.048 3.952 3 H 0.077 0.923 4 C -0.217 4.217 5 N -0.159 5.159 6 C -0.112 4.112 7 C -0.400 4.400 8 S 0.361 5.639 9 N -0.244 5.244 10 C -0.067 4.067 11 C -0.066 4.066 12 N -0.268 5.268 13 C -0.065 4.065 14 C -0.012 4.012 15 H 0.117 0.883 16 C -0.060 4.060 17 N -0.158 5.158 18 C -0.007 4.007 19 C -0.563 4.563 20 H 0.075 0.925 21 C -0.140 4.140 22 N -0.530 5.530 23 Si 0.719 3.281 24 H -0.205 1.205 25 H -0.212 1.212 26 H -0.199 1.199 27 C -0.074 4.074 28 C -0.072 4.072 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.193 0.807 33 H 0.194 0.806 34 H 0.058 0.942 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.063 0.937 38 H 0.097 0.903 39 H 0.073 0.927 40 H 0.044 0.956 41 H 0.056 0.944 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.106 0.894 45 H 0.062 0.938 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.487 2.623 -27.369 28.249 hybrid contribution -0.284 -0.894 0.577 1.101 sum -6.771 1.730 -26.791 27.688 Atomic orbital electron populations 1.21871 0.91947 1.03847 1.02219 1.20159 0.96489 0.93481 0.85087 0.92292 1.27019 1.01939 0.92532 1.00234 1.66244 1.17602 1.11970 1.20104 1.21946 0.98837 1.01559 0.88894 1.27102 1.11625 0.94590 1.06697 1.84124 1.55778 1.11352 1.12664 1.62161 1.11141 1.50605 1.00449 1.22139 0.86856 0.99450 0.98284 1.22058 0.99939 0.95909 0.88733 1.62204 1.10700 1.51829 1.02111 1.22212 1.01084 0.95281 0.87909 1.19252 0.97784 0.86970 0.97147 0.88255 1.28859 0.92933 0.93846 0.90312 1.80974 1.10912 1.12475 1.11486 1.19172 0.97928 0.95245 0.88381 1.21133 1.40206 1.04280 0.90719 0.92530 1.24951 0.94937 0.94963 0.99134 1.69934 1.42072 1.17664 1.23345 0.86599 0.78362 0.80585 0.82581 1.20474 1.21167 1.19865 1.22219 0.87736 0.99876 0.97614 1.22284 1.00340 0.96065 0.88549 0.90628 0.91065 0.92106 0.80731 0.80635 0.94199 0.90918 0.90460 0.93682 0.90285 0.92672 0.95597 0.94442 0.92805 0.93443 0.89400 0.93847 0.89712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 8.98 37.16 0.33 -0.77 16 2 C 0.16 1.49 2.57 -68.86 -0.18 1.31 16 3 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 4 C 0.06 0.59 4.55 -13.46 -0.06 0.53 16 5 N -0.45 -4.78 10.21 -11.87 -0.12 -4.90 16 6 C 0.04 0.33 11.35 -19.19 -0.22 0.11 16 7 C -0.26 -1.83 11.36 29.12 0.33 -1.50 16 8 S 0.11 0.83 23.18 -107.50 -2.49 -1.67 16 9 N -0.52 -5.64 4.55 -227.88 -1.04 -6.68 16 10 C 0.06 0.70 5.33 -3.77 -0.02 0.68 16 11 C 0.06 0.77 5.61 -3.77 -0.02 0.74 16 12 N -0.54 -7.48 4.41 -234.47 -1.03 -8.52 16 13 C 0.06 0.96 4.32 -3.82 -0.02 0.95 16 14 C 0.01 0.19 2.14 -93.40 -0.20 -0.01 16 15 H 0.10 1.71 6.28 -51.93 -0.33 1.39 16 16 C 0.26 5.40 13.67 -20.76 -0.28 5.12 16 17 N -0.48 -10.99 18.54 42.15 0.78 -10.21 16 18 C 0.03 0.73 4.42 -27.88 -0.12 0.60 16 19 C -0.53 -13.98 8.60 -34.44 -0.30 -14.27 16 20 H 0.06 1.50 7.59 -52.49 -0.40 1.10 16 21 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 22 N -0.89 -25.57 13.29 55.43 0.74 -24.83 16 23 Si 0.89 21.33 29.54 -169.99 -5.02 16.30 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 27 C 0.05 0.66 5.42 -3.77 -0.02 0.64 16 28 C 0.06 0.59 5.34 -3.77 -0.02 0.57 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.50 6.36 -51.93 -0.33 0.17 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.18 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.18 0.76 8.06 -52.48 -0.42 0.34 16 34 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.85 6.61 -51.93 -0.34 0.51 16 36 H 0.08 0.93 8.07 -51.93 -0.42 0.51 16 37 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.08 1.21 8.02 -51.93 -0.42 0.79 16 39 H 0.06 0.79 8.12 -51.93 -0.42 0.37 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.09 1.09 6.25 -51.93 -0.32 0.77 16 45 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.08 0.76 6.17 -51.93 -0.32 0.44 16 LS Contribution 385.31 15.07 5.81 5.81 Total: -1.00 -31.35 385.31 -10.36 -41.71 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -7.09 Total: -3.36 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -0.89 Total: -3.67 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -0.68 Total: -55.13 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.49 Total: -1.67 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.35 -10.36 -41.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184596993.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.090 kcal (2) G-P(sol) polarization free energy of solvation -31.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds