Wall clock time and date at job start Tue Mar 31 2020 19:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47395 * 2 1 4 4 C 1.50696 * 109.46856 * 239.99743 * 2 1 3 5 5 N 1.29029 * 124.91841 * 286.63955 * 4 2 1 6 6 C 1.31779 * 117.12928 * 179.81555 * 5 4 2 7 7 C 1.33640 * 114.49501 * 0.47529 * 6 5 4 8 8 S 1.70978 * 124.91804 * 106.95094 * 4 2 1 9 9 N 1.46903 * 109.46964 * 119.99495 * 2 1 3 10 10 C 1.46956 * 110.99798 * 175.12286 * 9 2 1 11 11 C 1.53045 * 109.36353 * 183.18955 * 10 9 2 12 12 N 1.46954 * 109.36907 * 301.60254 * 11 10 9 13 13 C 1.46896 * 111.00330 * 183.18810 * 12 11 10 14 14 C 1.53002 * 109.47076 * 169.99828 * 13 12 11 15 15 H 1.09000 * 109.47074 * 55.00046 * 14 13 12 16 16 C 1.47198 * 109.47455 * 294.99857 * 14 13 12 17 17 N 7.05698 * 120.53999 * 76.31149 * 2 1 3 18 18 C 1.53005 * 109.47045 * 175.00192 * 14 13 12 19 19 C 1.50703 * 109.46960 * 185.00286 * 18 14 13 20 20 H 1.07994 * 119.99773 * 359.97438 * 19 18 14 21 21 C 1.37877 * 119.99537 * 179.72083 * 19 18 14 22 22 N 1.31506 * 120.00456 * 0.27615 * 21 19 18 23 23 Si 1.86799 * 119.99559 * 180.27231 * 21 19 18 24 24 H 1.48501 * 109.47302 * 90.00316 * 23 21 19 25 25 H 1.48502 * 109.47204 * 210.00260 * 23 21 19 26 26 H 1.48499 * 109.47531 * 330.00032 * 23 21 19 27 27 C 1.46955 * 110.87794 * 59.31654 * 12 11 10 28 28 C 1.46950 * 111.00068 * 298.92650 * 9 2 1 29 29 H 1.09000 * 109.47426 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47126 * 300.00445 * 1 2 3 31 31 H 1.09001 * 109.47008 * 59.99754 * 1 2 3 32 32 H 1.07993 * 122.75178 * 180.23029 * 6 5 4 33 33 H 1.08008 * 126.03591 * 179.71613 * 7 6 5 34 34 H 1.09005 * 109.48969 * 63.22646 * 10 9 2 35 35 H 1.09004 * 109.50954 * 303.16944 * 10 9 2 36 36 H 1.09005 * 109.49002 * 181.63469 * 11 10 9 37 37 H 1.08997 * 109.49215 * 61.57080 * 11 10 9 38 38 H 1.09002 * 109.47207 * 50.00587 * 13 12 11 39 39 H 1.09000 * 109.47269 * 289.99897 * 13 12 11 40 40 H 1.08992 * 109.47251 * 64.99652 * 18 14 13 41 41 H 1.08997 * 109.46682 * 304.99965 * 18 14 13 42 42 H 0.97004 * 120.00520 * 179.97438 * 22 21 19 43 43 H 1.08996 * 109.48757 * 60.65550 * 27 12 11 44 44 H 1.09001 * 109.48767 * 180.71643 * 27 12 11 45 45 H 1.08992 * 109.49177 * 296.77571 * 28 9 2 46 46 H 1.09000 * 109.49271 * 56.84987 * 28 9 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 7 1.9928 -1.9870 -1.4140 6 6 2.4728 -2.4455 -2.5524 7 6 2.9524 -1.5041 -3.3707 8 16 2.7438 0.0576 -2.5821 9 7 2.0197 -0.6924 1.1995 10 6 3.4840 -0.8139 1.1766 11 6 3.9465 -1.6084 2.4002 12 7 3.4965 -0.9273 3.6221 13 6 3.9861 -1.6197 4.8216 14 6 3.7150 -0.7563 6.0553 15 1 2.6546 -0.5082 6.0992 16 6 4.5058 0.4824 5.9707 17 7 5.1160 1.4383 5.9054 18 6 4.1107 -1.5288 7.3153 19 6 3.7306 -0.7292 8.5349 20 1 3.2549 0.2338 8.4224 21 6 3.9855 -1.2294 9.7941 22 7 4.5652 -2.4019 9.9310 23 14 3.5075 -0.2416 11.3058 24 1 2.1254 -0.5996 11.7144 25 1 4.4465 -0.5480 12.4147 26 1 3.5706 1.2081 10.9902 27 6 2.0321 -0.8059 3.6450 28 6 1.5696 -0.0113 2.4214 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 2.4815 -3.4962 -2.8019 33 1 3.3911 -1.6712 -4.3435 34 1 3.9317 0.1798 1.1978 35 1 3.7921 -1.3323 0.2686 36 1 5.0346 -1.6748 2.4006 37 1 3.5207 -2.6111 2.3650 38 1 5.0581 -1.7938 4.7285 39 1 3.4706 -2.5745 4.9259 40 1 5.1871 -1.6997 7.3138 41 1 3.5908 -2.4867 7.3324 42 1 4.7448 -2.7537 10.8170 43 1 1.5845 -1.7995 3.6239 44 1 1.7244 -0.2872 4.5529 45 1 1.9955 0.9914 2.4567 46 1 0.4816 0.0551 2.4210 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184596993.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:44 Heat of formation + Delta-G solvation = 64.150830 kcal Electronic energy + Delta-G solvation = -26158.142679 eV Core-core repulsion = 22594.942267 eV Total energy + Delta-G solvation = -3563.200412 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.152 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.09184 -40.13226 -38.42872 -36.79089 -35.47966 -33.90949 -32.34531 -32.02111 -30.27826 -28.87276 -26.92638 -26.46595 -24.47946 -24.13173 -23.23215 -22.87074 -21.06482 -20.18019 -19.00094 -18.55347 -18.14983 -17.48631 -16.61681 -16.52605 -15.99890 -15.89144 -15.78273 -15.67275 -15.50024 -15.19665 -14.79152 -14.47506 -14.34476 -14.15129 -14.08643 -13.74958 -13.42960 -13.25469 -13.05256 -13.00814 -12.80991 -12.59052 -12.48708 -12.46445 -12.40338 -12.32477 -12.21026 -12.10287 -11.73525 -11.59137 -11.31978 -11.06126 -10.54037 -10.48616 -10.32777 -9.82958 -9.40413 -9.19928 -8.18454 -6.26712 -0.23594 0.40522 0.81166 1.40966 1.42904 1.52096 1.92940 2.06936 2.14603 2.42207 2.83303 2.92127 3.13717 3.16963 3.35450 3.83373 3.89221 4.01591 4.08305 4.20175 4.31168 4.31940 4.41814 4.44349 4.47649 4.49742 4.57301 4.59557 4.72162 4.75410 4.77362 4.82704 4.92471 4.96013 4.99752 5.07946 5.13455 5.23938 5.32775 5.47565 5.62076 5.79808 5.90731 5.96591 6.11851 6.19419 6.23163 6.84026 6.88235 6.94031 7.41818 8.92497 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.027198 B = 0.002195 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.223126 B =12755.366942 C =12886.498583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.157 3.843 3 H 0.065 0.935 4 C 0.042 3.958 5 N -0.474 5.474 6 C 0.018 3.982 7 C -0.249 4.249 8 S 0.123 5.877 9 N -0.524 5.524 10 C 0.070 3.930 11 C 0.065 3.935 12 N -0.552 5.552 13 C 0.074 3.926 14 C 0.023 3.977 15 H 0.118 0.882 16 C 0.268 3.732 17 N -0.514 5.514 18 C 0.038 3.962 19 C -0.537 4.537 20 H 0.054 0.946 21 C 0.011 3.989 22 N -0.924 5.924 23 Si 0.949 3.051 24 H -0.266 1.266 25 H -0.285 1.285 26 H -0.276 1.276 27 C 0.052 3.948 28 C 0.060 3.940 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.191 0.809 33 H 0.204 0.796 34 H 0.031 0.969 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.043 0.957 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.000 1.000 41 H 0.034 0.966 42 H 0.264 0.736 43 H 0.048 0.952 44 H 0.086 0.914 45 H 0.036 0.964 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.518 1.035 -28.846 30.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.046 3.954 3 H 0.082 0.918 4 C -0.236 4.236 5 N -0.188 5.188 6 C -0.132 4.132 7 C -0.388 4.388 8 S 0.377 5.623 9 N -0.250 5.250 10 C -0.058 4.058 11 C -0.063 4.063 12 N -0.277 5.277 13 C -0.055 4.055 14 C 0.001 3.999 15 H 0.135 0.865 16 C -0.048 4.048 17 N -0.192 5.192 18 C -0.001 4.001 19 C -0.575 4.575 20 H 0.073 0.927 21 C -0.188 4.188 22 N -0.564 5.564 23 Si 0.775 3.225 24 H -0.191 1.191 25 H -0.211 1.211 26 H -0.201 1.201 27 C -0.076 4.076 28 C -0.067 4.067 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.208 0.792 33 H 0.221 0.779 34 H 0.049 0.951 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.061 0.939 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.019 0.981 41 H 0.052 0.948 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.105 0.895 45 H 0.054 0.946 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.528 3.052 -28.689 29.817 hybrid contribution 0.055 -1.032 0.896 1.368 sum -7.474 2.019 -27.793 28.852 Atomic orbital electron populations 1.21829 0.90960 1.03162 1.03312 1.20246 0.97273 0.93493 0.84432 0.91776 1.27037 1.02876 0.92654 1.01007 1.66230 1.18443 1.12730 1.21429 1.22247 0.99496 1.02703 0.88747 1.27461 1.10235 0.93790 1.07353 1.84041 1.55015 1.11485 1.11753 1.62158 1.10500 1.51175 1.01158 1.21991 0.87498 0.98670 0.97635 1.22048 1.00044 0.95779 0.88414 1.62167 1.11811 1.51847 1.01904 1.22022 1.01225 0.94987 0.87232 1.19179 0.98202 0.85828 0.96676 0.86462 1.29305 0.92340 0.93863 0.89339 1.80973 1.11973 1.13656 1.12578 1.18987 0.96165 0.95325 0.89576 1.21531 1.39562 1.04372 0.92067 0.92745 1.25718 0.95158 0.95918 1.02025 1.70032 1.43307 1.19036 1.23986 0.85685 0.78595 0.78914 0.79322 1.19088 1.21087 1.20076 1.22279 0.86719 1.00187 0.98417 1.22260 1.01395 0.95185 0.87906 0.92092 0.90094 0.90900 0.79202 0.77921 0.95083 0.91059 0.90336 0.93902 0.90612 0.91461 0.98109 0.94751 0.92729 0.93334 0.89537 0.94612 0.87786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 8.98 71.98 0.65 -1.27 16 2 C 0.16 2.74 2.57 44.17 0.11 2.86 16 3 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 4 C 0.04 0.77 4.55 88.52 0.40 1.17 16 5 N -0.47 -9.74 10.21 -191.46 -1.96 -11.69 16 6 C 0.02 0.29 11.35 83.66 0.95 1.24 16 7 C -0.25 -2.98 11.36 66.78 0.76 -2.22 16 8 S 0.12 1.71 23.18 -56.49 -1.31 0.40 16 9 N -0.52 -10.84 4.55 -874.89 -3.98 -14.83 16 10 C 0.07 1.58 5.33 86.31 0.46 2.04 16 11 C 0.07 1.56 5.61 86.31 0.48 2.04 16 12 N -0.55 -14.64 4.41 -895.74 -3.95 -18.59 16 13 C 0.07 2.18 4.32 86.30 0.37 2.55 16 14 C 0.02 0.83 2.14 -12.60 -0.03 0.80 16 15 H 0.12 3.87 6.28 -2.39 -0.01 3.86 16 16 C 0.27 11.13 13.67 89.44 1.22 12.35 16 17 N -0.51 -23.37 18.54 20.00 0.37 -23.00 16 18 C 0.04 1.77 4.42 29.85 0.13 1.91 16 19 C -0.54 -28.49 8.60 25.60 0.22 -28.27 16 20 H 0.05 2.85 7.59 -2.91 -0.02 2.83 16 21 C 0.01 0.59 5.46 84.66 0.46 1.05 16 22 N -0.92 -53.22 13.29 21.45 0.28 -52.94 16 23 Si 0.95 43.49 29.54 68.60 2.03 45.52 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 25 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 26 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 27 C 0.05 1.20 5.42 86.31 0.47 1.67 16 28 C 0.06 1.20 5.34 86.31 0.46 1.66 16 29 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.08 0.97 6.36 -2.39 -0.02 0.96 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.19 2.10 8.06 -2.91 -0.02 2.07 16 33 H 0.20 1.15 8.06 -2.91 -0.02 1.13 16 34 H 0.03 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.07 1.62 6.61 -2.39 -0.02 1.61 16 36 H 0.08 1.83 8.07 -2.38 -0.02 1.81 16 37 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.08 2.28 8.02 -2.39 -0.02 2.26 16 39 H 0.07 1.84 8.12 -2.39 -0.02 1.82 16 40 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 41 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 43 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.09 2.01 6.25 -2.39 -0.01 2.00 16 45 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.10 1.66 6.17 -2.39 -0.01 1.65 16 Total: -1.00 -66.35 385.31 -0.42 -66.76 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: 0.97 Total: 8.78 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: 7.13 Total: -0.42 kcal Atomic # 7 Polarization: -111.81 SS G_CDS: -9.23 Total: -121.04 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -1.31 Total: 0.40 kcal Total: -66.35 -0.42 -66.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184596993.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.914 kcal (2) G-P(sol) polarization free energy of solvation -66.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds