Wall clock time and date at job start Tue Mar 31 2020 19:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47110 * 2 1 4 4 C 1.50698 * 109.47829 * 120.00515 * 2 1 3 5 5 N 1.29025 * 124.91572 * 75.30502 * 4 2 1 6 6 C 1.31783 * 117.12083 * 180.23374 * 5 4 2 7 7 C 1.33635 * 114.50398 * 359.48041 * 6 5 4 8 8 S 1.70979 * 124.91354 * 255.00327 * 4 2 1 9 9 N 1.46904 * 109.47373 * 240.00880 * 2 1 3 10 10 C 1.46951 * 111.00287 * 183.79660 * 9 2 1 11 11 C 1.53050 * 109.36221 * 176.80943 * 10 9 2 12 12 N 1.46958 * 109.36776 * 58.40015 * 11 10 9 13 13 C 1.46894 * 110.99844 * 176.81010 * 12 11 10 14 14 C 1.53010 * 109.47076 * 199.62709 * 13 12 11 15 15 H 1.09001 * 109.46440 * 305.22258 * 14 13 12 16 16 C 1.47200 * 109.46932 * 65.21732 * 14 13 12 17 17 N 7.07467 * 124.51525 * 283.13455 * 2 1 3 18 18 C 1.53001 * 109.47087 * 185.22146 * 14 13 12 19 19 C 1.50705 * 109.46822 * 174.99872 * 18 14 13 20 20 H 1.07996 * 119.99700 * 359.97438 * 19 18 14 21 21 C 1.37870 * 119.99797 * 179.97438 * 19 18 14 22 22 N 1.31511 * 120.00322 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00006 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47161 * 60.00161 * 23 21 19 25 25 H 1.48502 * 109.47679 * 180.02562 * 23 21 19 26 26 H 1.48510 * 109.47337 * 300.00388 * 23 21 19 27 27 C 1.46951 * 110.88075 * 300.67897 * 12 11 10 28 28 C 1.46959 * 110.99939 * 59.99009 * 9 2 1 29 29 H 1.09001 * 109.46616 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46928 * 299.99003 * 1 2 3 31 31 H 1.08992 * 109.47486 * 59.99693 * 1 2 3 32 32 H 1.08003 * 122.74855 * 179.75060 * 6 5 4 33 33 H 1.07997 * 126.04138 * 180.27187 * 7 6 5 34 34 H 1.09002 * 109.48478 * 296.77295 * 10 9 2 35 35 H 1.08996 * 109.49111 * 56.83878 * 10 9 2 36 36 H 1.09003 * 109.49022 * 298.42675 * 11 10 9 37 37 H 1.09007 * 109.50592 * 178.38121 * 11 10 9 38 38 H 1.09002 * 109.47643 * 319.62360 * 13 12 11 39 39 H 1.09003 * 109.47635 * 79.62717 * 13 12 11 40 40 H 1.08996 * 109.47275 * 294.99621 * 18 14 13 41 41 H 1.09000 * 109.47059 * 55.00352 * 18 14 13 42 42 H 0.96999 * 120.00617 * 179.97438 * 22 21 19 43 43 H 1.09004 * 109.48961 * 299.35581 * 27 12 11 44 44 H 1.08996 * 109.49111 * 179.28838 * 27 12 11 45 45 H 1.08996 * 109.49221 * 303.15939 * 28 9 2 46 46 H 1.08996 * 109.48808 * 63.23055 * 28 9 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7105 1.2303 5 7 2.0257 -1.9896 1.3990 6 6 2.4995 -2.4476 2.5402 7 6 2.9399 -1.5029 3.3766 8 16 2.7009 0.0615 2.6018 9 7 2.0197 -0.6923 -1.1996 10 6 3.4859 -0.7911 -1.1890 11 6 3.9497 -1.5861 -2.4118 12 7 3.4785 -0.9197 -3.6338 13 6 3.9681 -1.6121 -4.8333 14 6 3.8932 -0.6669 -6.0341 15 1 2.8769 -0.2853 -6.1332 16 6 4.8219 0.4572 -5.8325 17 7 5.5387 1.3247 -5.6769 18 6 4.2792 -1.4257 -7.3054 19 6 4.0876 -0.5306 -8.5025 20 1 3.7261 0.4784 -8.3698 21 6 4.3736 -0.9998 -9.7669 22 7 4.8133 -2.2287 -9.9285 23 14 4.1354 0.1095 -11.2509 24 1 4.9941 1.3131 -11.1121 25 1 4.5102 -0.6269 -12.4848 26 1 2.7119 0.5242 -11.3356 27 6 2.0123 -0.8209 -3.6444 28 6 1.5484 -0.0259 -2.4216 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 2.5333 -3.5006 2.7783 33 1 3.3669 -1.6689 4.3545 34 1 3.9179 0.2092 -1.2203 35 1 3.8096 -1.2992 -0.2806 36 1 3.5397 -2.5951 -2.3665 37 1 5.0386 -1.6363 -2.4217 38 1 5.0019 -1.9209 -4.6780 39 1 3.3512 -2.4904 -5.0232 40 1 5.3238 -1.7308 -7.2434 41 1 3.6482 -2.3087 -7.4072 42 1 5.0142 -2.5590 -10.8181 43 1 1.5802 -1.8212 -3.6131 44 1 1.6886 -0.3129 -4.5528 45 1 0.4596 0.0238 -2.4119 46 1 1.9585 0.9830 -2.4669 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184597014.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:04 Heat of formation + Delta-G solvation = 83.692702 kcal Electronic energy + Delta-G solvation = -26130.774816 eV Core-core repulsion = 22568.421803 eV Total energy + Delta-G solvation = -3562.353013 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.152 amu Computer time = 21.85 seconds Orbital eigenvalues (eV) -40.34771 -39.21817 -37.10995 -35.49029 -33.67417 -32.45668 -31.25861 -30.96150 -29.60093 -27.40489 -26.06499 -25.23303 -23.55687 -22.69564 -22.07958 -21.62528 -20.21092 -19.41888 -18.34717 -16.85374 -16.62303 -16.28429 -15.85040 -15.17762 -15.02694 -14.91398 -14.73106 -14.51519 -14.41805 -14.20815 -13.72566 -13.61810 -13.05128 -12.84802 -12.55062 -12.42044 -12.30886 -12.07976 -11.89158 -11.85523 -11.68944 -11.45357 -11.26140 -11.16980 -11.03302 -11.00338 -10.81627 -10.60336 -10.49457 -10.12226 -9.83003 -9.70769 -9.50441 -9.23202 -9.21736 -8.53174 -8.43695 -8.14824 -6.07774 -4.10919 0.37119 0.99699 1.40634 2.56158 3.32160 3.36442 3.40094 3.63428 3.75984 3.76531 3.86913 4.01577 4.42769 4.50818 4.74352 4.82262 4.85261 4.92571 4.94320 5.08369 5.16341 5.23811 5.30196 5.30763 5.33496 5.35721 5.45050 5.56710 5.68602 5.71135 5.76568 5.79507 5.90408 5.92891 5.99776 6.03811 6.11647 6.38997 6.52967 6.76562 6.84620 7.20295 7.22398 7.45119 7.50134 7.55461 7.87291 8.25280 8.62277 8.93637 9.54359 11.03088 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.027304 B = 0.002182 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.237400 B =12831.858385 C =12941.298398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.160 3.840 3 H 0.060 0.940 4 C 0.062 3.938 5 N -0.445 5.445 6 C 0.039 3.961 7 C -0.261 4.261 8 S 0.107 5.893 9 N -0.517 5.517 10 C 0.061 3.939 11 C 0.062 3.938 12 N -0.544 5.544 13 C 0.063 3.937 14 C 0.013 3.987 15 H 0.099 0.901 16 C 0.258 3.742 17 N -0.484 5.484 18 C 0.031 3.969 19 C -0.526 4.526 20 H 0.056 0.944 21 C 0.062 3.938 22 N -0.892 5.892 23 Si 0.891 3.109 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.275 1.275 27 C 0.056 3.944 28 C 0.055 3.945 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.176 0.824 33 H 0.176 0.824 34 H 0.040 0.960 35 H 0.073 0.927 36 H 0.045 0.955 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.057 0.943 40 H 0.025 0.975 41 H 0.037 0.963 42 H 0.263 0.737 43 H 0.047 0.953 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.854 0.341 27.206 28.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.048 3.952 3 H 0.077 0.923 4 C -0.217 4.217 5 N -0.159 5.159 6 C -0.113 4.113 7 C -0.400 4.400 8 S 0.361 5.639 9 N -0.243 5.243 10 C -0.067 4.067 11 C -0.066 4.066 12 N -0.269 5.269 13 C -0.065 4.065 14 C -0.009 4.009 15 H 0.117 0.883 16 C -0.058 4.058 17 N -0.161 5.161 18 C -0.007 4.007 19 C -0.564 4.564 20 H 0.074 0.926 21 C -0.140 4.140 22 N -0.531 5.531 23 Si 0.719 3.281 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.201 1.201 27 C -0.072 4.072 28 C -0.073 4.073 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.193 0.807 33 H 0.194 0.806 34 H 0.058 0.942 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.044 0.956 41 H 0.055 0.945 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.105 0.895 45 H 0.103 0.897 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -7.714 2.213 27.175 28.335 hybrid contribution -0.165 -0.767 -0.599 0.987 sum -7.879 1.446 26.576 27.757 Atomic orbital electron populations 1.21879 0.91964 1.03827 1.02261 1.20155 0.96430 0.93494 0.85146 0.92278 1.27023 1.02126 0.92475 1.00112 1.66250 1.16986 1.12013 1.20629 1.21950 0.99087 1.01555 0.88662 1.27100 1.11804 0.94501 1.06599 1.84122 1.56710 1.11091 1.12014 1.62148 1.10536 1.51211 1.00445 1.22136 0.86825 0.99452 0.98293 1.22075 0.99801 0.96009 0.88731 1.62182 1.10056 1.52518 1.02102 1.22219 1.01002 0.95042 0.88270 1.19212 0.95695 0.89084 0.96900 0.88332 1.28881 0.93184 0.93489 0.90280 1.80972 1.11403 1.12012 1.11665 1.19169 0.97960 0.95366 0.88225 1.21099 1.44994 0.99048 0.91241 0.92584 1.24948 0.94915 0.95042 0.99058 1.69925 1.44639 1.15511 1.22977 0.86661 0.78746 0.80754 0.81948 1.20245 1.21214 1.20057 1.22204 0.87671 0.99771 0.97586 1.22291 1.00213 0.96219 0.88562 0.90662 0.92080 0.91027 0.80736 0.80638 0.94194 0.90915 0.93710 0.90485 0.90469 0.92443 0.95643 0.94458 0.92756 0.93518 0.89481 0.89713 0.93827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 8.95 37.16 0.33 -0.76 16 2 C 0.16 1.48 2.57 -68.86 -0.18 1.30 16 3 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 4 C 0.06 0.59 4.62 -13.46 -0.06 0.53 16 5 N -0.45 -4.79 10.17 -11.86 -0.12 -4.91 16 6 C 0.04 0.33 11.35 -19.19 -0.22 0.11 16 7 C -0.26 -1.84 11.37 29.12 0.33 -1.51 16 8 S 0.11 0.83 23.18 -107.50 -2.49 -1.67 16 9 N -0.52 -5.61 4.54 -227.88 -1.03 -6.65 16 10 C 0.06 0.71 5.34 -3.77 -0.02 0.69 16 11 C 0.06 0.78 5.56 -3.77 -0.02 0.76 16 12 N -0.54 -7.46 4.35 -234.46 -1.02 -8.48 16 13 C 0.06 0.96 4.36 -3.82 -0.02 0.94 16 14 C 0.01 0.24 2.27 -93.40 -0.21 0.03 16 15 H 0.10 1.71 6.73 -51.93 -0.35 1.36 16 16 C 0.26 5.45 13.67 -20.76 -0.28 5.16 16 17 N -0.48 -11.07 18.54 42.15 0.78 -10.29 16 18 C 0.03 0.73 4.42 -27.88 -0.12 0.61 16 19 C -0.53 -14.02 8.60 -34.44 -0.30 -14.31 16 20 H 0.06 1.49 7.59 -52.49 -0.40 1.09 16 21 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 22 N -0.89 -25.60 13.29 55.43 0.74 -24.86 16 23 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 27 C 0.06 0.67 5.43 -3.77 -0.02 0.65 16 28 C 0.05 0.58 5.32 -3.76 -0.02 0.56 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.49 6.34 -51.93 -0.33 0.16 16 32 H 0.18 1.09 8.06 -52.48 -0.42 0.66 16 33 H 0.18 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.86 6.62 -51.93 -0.34 0.52 16 36 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.95 8.00 -51.92 -0.42 0.54 16 38 H 0.08 1.18 7.84 -51.93 -0.41 0.77 16 39 H 0.06 0.82 7.99 -51.93 -0.42 0.40 16 40 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.09 1.04 6.72 -51.93 -0.35 0.69 16 45 H 0.08 0.74 6.14 -51.93 -0.32 0.42 16 46 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 385.88 15.07 5.82 5.82 Total: -1.00 -31.40 385.88 -10.37 -41.77 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -7.11 Total: -3.46 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -0.90 Total: -3.61 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: -0.66 Total: -55.19 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.49 Total: -1.67 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.40 -10.37 -41.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184597014.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.465 kcal (2) G-P(sol) polarization free energy of solvation -31.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 21.85 seconds