Wall clock time and date at job start Tue Mar 31 2020 19:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47110 * 2 1 4 4 C 1.50698 * 109.47829 * 120.00515 * 2 1 3 5 5 N 1.29025 * 124.91572 * 75.30502 * 4 2 1 6 6 C 1.31783 * 117.12083 * 180.23374 * 5 4 2 7 7 C 1.33635 * 114.50398 * 359.48041 * 6 5 4 8 8 S 1.70979 * 124.91354 * 255.00327 * 4 2 1 9 9 N 1.46904 * 109.47373 * 240.00880 * 2 1 3 10 10 C 1.46951 * 111.00287 * 183.79660 * 9 2 1 11 11 C 1.53050 * 109.36221 * 176.80943 * 10 9 2 12 12 N 1.46958 * 109.36776 * 58.40015 * 11 10 9 13 13 C 1.46894 * 110.99844 * 176.81010 * 12 11 10 14 14 C 1.53010 * 109.47076 * 199.62709 * 13 12 11 15 15 H 1.09001 * 109.46440 * 305.22258 * 14 13 12 16 16 C 1.47200 * 109.46932 * 65.21732 * 14 13 12 17 17 N 7.07467 * 124.51525 * 283.13455 * 2 1 3 18 18 C 1.53001 * 109.47087 * 185.22146 * 14 13 12 19 19 C 1.50705 * 109.46822 * 174.99872 * 18 14 13 20 20 H 1.07996 * 119.99700 * 359.97438 * 19 18 14 21 21 C 1.37870 * 119.99797 * 179.97438 * 19 18 14 22 22 N 1.31511 * 120.00322 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00006 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47161 * 60.00161 * 23 21 19 25 25 H 1.48502 * 109.47679 * 180.02562 * 23 21 19 26 26 H 1.48510 * 109.47337 * 300.00388 * 23 21 19 27 27 C 1.46951 * 110.88075 * 300.67897 * 12 11 10 28 28 C 1.46959 * 110.99939 * 59.99009 * 9 2 1 29 29 H 1.09001 * 109.46616 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46928 * 299.99003 * 1 2 3 31 31 H 1.08992 * 109.47486 * 59.99693 * 1 2 3 32 32 H 1.08003 * 122.74855 * 179.75060 * 6 5 4 33 33 H 1.07997 * 126.04138 * 180.27187 * 7 6 5 34 34 H 1.09002 * 109.48478 * 296.77295 * 10 9 2 35 35 H 1.08996 * 109.49111 * 56.83878 * 10 9 2 36 36 H 1.09003 * 109.49022 * 298.42675 * 11 10 9 37 37 H 1.09007 * 109.50592 * 178.38121 * 11 10 9 38 38 H 1.09002 * 109.47643 * 319.62360 * 13 12 11 39 39 H 1.09003 * 109.47635 * 79.62717 * 13 12 11 40 40 H 1.08996 * 109.47275 * 294.99621 * 18 14 13 41 41 H 1.09000 * 109.47059 * 55.00352 * 18 14 13 42 42 H 0.96999 * 120.00617 * 179.97438 * 22 21 19 43 43 H 1.09004 * 109.48961 * 299.35581 * 27 12 11 44 44 H 1.08996 * 109.49111 * 179.28838 * 27 12 11 45 45 H 1.08996 * 109.49221 * 303.15939 * 28 9 2 46 46 H 1.08996 * 109.48808 * 63.23055 * 28 9 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7105 1.2303 5 7 2.0257 -1.9896 1.3990 6 6 2.4995 -2.4476 2.5402 7 6 2.9399 -1.5029 3.3766 8 16 2.7009 0.0615 2.6018 9 7 2.0197 -0.6923 -1.1996 10 6 3.4859 -0.7911 -1.1890 11 6 3.9497 -1.5861 -2.4118 12 7 3.4785 -0.9197 -3.6338 13 6 3.9681 -1.6121 -4.8333 14 6 3.8932 -0.6669 -6.0341 15 1 2.8769 -0.2853 -6.1332 16 6 4.8219 0.4572 -5.8325 17 7 5.5387 1.3247 -5.6769 18 6 4.2792 -1.4257 -7.3054 19 6 4.0876 -0.5306 -8.5025 20 1 3.7261 0.4784 -8.3698 21 6 4.3736 -0.9998 -9.7669 22 7 4.8133 -2.2287 -9.9285 23 14 4.1354 0.1095 -11.2509 24 1 4.9941 1.3131 -11.1121 25 1 4.5102 -0.6269 -12.4848 26 1 2.7119 0.5242 -11.3356 27 6 2.0123 -0.8209 -3.6444 28 6 1.5484 -0.0259 -2.4216 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 2.5333 -3.5006 2.7783 33 1 3.3669 -1.6689 4.3545 34 1 3.9179 0.2092 -1.2203 35 1 3.8096 -1.2992 -0.2806 36 1 3.5397 -2.5951 -2.3665 37 1 5.0386 -1.6363 -2.4217 38 1 5.0019 -1.9209 -4.6780 39 1 3.3512 -2.4904 -5.0232 40 1 5.3238 -1.7308 -7.2434 41 1 3.6482 -2.3087 -7.4072 42 1 5.0142 -2.5590 -10.8181 43 1 1.5802 -1.8212 -3.6131 44 1 1.6886 -0.3129 -4.5528 45 1 0.4596 0.0238 -2.4119 46 1 1.9585 0.9830 -2.4669 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184597014.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:48 Heat of formation + Delta-G solvation = 63.499988 kcal Electronic energy + Delta-G solvation = -26131.650438 eV Core-core repulsion = 22568.421803 eV Total energy + Delta-G solvation = -3563.228635 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.152 amu Computer time = 5.38 seconds Orbital eigenvalues (eV) -41.08294 -40.10976 -38.40989 -36.79543 -35.47821 -33.90493 -32.33629 -32.03460 -30.27894 -28.87190 -26.93545 -26.42541 -24.43925 -24.11972 -23.27504 -22.86635 -21.05594 -20.18374 -18.99411 -18.54519 -18.15820 -17.46406 -16.61604 -16.52720 -16.00238 -15.90759 -15.74102 -15.64111 -15.49587 -15.21428 -14.79570 -14.48980 -14.33439 -14.14088 -14.04478 -13.74624 -13.44978 -13.26251 -13.05252 -12.98212 -12.82959 -12.55449 -12.47940 -12.45848 -12.41298 -12.32154 -12.19441 -12.08059 -11.75978 -11.59716 -11.31876 -11.07118 -10.53648 -10.48663 -10.32798 -9.82950 -9.40179 -9.19780 -8.17886 -6.26211 -0.23574 0.40397 0.80995 1.42014 1.43676 1.50698 1.92969 2.07936 2.15638 2.42551 2.83140 2.92428 3.14079 3.17425 3.36779 3.83518 3.89729 4.04337 4.08124 4.20111 4.31080 4.33386 4.41544 4.44793 4.47939 4.50731 4.58593 4.59529 4.72709 4.76380 4.77756 4.82715 4.92235 4.95666 4.99247 5.08017 5.14188 5.23994 5.32334 5.48149 5.62892 5.80344 5.91036 5.97109 6.12294 6.20505 6.23902 6.84551 6.88261 6.94930 7.42207 8.92832 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.027304 B = 0.002182 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.237400 B =12831.858385 C =12941.298398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.157 3.843 3 H 0.064 0.936 4 C 0.042 3.958 5 N -0.474 5.474 6 C 0.018 3.982 7 C -0.250 4.250 8 S 0.123 5.877 9 N -0.524 5.524 10 C 0.071 3.929 11 C 0.066 3.934 12 N -0.553 5.553 13 C 0.074 3.926 14 C 0.026 3.974 15 H 0.117 0.883 16 C 0.269 3.731 17 N -0.516 5.516 18 C 0.038 3.962 19 C -0.538 4.538 20 H 0.054 0.946 21 C 0.011 3.989 22 N -0.924 5.924 23 Si 0.948 3.052 24 H -0.281 1.281 25 H -0.283 1.283 26 H -0.262 1.262 27 C 0.054 3.946 28 C 0.059 3.941 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.191 0.809 33 H 0.204 0.796 34 H 0.030 0.970 35 H 0.070 0.930 36 H 0.043 0.957 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.000 1.000 41 H 0.035 0.965 42 H 0.264 0.736 43 H 0.048 0.952 44 H 0.089 0.911 45 H 0.105 0.895 46 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.993 0.874 28.430 30.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.045 3.955 3 H 0.082 0.918 4 C -0.236 4.236 5 N -0.188 5.188 6 C -0.132 4.132 7 C -0.389 4.389 8 S 0.377 5.623 9 N -0.250 5.250 10 C -0.057 4.057 11 C -0.062 4.062 12 N -0.278 5.278 13 C -0.055 4.055 14 C 0.004 3.996 15 H 0.134 0.866 16 C -0.048 4.048 17 N -0.194 5.194 18 C 0.000 4.000 19 C -0.576 4.576 20 H 0.072 0.928 21 C -0.188 4.188 22 N -0.564 5.564 23 Si 0.774 3.226 24 H -0.207 1.207 25 H -0.208 1.208 26 H -0.186 1.186 27 C -0.074 4.074 28 C -0.068 4.068 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.208 0.792 33 H 0.221 0.779 34 H 0.048 0.952 35 H 0.089 0.911 36 H 0.061 0.939 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.018 0.982 41 H 0.053 0.947 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.107 0.893 45 H 0.123 0.877 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.870 2.753 28.413 29.892 hybrid contribution 0.208 -0.941 -0.892 1.313 sum -8.662 1.812 27.521 28.909 Atomic orbital electron populations 1.21838 0.90884 1.03177 1.03394 1.20249 0.97278 0.93477 0.84462 0.91791 1.27057 1.03020 0.92590 1.00910 1.66236 1.17832 1.12780 1.21956 1.22250 0.99751 1.02698 0.88519 1.27458 1.10400 0.93720 1.07288 1.84038 1.55986 1.11218 1.11088 1.62146 1.09775 1.51823 1.01217 1.21976 0.87588 0.98573 0.97592 1.22049 0.99713 0.95948 0.88530 1.62128 1.11322 1.52495 1.01821 1.22025 1.01336 0.94446 0.87699 1.19141 0.95711 0.88411 0.96359 0.86561 1.29341 0.92763 0.93320 0.89326 1.80971 1.12416 1.13232 1.12798 1.18986 0.96334 0.95250 0.89475 1.21511 1.44212 0.99359 0.92530 0.92754 1.25715 0.94956 0.96276 1.01853 1.70024 1.45821 1.16962 1.23553 0.85755 0.79155 0.78755 0.78952 1.20726 1.20792 1.18640 1.22279 0.86475 1.00139 0.98497 1.22280 1.01323 0.95361 0.87867 0.92092 0.90870 0.89982 0.79219 0.77937 0.95192 0.91141 0.93884 0.90680 0.90839 0.91141 0.98181 0.94711 0.92729 0.93394 0.89305 0.87695 0.94543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 8.95 71.98 0.64 -1.24 16 2 C 0.16 2.72 2.57 44.17 0.11 2.84 16 3 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 4 C 0.04 0.77 4.62 88.52 0.41 1.18 16 5 N -0.47 -9.78 10.17 -191.45 -1.95 -11.73 16 6 C 0.02 0.28 11.35 83.66 0.95 1.23 16 7 C -0.25 -3.02 11.37 66.78 0.76 -2.26 16 8 S 0.12 1.72 23.18 -56.49 -1.31 0.41 16 9 N -0.52 -10.78 4.54 -874.87 -3.97 -14.75 16 10 C 0.07 1.61 5.34 86.31 0.46 2.07 16 11 C 0.07 1.60 5.56 86.31 0.48 2.08 16 12 N -0.55 -14.60 4.35 -895.69 -3.89 -18.49 16 13 C 0.07 2.17 4.36 86.31 0.38 2.54 16 14 C 0.03 0.93 2.27 -12.60 -0.03 0.90 16 15 H 0.12 3.85 6.73 -2.39 -0.02 3.84 16 16 C 0.27 11.20 13.67 89.44 1.22 12.43 16 17 N -0.52 -23.56 18.54 20.01 0.37 -23.19 16 18 C 0.04 1.78 4.42 29.85 0.13 1.91 16 19 C -0.54 -28.56 8.60 25.60 0.22 -28.34 16 20 H 0.05 2.85 7.59 -2.91 -0.02 2.82 16 21 C 0.01 0.60 5.46 84.65 0.46 1.06 16 22 N -0.92 -53.28 13.29 21.44 0.28 -52.99 16 23 Si 0.95 43.50 29.54 68.60 2.03 45.53 16 24 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 25 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 26 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 27 C 0.05 1.22 5.43 86.31 0.47 1.68 16 28 C 0.06 1.16 5.32 86.31 0.46 1.62 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.08 0.95 6.34 -2.39 -0.02 0.93 16 32 H 0.19 2.12 8.06 -2.91 -0.02 2.10 16 33 H 0.20 1.18 8.06 -2.91 -0.02 1.16 16 34 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.07 1.63 6.62 -2.39 -0.02 1.62 16 36 H 0.04 1.06 8.14 -2.39 -0.02 1.05 16 37 H 0.07 1.83 8.00 -2.38 -0.02 1.81 16 38 H 0.07 2.21 7.84 -2.39 -0.02 2.19 16 39 H 0.07 1.90 7.99 -2.39 -0.02 1.89 16 40 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 41 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 43 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 44 H 0.09 1.96 6.72 -2.39 -0.02 1.94 16 45 H 0.11 1.61 6.14 -2.39 -0.01 1.60 16 46 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -66.52 385.88 -0.34 -66.85 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: 0.97 Total: 8.65 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: 7.13 Total: -0.29 kcal Atomic # 7 Polarization: -112.00 SS G_CDS: -9.15 Total: -121.15 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -1.31 Total: 0.41 kcal Total: -66.52 -0.34 -66.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184597014.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.353 kcal (2) G-P(sol) polarization free energy of solvation -66.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.38 seconds