Wall clock time and date at job start Tue Mar 31 2020 17:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35987 * 116.99771 * 2 1 4 4 C 1.38723 * 120.06628 * 0.03345 * 3 2 1 5 5 C 1.37950 * 119.89453 * 179.66357 * 4 3 2 6 6 C 1.39120 * 120.29407 * 0.50465 * 5 4 3 7 7 C 1.38354 * 119.78560 * 359.63279 * 6 5 4 8 8 C 1.38502 * 119.87856 * 0.02949 * 7 6 5 9 9 C 1.50783 * 121.40908 * 179.97438 * 7 6 5 10 10 C 1.53072 * 109.68783 * 17.76127 * 9 7 6 11 11 H 1.09004 * 109.69827 * 71.47123 * 10 9 7 12 12 C 1.50698 * 109.70064 * 192.06874 * 10 9 7 13 13 O 1.20825 * 120.00142 * 358.83090 * 12 10 9 14 14 O 1.34225 * 120.00073 * 178.82976 * 12 10 9 15 15 C 1.45201 * 117.00114 * 180.02562 * 14 12 10 16 16 C 1.52998 * 109.47360 * 180.02562 * 15 14 12 17 17 C 1.53005 * 109.46965 * 300.00025 * 16 15 14 18 18 C 1.53000 * 109.47488 * 59.99842 * 16 15 14 19 19 C 1.50700 * 109.47327 * 180.02562 * 16 15 14 20 20 H 1.07997 * 120.00094 * 359.97438 * 19 16 15 21 21 C 1.37875 * 119.99894 * 179.97438 * 19 16 15 22 22 N 1.31518 * 120.00204 * 0.02562 * 21 19 16 23 23 Si 1.86802 * 119.99951 * 179.97438 * 21 19 16 24 24 H 1.48501 * 109.46990 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47157 * 120.00408 * 23 21 19 26 26 H 1.48504 * 109.47108 * 240.00393 * 23 21 19 27 27 C 1.53412 * 108.28981 * 311.76973 * 10 9 7 28 28 O 1.35955 * 118.43090 * 179.90442 * 6 5 4 29 29 H 1.08994 * 109.47729 * 59.99133 * 1 2 3 30 30 H 1.09004 * 109.47076 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47155 * 299.99258 * 1 2 3 32 32 H 1.07998 * 120.05283 * 359.88012 * 4 3 2 33 33 H 1.07999 * 119.84986 * 180.23218 * 5 4 3 34 34 H 1.08002 * 119.85754 * 180.14409 * 8 7 6 35 35 H 1.08997 * 109.43481 * 257.69589 * 9 7 6 36 36 H 1.09000 * 109.43426 * 137.82524 * 9 7 6 37 37 H 1.09004 * 109.47210 * 299.99905 * 15 14 12 38 38 H 1.08998 * 109.47466 * 60.00214 * 15 14 12 39 39 H 1.08999 * 109.46798 * 59.99785 * 17 16 15 40 40 H 1.08997 * 109.47370 * 179.97438 * 17 16 15 41 41 H 1.08997 * 109.47034 * 300.00334 * 17 16 15 42 42 H 1.08996 * 109.46847 * 59.99662 * 18 16 15 43 43 H 1.08997 * 109.47447 * 180.02562 * 18 16 15 44 44 H 1.09007 * 109.47023 * 300.00437 * 18 16 15 45 45 H 0.97001 * 119.99750 * 179.97438 * 22 21 19 46 46 H 1.09001 * 109.68302 * 305.03682 * 27 10 9 47 47 H 1.08999 * 109.71377 * 184.49432 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2921 2.3760 0.0007 5 6 1.9220 3.6032 0.0077 6 6 3.3111 3.6791 0.0035 7 6 4.0628 2.5176 0.0000 8 6 3.4295 1.2859 0.0000 9 6 5.5701 2.5572 -0.0052 10 6 6.0512 3.9424 0.4339 11 1 5.8680 4.0739 1.5004 12 6 7.5245 4.0822 0.1498 13 8 8.1366 3.1598 -0.3342 14 8 8.1567 5.2315 0.4343 15 6 9.5758 5.2952 0.1335 16 6 10.1187 6.6714 0.5238 17 6 9.3807 7.7537 -0.2668 18 6 9.9042 6.8983 2.0216 19 6 11.5914 6.7377 0.2110 20 1 12.0904 5.8836 -0.2224 21 6 12.3017 7.8888 0.4782 22 7 11.6942 8.9287 1.0064 23 14 14.1274 7.9707 0.0911 24 1 14.5681 6.6784 -0.4928 25 1 14.3785 9.0642 -0.8817 26 1 14.8867 8.2349 1.3397 27 6 5.2691 4.9974 -0.3591 28 8 3.8922 4.9082 0.0087 29 1 -0.3634 0.5139 -0.8898 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 0.2134 2.3216 -0.0007 33 1 1.3340 4.5092 0.0121 34 1 4.0167 0.3794 -0.0005 35 1 5.9349 2.3486 -1.0109 36 1 5.9550 1.8046 0.6830 37 1 10.1017 4.5244 0.6970 38 1 9.7287 5.1333 -0.9335 39 1 8.3154 7.7059 -0.0409 40 1 9.7671 8.7341 0.0116 41 1 9.5335 7.5921 -1.3338 42 1 10.4299 6.1272 2.5847 43 1 10.2906 7.8788 2.2996 44 1 8.8389 6.8504 2.2474 45 1 12.1941 9.7384 1.1947 46 1 5.3763 4.8079 -1.4271 47 1 5.6489 5.9913 -0.1227 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184784235.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:02 Heat of formation + Delta-G solvation = -146.529861 kcal Electronic energy + Delta-G solvation = -28647.362801 eV Core-core repulsion = 24567.688215 eV Total energy + Delta-G solvation = -4079.674586 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.23019 -40.11500 -39.30980 -36.79759 -36.64467 -34.93140 -34.39513 -31.42658 -31.00603 -30.19129 -27.54693 -26.27373 -25.74336 -25.65305 -25.22854 -24.14936 -22.91397 -21.32040 -19.85608 -18.91000 -18.18397 -18.01880 -17.33784 -17.06863 -16.06982 -15.99522 -15.86889 -15.80722 -15.27408 -14.84143 -14.69093 -14.52182 -14.07099 -13.69384 -13.48364 -13.33322 -13.19338 -13.06095 -12.85893 -12.77731 -12.24434 -12.08891 -11.81582 -11.54256 -11.32174 -11.29425 -11.20986 -11.01314 -10.81687 -10.70330 -10.59153 -10.46011 -10.26588 -10.10566 -9.95979 -9.46333 -9.36001 -9.11491 -8.78791 -8.40974 -7.96328 -6.05070 -4.16740 0.95470 1.20198 2.40813 2.83233 3.06730 3.17721 3.24824 3.33496 3.37920 3.46975 4.29015 4.34388 4.37585 4.48400 4.55873 4.68803 4.79125 4.79692 4.88674 4.96919 5.10702 5.19022 5.21519 5.28344 5.41225 5.45339 5.61368 5.67921 5.71274 5.82010 6.01222 6.04372 6.04521 6.16108 6.26783 6.41544 6.69424 6.94213 6.97689 7.01477 7.09253 7.10608 7.27410 7.36042 7.58519 7.67331 8.01769 8.06129 8.16658 8.35501 8.83346 9.49052 10.96119 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.036285 B = 0.002094 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.482723 B =13367.243271 C =13854.824155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.095 3.905 4 C -0.176 4.176 5 C -0.107 4.107 6 C 0.095 3.905 7 C -0.114 4.114 8 C -0.115 4.115 9 C -0.065 4.065 10 C -0.121 4.121 11 H 0.122 0.878 12 C 0.463 3.537 13 O -0.512 6.512 14 O -0.345 6.345 15 C 0.084 3.916 16 C 0.069 3.931 17 C -0.130 4.130 18 C -0.130 4.130 19 C -0.512 4.512 20 H 0.057 0.943 21 C 0.068 3.932 22 N -0.881 5.881 23 Si 0.895 3.105 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.283 1.283 27 C 0.074 3.926 28 O -0.307 6.307 29 H 0.054 0.946 30 H 0.098 0.902 31 H 0.054 0.946 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.016 0.984 40 H 0.084 0.916 41 H 0.023 0.977 42 H 0.022 0.978 43 H 0.084 0.916 44 H 0.017 0.983 45 H 0.261 0.739 46 H 0.071 0.929 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.280 -12.170 -1.324 25.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.050 3.950 4 C -0.194 4.194 5 C -0.125 4.125 6 C 0.050 3.950 7 C -0.115 4.115 8 C -0.133 4.133 9 C -0.102 4.102 10 C -0.140 4.140 11 H 0.140 0.860 12 C 0.305 3.695 13 O -0.401 6.401 14 O -0.261 6.261 15 C 0.011 3.989 16 C 0.069 3.931 17 C -0.187 4.187 18 C -0.187 4.187 19 C -0.550 4.550 20 H 0.075 0.925 21 C -0.134 4.134 22 N -0.519 5.519 23 Si 0.723 3.277 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.210 1.210 27 C -0.001 4.001 28 O -0.221 6.221 29 H 0.073 0.927 30 H 0.117 0.883 31 H 0.073 0.927 32 H 0.151 0.849 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.035 0.965 40 H 0.103 0.897 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.103 0.897 44 H 0.036 0.964 45 H 0.071 0.929 46 H 0.090 0.910 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -22.001 -12.229 -1.362 25.208 hybrid contribution 1.085 -0.081 -0.251 1.117 sum -20.916 -12.310 -1.613 24.323 Atomic orbital electron populations 1.23034 0.78551 1.03861 1.01279 1.86077 1.21190 1.26706 1.89301 1.18782 0.92107 0.84239 0.99858 1.21008 0.99995 0.91457 1.06962 1.20359 0.91454 0.98066 1.02651 1.18639 0.91906 0.84077 1.00344 1.19582 0.95482 0.92026 1.04393 1.20091 0.91371 0.97522 1.04337 1.20400 0.89781 0.95604 1.04365 1.21670 0.89904 0.98028 1.04409 0.86000 1.22991 0.89815 0.81464 0.75213 1.90642 1.68125 1.40570 1.40752 1.86516 1.28090 1.35806 1.75662 1.23735 0.73271 1.02023 0.99838 1.18267 0.94308 0.87004 0.93538 1.21774 0.96099 1.03251 0.97598 1.21774 0.96790 1.03149 0.97035 1.20961 0.92285 0.99594 1.42138 0.92453 1.24862 0.98358 0.95468 0.94716 1.69838 1.35533 1.03582 1.42993 0.86485 0.85062 0.78102 0.78045 1.19780 1.20952 1.20951 1.22964 0.78180 1.00560 0.98414 1.86073 1.25880 1.25944 1.84182 0.92726 0.88334 0.92699 0.84895 0.84721 0.84735 0.88678 0.88801 0.92413 0.92391 0.96458 0.89684 0.95807 0.95833 0.89697 0.96423 0.92925 0.91029 0.85427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -3.04 10.50 -19.70 -0.21 -3.25 16 3 C 0.09 0.97 6.68 -39.30 -0.26 0.71 16 4 C -0.18 -1.58 9.03 -39.51 -0.36 -1.94 16 5 C -0.11 -1.07 9.93 -39.36 -0.39 -1.46 16 6 C 0.10 1.12 6.47 -39.21 -0.25 0.86 16 7 C -0.11 -1.30 5.75 -104.44 -0.60 -1.90 16 8 C -0.11 -1.23 9.60 -39.38 -0.38 -1.61 16 9 C -0.06 -0.75 4.65 -27.81 -0.13 -0.88 16 10 C -0.12 -1.52 2.86 -91.52 -0.26 -1.78 16 11 H 0.12 1.43 8.14 -51.93 -0.42 1.01 16 12 C 0.46 7.63 7.26 36.00 0.26 7.89 16 13 O -0.51 -9.62 15.55 -18.75 -0.29 -9.92 16 14 O -0.35 -6.48 8.74 -39.24 -0.34 -6.82 16 15 C 0.08 1.80 4.26 37.16 0.16 1.95 16 16 C 0.07 1.65 0.58 -155.66 -0.09 1.56 16 17 C -0.13 -3.02 8.11 37.16 0.30 -2.72 16 18 C -0.13 -3.06 8.11 37.16 0.30 -2.76 16 19 C -0.51 -13.44 8.01 -34.44 -0.28 -13.72 16 20 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 21 C 0.07 1.78 5.15 -17.82 -0.09 1.69 16 22 N -0.88 -23.62 9.35 55.43 0.52 -23.10 16 23 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 24 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 C 0.07 0.88 6.28 37.37 0.23 1.11 16 28 O -0.31 -3.77 10.27 -19.60 -0.20 -3.97 16 29 H 0.05 0.24 7.66 -51.93 -0.40 -0.15 16 30 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.25 7.66 -51.93 -0.40 -0.15 16 32 H 0.13 0.84 6.31 -52.49 -0.33 0.51 16 33 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 34 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 35 H 0.09 1.15 7.71 -51.93 -0.40 0.75 16 36 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 1.25 8.13 -51.93 -0.42 0.83 16 38 H 0.06 1.25 8.13 -51.93 -0.42 0.83 16 39 H 0.02 0.35 7.68 -51.93 -0.40 -0.05 16 40 H 0.08 2.17 6.07 -51.93 -0.32 1.85 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 44 H 0.02 0.37 7.68 -51.92 -0.40 -0.03 16 45 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 46 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.13 1.47 8.05 -51.93 -0.42 1.05 16 LS Contribution 380.00 15.07 5.73 5.73 Total: -1.00 -29.40 380.00 -7.80 -37.20 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -7.14 Total: 0.37 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: -0.84 Total: -11.85 kcal Atomic # 7 Polarization: -23.62 SS G_CDS: 0.52 Total: -23.10 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -1.04 Total: -23.96 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.40 -7.80 -37.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184784235.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.331 kcal (2) G-P(sol) polarization free energy of solvation -29.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds