Wall clock time and date at job start Tue Mar 31 2020 17:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35987 * 116.99771 * 2 1 4 4 C 1.38723 * 120.06628 * 0.03345 * 3 2 1 5 5 C 1.37950 * 119.89453 * 179.66357 * 4 3 2 6 6 C 1.39120 * 120.29407 * 0.50465 * 5 4 3 7 7 C 1.38354 * 119.78560 * 359.63279 * 6 5 4 8 8 C 1.38502 * 119.87856 * 0.02949 * 7 6 5 9 9 C 1.50783 * 121.40908 * 179.97438 * 7 6 5 10 10 C 1.53072 * 109.68783 * 17.76127 * 9 7 6 11 11 H 1.09004 * 109.69827 * 71.47123 * 10 9 7 12 12 C 1.50698 * 109.70064 * 192.06874 * 10 9 7 13 13 O 1.20825 * 120.00142 * 358.83090 * 12 10 9 14 14 O 1.34225 * 120.00073 * 178.82976 * 12 10 9 15 15 C 1.45201 * 117.00114 * 180.02562 * 14 12 10 16 16 C 1.52998 * 109.47360 * 180.02562 * 15 14 12 17 17 C 1.53005 * 109.46965 * 300.00025 * 16 15 14 18 18 C 1.53000 * 109.47488 * 59.99842 * 16 15 14 19 19 C 1.50700 * 109.47327 * 180.02562 * 16 15 14 20 20 H 1.07997 * 120.00094 * 359.97438 * 19 16 15 21 21 C 1.37875 * 119.99894 * 179.97438 * 19 16 15 22 22 N 1.31518 * 120.00204 * 0.02562 * 21 19 16 23 23 Si 1.86802 * 119.99951 * 179.97438 * 21 19 16 24 24 H 1.48501 * 109.46990 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47157 * 120.00408 * 23 21 19 26 26 H 1.48504 * 109.47108 * 240.00393 * 23 21 19 27 27 C 1.53412 * 108.28981 * 311.76973 * 10 9 7 28 28 O 1.35955 * 118.43090 * 179.90442 * 6 5 4 29 29 H 1.08994 * 109.47729 * 59.99133 * 1 2 3 30 30 H 1.09004 * 109.47076 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47155 * 299.99258 * 1 2 3 32 32 H 1.07998 * 120.05283 * 359.88012 * 4 3 2 33 33 H 1.07999 * 119.84986 * 180.23218 * 5 4 3 34 34 H 1.08002 * 119.85754 * 180.14409 * 8 7 6 35 35 H 1.08997 * 109.43481 * 257.69589 * 9 7 6 36 36 H 1.09000 * 109.43426 * 137.82524 * 9 7 6 37 37 H 1.09004 * 109.47210 * 299.99905 * 15 14 12 38 38 H 1.08998 * 109.47466 * 60.00214 * 15 14 12 39 39 H 1.08999 * 109.46798 * 59.99785 * 17 16 15 40 40 H 1.08997 * 109.47370 * 179.97438 * 17 16 15 41 41 H 1.08997 * 109.47034 * 300.00334 * 17 16 15 42 42 H 1.08996 * 109.46847 * 59.99662 * 18 16 15 43 43 H 1.08997 * 109.47447 * 180.02562 * 18 16 15 44 44 H 1.09007 * 109.47023 * 300.00437 * 18 16 15 45 45 H 0.97001 * 119.99750 * 179.97438 * 22 21 19 46 46 H 1.09001 * 109.68302 * 305.03682 * 27 10 9 47 47 H 1.08999 * 109.71377 * 184.49432 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2921 2.3760 0.0007 5 6 1.9220 3.6032 0.0077 6 6 3.3111 3.6791 0.0035 7 6 4.0628 2.5176 0.0000 8 6 3.4295 1.2859 0.0000 9 6 5.5701 2.5572 -0.0052 10 6 6.0512 3.9424 0.4339 11 1 5.8680 4.0739 1.5004 12 6 7.5245 4.0822 0.1498 13 8 8.1366 3.1598 -0.3342 14 8 8.1567 5.2315 0.4343 15 6 9.5758 5.2952 0.1335 16 6 10.1187 6.6714 0.5238 17 6 9.3807 7.7537 -0.2668 18 6 9.9042 6.8983 2.0216 19 6 11.5914 6.7377 0.2110 20 1 12.0904 5.8836 -0.2224 21 6 12.3017 7.8888 0.4782 22 7 11.6942 8.9287 1.0064 23 14 14.1274 7.9707 0.0911 24 1 14.5681 6.6784 -0.4928 25 1 14.3785 9.0642 -0.8817 26 1 14.8867 8.2349 1.3397 27 6 5.2691 4.9974 -0.3591 28 8 3.8922 4.9082 0.0087 29 1 -0.3634 0.5139 -0.8898 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 0.2134 2.3216 -0.0007 33 1 1.3340 4.5092 0.0121 34 1 4.0167 0.3794 -0.0005 35 1 5.9349 2.3486 -1.0109 36 1 5.9550 1.8046 0.6830 37 1 10.1017 4.5244 0.6970 38 1 9.7287 5.1333 -0.9335 39 1 8.3154 7.7059 -0.0409 40 1 9.7671 8.7341 0.0116 41 1 9.5335 7.5921 -1.3338 42 1 10.4299 6.1272 2.5847 43 1 10.2906 7.8788 2.2996 44 1 8.8389 6.8504 2.2474 45 1 12.1941 9.7384 1.1947 46 1 5.3763 4.8079 -1.4271 47 1 5.6489 5.9913 -0.1227 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184784235.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:01 Heat of formation + Delta-G solvation = -160.716533 kcal Electronic energy + Delta-G solvation = -28647.977981 eV Core-core repulsion = 24567.688215 eV Total energy + Delta-G solvation = -4080.289766 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.21346 -41.28760 -40.15747 -38.40899 -37.41841 -36.66337 -35.39110 -33.28000 -31.96860 -30.93623 -28.15649 -27.69748 -27.55706 -27.20303 -26.71059 -25.31406 -23.69885 -22.44017 -20.91756 -20.71273 -19.12449 -18.91762 -18.43601 -18.02533 -17.72480 -17.34293 -17.22522 -16.66980 -16.55359 -16.10114 -15.62736 -15.50482 -15.19691 -14.89488 -14.61282 -14.51136 -14.33547 -14.20417 -14.09760 -13.81725 -13.54534 -13.30793 -13.13772 -12.86471 -12.84258 -12.68533 -12.59584 -12.33197 -12.20125 -12.14168 -12.09379 -11.79022 -11.72667 -11.50138 -11.31161 -11.27552 -11.15973 -10.72132 -10.40293 -9.89732 -8.75045 -8.04576 -6.22318 0.18777 0.40846 1.06867 1.41713 1.44714 1.53449 1.62958 2.24014 2.41463 2.45273 2.67238 3.18967 3.29067 3.42806 3.59903 3.75834 3.83279 3.94972 4.08120 4.23938 4.27327 4.27603 4.35142 4.43678 4.45401 4.51244 4.58513 4.63435 4.75885 4.78241 4.84414 4.86465 4.90462 4.99351 5.06335 5.20393 5.24479 5.30200 5.33456 5.37631 5.51624 5.57232 5.65277 5.66056 6.09479 6.18934 6.27658 6.37631 6.50931 6.67058 6.83215 7.45689 8.94973 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.036285 B = 0.002094 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.482723 B =13367.243271 C =13854.824155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.336 6.336 3 C 0.091 3.909 4 C -0.169 4.169 5 C -0.108 4.108 6 C 0.073 3.927 7 C -0.120 4.120 8 C -0.128 4.128 9 C -0.060 4.060 10 C -0.110 4.110 11 H 0.135 0.865 12 C 0.466 3.534 13 O -0.535 6.535 14 O -0.347 6.347 15 C 0.096 3.904 16 C 0.059 3.941 17 C -0.119 4.119 18 C -0.119 4.119 19 C -0.531 4.531 20 H 0.049 0.951 21 C 0.027 3.973 22 N -0.898 5.898 23 Si 0.951 3.049 24 H -0.273 1.273 25 H -0.280 1.280 26 H -0.281 1.281 27 C 0.076 3.924 28 O -0.312 6.312 29 H 0.066 0.934 30 H 0.116 0.884 31 H 0.066 0.934 32 H 0.162 0.838 33 H 0.152 0.848 34 H 0.139 0.861 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.036 0.964 40 H 0.062 0.938 41 H 0.021 0.979 42 H 0.019 0.981 43 H 0.062 0.938 44 H 0.034 0.966 45 H 0.262 0.738 46 H 0.075 0.925 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.193 -12.785 -1.339 27.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.251 6.251 3 C 0.046 3.954 4 C -0.187 4.187 5 C -0.127 4.127 6 C 0.028 3.972 7 C -0.121 4.121 8 C -0.147 4.147 9 C -0.097 4.097 10 C -0.129 4.129 11 H 0.152 0.848 12 C 0.310 3.690 13 O -0.425 6.425 14 O -0.263 6.263 15 C 0.023 3.977 16 C 0.059 3.941 17 C -0.177 4.177 18 C -0.177 4.177 19 C -0.569 4.569 20 H 0.067 0.933 21 C -0.173 4.173 22 N -0.537 5.537 23 Si 0.777 3.223 24 H -0.198 1.198 25 H -0.206 1.206 26 H -0.207 1.207 27 C 0.001 3.999 28 O -0.227 6.227 29 H 0.084 0.916 30 H 0.134 0.866 31 H 0.085 0.915 32 H 0.180 0.820 33 H 0.169 0.831 34 H 0.156 0.844 35 H 0.106 0.894 36 H 0.116 0.884 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.055 0.945 40 H 0.081 0.919 41 H 0.040 0.960 42 H 0.038 0.962 43 H 0.081 0.919 44 H 0.053 0.947 45 H 0.071 0.929 46 H 0.093 0.907 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -23.938 -12.855 -1.376 27.206 hybrid contribution 1.539 0.015 -0.245 1.558 sum -22.399 -12.840 -1.622 25.869 Atomic orbital electron populations 1.23349 0.76426 1.05544 1.02384 1.86063 1.23453 1.26455 1.89123 1.18936 0.92120 0.85050 0.99319 1.21313 1.01419 0.90539 1.05462 1.20637 0.90939 0.99199 1.01878 1.18897 0.92748 0.83824 1.01716 1.19519 0.94996 0.92376 1.05199 1.20216 0.92144 0.97477 1.04852 1.20344 0.90340 0.94986 1.04002 1.21700 0.86797 0.99095 1.05325 0.84769 1.23679 0.90994 0.80247 0.74061 1.90635 1.68965 1.41128 1.41792 1.86503 1.26582 1.37165 1.76036 1.23295 0.74877 1.00303 0.99234 1.18289 0.93565 0.88482 0.93748 1.21625 0.97060 1.01721 0.97286 1.21628 0.97638 1.01604 0.96842 1.21220 0.93821 0.99501 1.42408 0.93279 1.25501 1.01801 0.95281 0.94708 1.69946 1.36651 1.03802 1.43259 0.85617 0.80907 0.77928 0.77814 1.19758 1.20606 1.20665 1.22949 0.78216 1.00281 0.98469 1.86064 1.25651 1.26431 1.84506 0.91561 0.86576 0.91534 0.82018 0.83075 0.84363 0.89434 0.88438 0.93169 0.92917 0.94525 0.91948 0.96011 0.96204 0.91894 0.94721 0.92872 0.90660 0.85123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.34 -5.80 10.50 -93.40 -0.98 -6.78 16 3 C 0.09 1.70 6.68 22.45 0.15 1.85 16 4 C -0.17 -2.61 9.03 22.32 0.20 -2.41 16 5 C -0.11 -1.93 9.93 22.41 0.22 -1.71 16 6 C 0.07 1.60 6.47 22.51 0.15 1.75 16 7 C -0.12 -2.63 5.75 -19.75 -0.11 -2.74 16 8 C -0.13 -2.65 9.60 22.40 0.22 -2.43 16 9 C -0.06 -1.35 4.65 29.90 0.14 -1.21 16 10 C -0.11 -2.67 2.86 -11.38 -0.03 -2.70 16 11 H 0.13 2.96 8.14 -2.38 -0.02 2.94 16 12 C 0.47 15.08 7.26 71.24 0.52 15.60 16 13 O -0.54 -20.04 15.55 21.97 0.34 -19.70 16 14 O -0.35 -12.77 8.74 -51.37 -0.45 -13.22 16 15 C 0.10 4.12 4.26 71.98 0.31 4.42 16 16 C 0.06 2.84 0.58 -52.93 -0.03 2.81 16 17 C -0.12 -5.53 8.11 71.98 0.58 -4.95 16 18 C -0.12 -5.61 8.11 71.98 0.58 -5.03 16 19 C -0.53 -28.11 8.01 25.60 0.21 -27.91 16 20 H 0.05 2.61 7.74 -2.91 -0.02 2.59 16 21 C 0.03 1.43 5.15 84.65 0.44 1.87 16 22 N -0.90 -48.37 9.35 21.45 0.20 -48.17 16 23 Si 0.95 42.35 29.54 68.60 2.03 44.38 16 24 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 25 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 26 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 27 C 0.08 1.72 6.28 72.12 0.45 2.17 16 28 O -0.31 -7.25 10.27 -93.04 -0.96 -8.21 16 29 H 0.07 0.39 7.66 -2.39 -0.02 0.37 16 30 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.07 0.39 7.66 -2.39 -0.02 0.38 16 32 H 0.16 1.47 6.31 -2.91 -0.02 1.45 16 33 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 34 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 35 H 0.09 2.10 7.71 -2.39 -0.02 2.08 16 36 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.05 2.20 8.13 -2.38 -0.02 2.18 16 38 H 0.05 2.28 8.13 -2.39 -0.02 2.26 16 39 H 0.04 1.50 7.68 -2.39 -0.02 1.49 16 40 H 0.06 3.19 6.07 -2.39 -0.01 3.17 16 41 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.06 3.24 6.07 -2.39 -0.01 3.23 16 44 H 0.03 1.46 7.68 -2.38 -0.02 1.44 16 45 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 46 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.13 2.84 8.05 -2.39 -0.02 2.82 16 Total: -1.00 -62.03 380.00 6.25 -55.79 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 0.97 Total: 15.28 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: 5.09 Total: -19.37 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: 0.20 Total: -48.17 kcal Atomic # 8 Polarization: -45.86 SS G_CDS: -2.04 Total: -47.90 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -62.03 6.25 -55.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184784235.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.931 kcal (2) G-P(sol) polarization free energy of solvation -62.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds