Wall clock time and date at job start Tue Mar 31 2020 17:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35983 * 116.99979 * 2 1 4 4 C 1.38730 * 120.06645 * 0.02562 * 3 2 1 5 5 C 1.37943 * 119.89537 * 180.10381 * 4 3 2 6 6 C 1.39126 * 120.29979 * 0.02562 * 5 4 3 7 7 C 1.38349 * 119.78379 * 359.83565 * 6 5 4 8 8 C 1.38505 * 119.87867 * 0.24127 * 7 6 5 9 9 C 1.50774 * 121.41173 * 180.48925 * 7 6 5 10 10 C 1.53067 * 109.69060 * 342.12559 * 9 7 6 11 11 H 1.08996 * 109.73819 * 288.52085 * 10 9 7 12 12 C 1.50700 * 109.70205 * 167.93830 * 10 9 7 13 13 O 1.20833 * 119.99668 * 1.16104 * 12 10 9 14 14 O 1.34224 * 120.00436 * 181.16612 * 12 10 9 15 15 C 1.45200 * 117.00463 * 179.97438 * 14 12 10 16 16 C 1.53000 * 109.47468 * 179.97438 * 15 14 12 17 17 C 1.53004 * 109.46856 * 59.99970 * 16 15 14 18 18 C 1.53001 * 109.47197 * 300.00199 * 16 15 14 19 19 C 1.50695 * 109.46975 * 179.97438 * 16 15 14 20 20 H 1.07999 * 120.00218 * 4.70603 * 19 16 15 21 21 C 1.37883 * 119.99739 * 184.69537 * 19 16 15 22 22 N 1.31518 * 119.99780 * 159.95287 * 21 19 16 23 23 Si 1.86798 * 120.00242 * 339.95649 * 21 19 16 24 24 H 1.48491 * 109.46917 * 275.38338 * 23 21 19 25 25 H 1.48508 * 109.47050 * 35.38177 * 23 21 19 26 26 H 1.48499 * 109.47139 * 155.37987 * 23 21 19 27 27 C 1.53410 * 108.29165 * 48.23788 * 10 9 7 28 28 O 1.35946 * 118.43943 * 179.78435 * 6 5 4 29 29 H 1.08992 * 109.47365 * 299.99554 * 1 2 3 30 30 H 1.09001 * 109.47252 * 60.00244 * 1 2 3 31 31 H 1.08999 * 109.47129 * 179.97438 * 1 2 3 32 32 H 1.07993 * 120.04994 * 0.12348 * 4 3 2 33 33 H 1.08010 * 119.84974 * 179.97438 * 5 4 3 34 34 H 1.08003 * 119.86154 * 179.84409 * 8 7 6 35 35 H 1.08996 * 109.43699 * 222.05909 * 9 7 6 36 36 H 1.08997 * 109.43599 * 102.19148 * 9 7 6 37 37 H 1.09001 * 109.46610 * 59.99914 * 15 14 12 38 38 H 1.08997 * 109.46800 * 300.00010 * 15 14 12 39 39 H 1.08995 * 109.46969 * 171.26897 * 17 16 15 40 40 H 1.08997 * 109.47411 * 291.27140 * 17 16 15 41 41 H 1.09003 * 109.46832 * 51.27069 * 17 16 15 42 42 H 1.08993 * 109.47108 * 300.00116 * 18 16 15 43 43 H 1.09006 * 109.47165 * 59.99865 * 18 16 15 44 44 H 1.09001 * 109.46983 * 179.97438 * 18 16 15 45 45 H 0.96999 * 120.00097 * 180.02562 * 22 21 19 46 46 H 1.09002 * 109.68695 * 54.99476 * 27 10 9 47 47 H 1.09002 * 109.68147 * 175.51334 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2921 2.3760 0.0005 5 6 1.9220 3.6032 -0.0016 6 6 3.3112 3.6791 -0.0049 7 6 4.0629 2.5177 -0.0025 8 6 3.4296 1.2859 -0.0020 9 6 5.5701 2.5572 0.0051 10 6 6.0519 3.9424 -0.4332 11 1 5.8710 4.0746 -1.4999 12 6 7.5249 4.0820 -0.1468 13 8 8.1361 3.1594 0.3381 14 8 8.1577 5.2313 -0.4303 15 6 9.5764 5.2948 -0.1273 16 6 10.1200 6.6709 -0.5168 17 6 9.3809 7.7533 0.2727 18 6 9.9078 6.8978 -2.0149 19 6 11.5922 6.7369 -0.2018 20 1 12.1066 5.8595 0.1614 21 6 12.2825 7.9175 -0.3775 22 7 13.4262 8.1091 0.2430 23 14 11.5932 9.2449 -1.4966 24 1 11.9866 8.9622 -2.9002 25 1 10.1120 9.2612 -1.3912 26 1 12.1330 10.5665 -1.0877 27 6 5.2688 4.9974 0.3587 28 8 3.8924 4.9081 -0.0115 29 1 -0.3633 0.5137 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2135 2.3216 0.0030 33 1 1.3340 4.5092 -0.0016 34 1 4.0167 0.3794 -0.0027 35 1 5.9561 1.8047 -0.6824 36 1 5.9333 2.3485 1.0113 37 1 10.1029 4.5239 -0.6901 38 1 9.7275 5.1328 0.9399 39 1 9.8682 8.7153 0.1141 40 1 8.3470 7.8093 -0.0678 41 1 9.4011 7.5064 1.3342 42 1 10.4342 6.1267 -2.5773 43 1 8.8428 6.8502 -2.2424 44 1 10.2947 7.8784 -2.2923 45 1 13.9116 8.9398 0.1197 46 1 5.3748 4.8082 1.4270 47 1 5.6495 5.9911 0.1224 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184784252.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:06 Heat of formation + Delta-G solvation = -127.223879 kcal Electronic energy + Delta-G solvation = -28742.781386 eV Core-core repulsion = 24663.943971 eV Total energy + Delta-G solvation = -4078.837416 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -41.29504 -40.20875 -39.37865 -37.04648 -36.69529 -35.16396 -34.46499 -31.80493 -31.17892 -30.24260 -27.59619 -26.67899 -26.28085 -25.88994 -25.03766 -24.30430 -22.96211 -21.40290 -19.92722 -19.19809 -18.24584 -18.08002 -17.42195 -17.13130 -16.12916 -16.10515 -16.01508 -15.90683 -15.38029 -15.19994 -14.74981 -14.65762 -14.19358 -13.75691 -13.56100 -13.38579 -13.33033 -13.13877 -13.05804 -12.87575 -12.45799 -12.28707 -12.15968 -11.96641 -11.90015 -11.71030 -11.37765 -11.33171 -10.91245 -10.66868 -10.51213 -10.41325 -10.33099 -10.12420 -10.10482 -9.79803 -9.21671 -9.16059 -8.69965 -8.41511 -8.01202 -6.21921 -4.16324 0.91016 1.15487 2.30948 2.75051 3.00851 3.10399 3.24911 3.34048 3.37860 3.41864 4.21565 4.29905 4.34201 4.43122 4.50002 4.64228 4.72343 4.76670 4.82849 4.90970 5.06755 5.08043 5.13061 5.21689 5.33280 5.37889 5.56591 5.63070 5.64428 5.73270 5.77069 5.85201 6.00170 6.09532 6.11278 6.21241 6.24729 6.50733 6.56802 6.65477 6.76850 6.80690 6.96225 6.97128 7.20880 7.22098 7.40523 7.67604 7.99126 8.37432 8.83316 9.44039 10.90571 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.033320 B = 0.002210 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.126764 B =12669.006741 C =13158.028704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.096 3.904 4 C -0.176 4.176 5 C -0.106 4.106 6 C 0.094 3.906 7 C -0.113 4.113 8 C -0.115 4.115 9 C -0.065 4.065 10 C -0.121 4.121 11 H 0.122 0.878 12 C 0.464 3.536 13 O -0.507 6.507 14 O -0.351 6.351 15 C 0.093 3.907 16 C 0.044 3.956 17 C -0.139 4.139 18 C -0.146 4.146 19 C -0.524 4.524 20 H 0.075 0.925 21 C 0.082 3.918 22 N -0.883 5.883 23 Si 0.874 3.126 24 H -0.283 1.283 25 H -0.243 1.243 26 H -0.302 1.302 27 C 0.074 3.926 28 O -0.307 6.307 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.099 0.901 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.054 0.946 40 H 0.032 0.968 41 H 0.044 0.956 42 H 0.047 0.953 43 H 0.038 0.962 44 H 0.042 0.958 45 H 0.266 0.734 46 H 0.072 0.928 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.662 -11.237 -1.065 28.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.051 3.949 4 C -0.194 4.194 5 C -0.125 4.125 6 C 0.049 3.951 7 C -0.114 4.114 8 C -0.133 4.133 9 C -0.102 4.102 10 C -0.140 4.140 11 H 0.140 0.860 12 C 0.306 3.694 13 O -0.396 6.396 14 O -0.267 6.267 15 C 0.020 3.980 16 C 0.044 3.956 17 C -0.197 4.197 18 C -0.203 4.203 19 C -0.562 4.562 20 H 0.093 0.907 21 C -0.122 4.122 22 N -0.518 5.518 23 Si 0.705 3.295 24 H -0.211 1.211 25 H -0.169 1.169 26 H -0.230 1.230 27 C -0.002 4.002 28 O -0.221 6.221 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.117 0.883 32 H 0.151 0.849 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.051 0.949 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.076 0.924 46 H 0.091 0.909 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -26.257 -11.378 -0.914 28.631 hybrid contribution -0.032 0.628 -0.598 0.868 sum -26.289 -10.749 -1.513 28.442 Atomic orbital electron populations 1.23037 0.78515 1.03900 1.01281 1.86079 1.21217 1.26678 1.89263 1.18792 0.92113 0.84257 0.99735 1.21013 1.00021 0.91453 1.06936 1.20364 0.91459 0.98070 1.02604 1.18627 0.91903 0.84034 1.00503 1.19570 0.95448 0.92027 1.04396 1.20099 0.91382 0.97536 1.04309 1.20402 0.89819 0.95522 1.04444 1.21677 0.89746 0.98153 1.04412 0.85983 1.22975 0.89796 0.81319 0.75286 1.90665 1.68083 1.40415 1.40389 1.86473 1.28029 1.36223 1.75958 1.23478 0.73272 1.00564 1.00644 1.18567 0.95921 0.88965 0.92192 1.22228 0.97885 0.99945 0.99611 1.22298 0.99002 1.00464 0.98552 1.20596 0.90611 0.98556 1.46388 0.90708 1.24885 0.94844 0.97577 0.94859 1.70010 1.16534 1.26143 1.39125 0.87489 0.80294 0.80426 0.81280 1.21069 1.16852 1.23007 1.22962 0.78282 1.00430 0.98487 1.86074 1.25869 1.26027 1.84145 0.92705 0.92700 0.88303 0.84875 0.84730 0.84696 0.88750 0.88602 0.91733 0.91500 0.92754 0.94899 0.93724 0.93350 0.94279 0.93961 0.92442 0.90946 0.85544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.93 10.50 -19.69 -0.21 -3.14 16 3 C 0.10 0.94 6.68 -39.29 -0.26 0.68 16 4 C -0.18 -1.51 9.03 -39.51 -0.36 -1.87 16 5 C -0.11 -1.01 9.93 -39.36 -0.39 -1.40 16 6 C 0.09 1.05 6.47 -39.21 -0.25 0.79 16 7 C -0.11 -1.23 5.75 -104.45 -0.60 -1.83 16 8 C -0.11 -1.18 9.60 -39.37 -0.38 -1.56 16 9 C -0.07 -0.71 4.65 -27.81 -0.13 -0.84 16 10 C -0.12 -1.40 2.86 -91.53 -0.26 -1.66 16 11 H 0.12 1.30 8.14 -51.93 -0.42 0.88 16 12 C 0.46 7.12 7.26 36.01 0.26 7.39 16 13 O -0.51 -9.09 15.55 -18.76 -0.29 -9.38 16 14 O -0.35 -6.03 8.90 -39.24 -0.35 -6.38 16 15 C 0.09 1.87 4.25 37.16 0.16 2.03 16 16 C 0.04 0.99 0.58 -155.66 -0.09 0.90 16 17 C -0.14 -2.94 7.55 37.16 0.28 -2.66 16 18 C -0.15 -3.07 7.66 37.16 0.28 -2.79 16 19 C -0.52 -14.08 8.60 -34.44 -0.30 -14.38 16 20 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 21 C 0.08 2.28 5.23 -17.82 -0.09 2.18 16 22 N -0.88 -26.11 13.96 55.43 0.77 -25.34 16 23 Si 0.87 20.92 22.98 -169.99 -3.91 17.01 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.24 -5.36 4.61 56.52 0.26 -5.10 16 26 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 27 C 0.07 0.80 6.28 37.37 0.23 1.04 16 28 O -0.31 -3.54 10.27 -19.57 -0.20 -3.75 16 29 H 0.05 0.23 7.66 -51.93 -0.40 -0.17 16 30 H 0.05 0.23 7.67 -51.93 -0.40 -0.17 16 31 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.13 0.79 6.31 -52.49 -0.33 0.46 16 33 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 34 H 0.14 1.24 8.06 -52.48 -0.42 0.82 16 35 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.10 1.09 7.71 -51.93 -0.40 0.69 16 37 H 0.06 1.32 8.13 -51.93 -0.42 0.90 16 38 H 0.07 1.38 8.13 -51.93 -0.42 0.96 16 39 H 0.05 1.20 4.03 -51.93 -0.21 0.99 16 40 H 0.03 0.61 7.93 -51.93 -0.41 0.19 16 41 H 0.04 0.91 8.13 -51.93 -0.42 0.49 16 42 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.04 0.72 7.68 -51.93 -0.40 0.33 16 44 H 0.04 0.92 2.61 -51.93 -0.14 0.79 16 45 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 46 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.13 1.30 8.05 -51.93 -0.42 0.89 16 LS Contribution 370.36 15.07 5.58 5.58 Total: -1.00 -31.24 370.36 -6.53 -37.76 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -7.02 Total: 0.46 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -0.90 Total: -12.84 kcal Atomic # 7 Polarization: -26.11 SS G_CDS: 0.77 Total: -25.34 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -1.05 Total: -22.64 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -3.91 Total: 17.01 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.24 -6.53 -37.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184784252.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.459 kcal (2) G-P(sol) polarization free energy of solvation -31.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds