Wall clock time and date at job start Tue Mar 31 2020 17:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35983 * 116.99979 * 2 1 4 4 C 1.38730 * 120.06645 * 0.02562 * 3 2 1 5 5 C 1.37943 * 119.89537 * 180.10381 * 4 3 2 6 6 C 1.39126 * 120.29979 * 0.02562 * 5 4 3 7 7 C 1.38349 * 119.78379 * 359.83565 * 6 5 4 8 8 C 1.38505 * 119.87867 * 0.24127 * 7 6 5 9 9 C 1.50774 * 121.41173 * 180.48925 * 7 6 5 10 10 C 1.53067 * 109.69060 * 342.12559 * 9 7 6 11 11 H 1.08996 * 109.73819 * 288.52085 * 10 9 7 12 12 C 1.50700 * 109.70205 * 167.93830 * 10 9 7 13 13 O 1.20833 * 119.99668 * 1.16104 * 12 10 9 14 14 O 1.34224 * 120.00436 * 181.16612 * 12 10 9 15 15 C 1.45200 * 117.00463 * 179.97438 * 14 12 10 16 16 C 1.53000 * 109.47468 * 179.97438 * 15 14 12 17 17 C 1.53004 * 109.46856 * 59.99970 * 16 15 14 18 18 C 1.53001 * 109.47197 * 300.00199 * 16 15 14 19 19 C 1.50695 * 109.46975 * 179.97438 * 16 15 14 20 20 H 1.07999 * 120.00218 * 4.70603 * 19 16 15 21 21 C 1.37883 * 119.99739 * 184.69537 * 19 16 15 22 22 N 1.31518 * 119.99780 * 159.95287 * 21 19 16 23 23 Si 1.86798 * 120.00242 * 339.95649 * 21 19 16 24 24 H 1.48491 * 109.46917 * 275.38338 * 23 21 19 25 25 H 1.48508 * 109.47050 * 35.38177 * 23 21 19 26 26 H 1.48499 * 109.47139 * 155.37987 * 23 21 19 27 27 C 1.53410 * 108.29165 * 48.23788 * 10 9 7 28 28 O 1.35946 * 118.43943 * 179.78435 * 6 5 4 29 29 H 1.08992 * 109.47365 * 299.99554 * 1 2 3 30 30 H 1.09001 * 109.47252 * 60.00244 * 1 2 3 31 31 H 1.08999 * 109.47129 * 179.97438 * 1 2 3 32 32 H 1.07993 * 120.04994 * 0.12348 * 4 3 2 33 33 H 1.08010 * 119.84974 * 179.97438 * 5 4 3 34 34 H 1.08003 * 119.86154 * 179.84409 * 8 7 6 35 35 H 1.08996 * 109.43699 * 222.05909 * 9 7 6 36 36 H 1.08997 * 109.43599 * 102.19148 * 9 7 6 37 37 H 1.09001 * 109.46610 * 59.99914 * 15 14 12 38 38 H 1.08997 * 109.46800 * 300.00010 * 15 14 12 39 39 H 1.08995 * 109.46969 * 171.26897 * 17 16 15 40 40 H 1.08997 * 109.47411 * 291.27140 * 17 16 15 41 41 H 1.09003 * 109.46832 * 51.27069 * 17 16 15 42 42 H 1.08993 * 109.47108 * 300.00116 * 18 16 15 43 43 H 1.09006 * 109.47165 * 59.99865 * 18 16 15 44 44 H 1.09001 * 109.46983 * 179.97438 * 18 16 15 45 45 H 0.96999 * 120.00097 * 180.02562 * 22 21 19 46 46 H 1.09002 * 109.68695 * 54.99476 * 27 10 9 47 47 H 1.09002 * 109.68147 * 175.51334 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2921 2.3760 0.0005 5 6 1.9220 3.6032 -0.0016 6 6 3.3112 3.6791 -0.0049 7 6 4.0629 2.5177 -0.0025 8 6 3.4296 1.2859 -0.0020 9 6 5.5701 2.5572 0.0051 10 6 6.0519 3.9424 -0.4332 11 1 5.8710 4.0746 -1.4999 12 6 7.5249 4.0820 -0.1468 13 8 8.1361 3.1594 0.3381 14 8 8.1577 5.2313 -0.4303 15 6 9.5764 5.2948 -0.1273 16 6 10.1200 6.6709 -0.5168 17 6 9.3809 7.7533 0.2727 18 6 9.9078 6.8978 -2.0149 19 6 11.5922 6.7369 -0.2018 20 1 12.1066 5.8595 0.1614 21 6 12.2825 7.9175 -0.3775 22 7 13.4262 8.1091 0.2430 23 14 11.5932 9.2449 -1.4966 24 1 11.9866 8.9622 -2.9002 25 1 10.1120 9.2612 -1.3912 26 1 12.1330 10.5665 -1.0877 27 6 5.2688 4.9974 0.3587 28 8 3.8924 4.9081 -0.0115 29 1 -0.3633 0.5137 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2135 2.3216 0.0030 33 1 1.3340 4.5092 -0.0016 34 1 4.0167 0.3794 -0.0027 35 1 5.9561 1.8047 -0.6824 36 1 5.9333 2.3485 1.0113 37 1 10.1029 4.5239 -0.6901 38 1 9.7275 5.1328 0.9399 39 1 9.8682 8.7153 0.1141 40 1 8.3470 7.8093 -0.0678 41 1 9.4011 7.5064 1.3342 42 1 10.4342 6.1267 -2.5773 43 1 8.8428 6.8502 -2.2424 44 1 10.2947 7.8784 -2.2923 45 1 13.9116 8.9398 0.1197 46 1 5.3748 4.8082 1.4270 47 1 5.6495 5.9911 0.1224 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184784252.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:05 Heat of formation + Delta-G solvation = -145.637041 kcal Electronic energy + Delta-G solvation = -28743.579841 eV Core-core repulsion = 24663.943971 eV Total energy + Delta-G solvation = -4079.635870 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.22143 -41.31230 -40.16301 -38.59596 -37.41498 -36.77366 -35.39140 -33.85141 -32.00076 -30.93661 -28.32695 -27.97110 -27.90140 -27.04475 -26.73639 -25.38656 -23.69823 -22.46158 -21.00040 -20.86407 -19.14231 -18.91369 -18.46315 -18.01346 -17.94004 -17.38729 -17.24801 -17.02575 -16.60254 -16.10137 -15.66077 -15.54637 -15.26758 -14.88625 -14.79876 -14.60544 -14.40699 -14.28493 -14.13392 -14.10924 -13.84335 -13.67534 -13.57454 -13.28223 -12.87437 -12.68621 -12.43703 -12.31012 -12.19038 -12.03576 -12.02309 -11.85593 -11.72554 -11.47366 -11.45466 -11.27071 -11.11596 -10.57165 -10.39201 -9.89624 -8.74921 -8.35434 -6.33478 0.18927 0.40922 1.06152 1.36856 1.39821 1.50045 1.55852 2.24533 2.33766 2.41691 2.67377 3.00046 3.28415 3.43035 3.58094 3.75813 3.82496 3.95617 4.05385 4.07980 4.15190 4.24571 4.36291 4.41857 4.43748 4.45024 4.52141 4.56718 4.65212 4.75728 4.79003 4.83217 4.84937 4.88429 4.90626 4.96181 4.99540 5.13697 5.18068 5.30561 5.34260 5.47304 5.48909 5.53792 5.67438 5.76085 6.25812 6.27987 6.51021 6.64304 6.68962 7.29872 8.80976 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.033320 B = 0.002210 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.126764 B =12669.006741 C =13158.028704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.337 6.337 3 C 0.090 3.910 4 C -0.170 4.170 5 C -0.108 4.108 6 C 0.074 3.926 7 C -0.119 4.119 8 C -0.129 4.129 9 C -0.062 4.062 10 C -0.109 4.109 11 H 0.138 0.862 12 C 0.468 3.532 13 O -0.535 6.535 14 O -0.344 6.344 15 C 0.105 3.895 16 C 0.039 3.961 17 C -0.138 4.138 18 C -0.144 4.144 19 C -0.528 4.528 20 H 0.031 0.969 21 C 0.027 3.973 22 N -0.934 5.934 23 Si 0.931 3.069 24 H -0.280 1.280 25 H -0.205 1.205 26 H -0.308 1.308 27 C 0.075 3.925 28 O -0.311 6.311 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.116 0.884 32 H 0.162 0.838 33 H 0.152 0.848 34 H 0.137 0.863 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.044 0.956 40 H 0.066 0.934 41 H 0.040 0.960 42 H 0.045 0.955 43 H 0.070 0.930 44 H 0.037 0.963 45 H 0.266 0.734 46 H 0.074 0.926 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.601 -10.740 -2.297 32.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.251 6.251 3 C 0.045 3.955 4 C -0.188 4.188 5 C -0.126 4.126 6 C 0.029 3.971 7 C -0.120 4.120 8 C -0.148 4.148 9 C -0.098 4.098 10 C -0.128 4.128 11 H 0.156 0.844 12 C 0.312 3.688 13 O -0.425 6.425 14 O -0.260 6.260 15 C 0.031 3.969 16 C 0.038 3.962 17 C -0.195 4.195 18 C -0.201 4.201 19 C -0.565 4.565 20 H 0.050 0.950 21 C -0.172 4.172 22 N -0.572 5.572 23 Si 0.759 3.241 24 H -0.207 1.207 25 H -0.128 1.128 26 H -0.237 1.237 27 C 0.000 4.000 28 O -0.226 6.226 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.134 0.866 32 H 0.179 0.821 33 H 0.170 0.830 34 H 0.155 0.845 35 H 0.115 0.885 36 H 0.104 0.896 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.084 0.916 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.089 0.911 44 H 0.055 0.945 45 H 0.075 0.925 46 H 0.092 0.908 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -30.243 -10.904 -2.151 32.221 hybrid contribution 1.118 0.272 -0.142 1.159 sum -29.125 -10.633 -2.293 31.090 Atomic orbital electron populations 1.23344 0.76433 1.05528 1.02378 1.86062 1.23447 1.26517 1.89122 1.18952 0.92144 0.85051 0.99329 1.21313 1.01407 0.90585 1.05497 1.20645 0.91017 0.99147 1.01826 1.18866 0.92690 0.83848 1.01684 1.19512 0.95013 0.92344 1.05152 1.20226 0.92131 0.97542 1.04908 1.20350 0.90313 0.95210 1.03974 1.21708 0.86591 0.98972 1.05527 0.84388 1.23684 0.90945 0.80153 0.74047 1.90666 1.68989 1.41185 1.41624 1.86450 1.26093 1.37286 1.76169 1.23012 0.75151 0.99131 0.99588 1.18520 0.93157 0.90696 0.93842 1.22170 0.99404 0.98516 0.99396 1.22236 1.01059 1.00032 0.96785 1.20870 0.93299 0.96969 1.45389 0.95026 1.25731 0.95153 1.00287 0.96055 1.70143 1.18610 1.27195 1.41289 0.86564 0.81919 0.76817 0.78825 1.20745 1.12817 1.23716 1.22995 0.78183 1.00433 0.98437 1.86069 1.25770 1.26310 1.84404 0.91568 0.91521 0.86622 0.82088 0.83030 0.84477 0.88492 0.89560 0.92788 0.92830 0.93738 0.91557 0.94047 0.93548 0.91128 0.94481 0.92455 0.90792 0.84577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 113.37 1.11 1.24 16 2 O -0.34 -5.61 10.50 -93.36 -0.98 -6.59 16 3 C 0.09 1.62 6.68 22.46 0.15 1.77 16 4 C -0.17 -2.46 9.03 22.32 0.20 -2.26 16 5 C -0.11 -1.78 9.93 22.41 0.22 -1.56 16 6 C 0.07 1.50 6.47 22.51 0.15 1.64 16 7 C -0.12 -2.44 5.75 -19.75 -0.11 -2.55 16 8 C -0.13 -2.55 9.60 22.40 0.22 -2.33 16 9 C -0.06 -1.29 4.65 29.89 0.14 -1.15 16 10 C -0.11 -2.34 2.86 -11.38 -0.03 -2.37 16 11 H 0.14 2.58 8.14 -2.39 -0.02 2.56 16 12 C 0.47 13.79 7.26 71.24 0.52 14.30 16 13 O -0.53 -19.11 15.55 21.94 0.34 -18.77 16 14 O -0.34 -11.16 8.90 -51.36 -0.46 -11.61 16 15 C 0.10 4.18 4.25 71.98 0.31 4.49 16 16 C 0.04 1.69 0.58 -52.93 -0.03 1.66 16 17 C -0.14 -5.48 7.55 71.98 0.54 -4.93 16 18 C -0.14 -5.66 7.66 71.98 0.55 -5.11 16 19 C -0.53 -29.01 8.60 25.60 0.22 -28.79 16 20 H 0.03 1.95 7.99 -2.91 -0.02 1.92 16 21 C 0.03 1.51 5.23 84.66 0.44 1.95 16 22 N -0.93 -57.18 13.96 21.45 0.30 -56.88 16 23 Si 0.93 42.49 22.98 68.60 1.58 44.07 16 24 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 25 H -0.20 -8.09 4.61 99.48 0.46 -7.63 16 26 H -0.31 -14.33 7.11 99.48 0.71 -13.63 16 27 C 0.07 1.46 6.28 72.12 0.45 1.92 16 28 O -0.31 -6.48 10.27 -92.94 -0.95 -7.43 16 29 H 0.07 0.36 7.66 -2.39 -0.02 0.34 16 30 H 0.07 0.35 7.67 -2.39 -0.02 0.34 16 31 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.16 1.33 6.31 -2.91 -0.02 1.31 16 33 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 34 H 0.14 2.50 8.06 -2.91 -0.02 2.47 16 35 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.09 1.96 7.71 -2.39 -0.02 1.94 16 37 H 0.05 2.25 8.13 -2.39 -0.02 2.23 16 38 H 0.05 2.25 8.13 -2.39 -0.02 2.23 16 39 H 0.04 1.84 4.03 -2.39 -0.01 1.83 16 40 H 0.07 2.19 7.93 -2.39 -0.02 2.17 16 41 H 0.04 1.64 8.13 -2.39 -0.02 1.62 16 42 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.07 2.32 7.68 -2.38 -0.02 2.30 16 44 H 0.04 1.49 2.61 -2.39 -0.01 1.48 16 45 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 46 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.14 2.39 8.05 -2.39 -0.02 2.37 16 Total: -1.00 -68.93 370.36 5.60 -63.33 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 0.73 Total: 15.97 kcal Atomic # 6 Polarization: -27.13 SS G_CDS: 5.04 Total: -22.09 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: 0.30 Total: -56.88 kcal Atomic # 8 Polarization: -42.35 SS G_CDS: -2.05 Total: -44.40 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 1.58 Total: 44.07 kcal Total: -68.93 5.60 -63.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184784252.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.305 kcal (2) G-P(sol) polarization free energy of solvation -68.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds