Wall clock time and date at job start Tue Mar 31 2020 17:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35898 * 117.00084 * 2 1 4 4 C 1.38796 * 120.07903 * 0.02562 * 3 2 1 5 5 C 1.37998 * 119.92368 * 179.89736 * 4 3 2 6 6 C 1.38562 * 120.39446 * 0.03079 * 5 4 3 7 7 C 1.38424 * 119.90967 * 0.12247 * 6 5 4 8 8 C 1.38451 * 120.08063 * 180.02562 * 3 2 1 9 9 O 1.35876 * 121.80983 * 179.51741 * 7 6 5 10 10 C 1.42820 * 117.84402 * 17.24655 * 9 7 6 11 11 C 1.53414 * 108.39870 * 310.81338 * 10 9 7 12 12 H 1.08996 * 109.69450 * 304.97028 * 11 10 9 13 13 C 1.50700 * 109.69296 * 184.41535 * 11 10 9 14 14 O 1.20823 * 119.99979 * 239.99538 * 13 11 10 15 15 O 1.34225 * 119.99997 * 60.00461 * 13 11 10 16 16 C 1.45200 * 117.00222 * 179.97438 * 15 13 11 17 17 C 1.52994 * 109.47371 * 180.02562 * 16 15 13 18 18 C 1.53008 * 109.46960 * 299.99715 * 17 16 15 19 19 C 1.52998 * 109.47676 * 59.99546 * 17 16 15 20 20 C 1.50701 * 109.47459 * 180.02562 * 17 16 15 21 21 H 1.07997 * 119.99728 * 359.97438 * 20 17 16 22 22 C 1.37877 * 120.00322 * 180.02562 * 20 17 16 23 23 N 1.31514 * 119.99956 * 359.97438 * 22 20 17 24 24 Si 1.86797 * 119.99938 * 180.02562 * 22 20 17 25 25 H 1.48495 * 109.47350 * 59.99597 * 24 22 20 26 26 H 1.48502 * 109.47113 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47086 * 299.99584 * 24 22 20 28 28 C 1.50792 * 118.70530 * 180.16860 * 6 5 4 29 29 H 1.09008 * 109.47253 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47364 * 299.99845 * 1 2 3 31 31 H 1.08999 * 109.47109 * 59.99892 * 1 2 3 32 32 H 1.07997 * 120.03456 * 359.86699 * 4 3 2 33 33 H 1.07998 * 119.80560 * 180.02562 * 5 4 3 34 34 H 1.08001 * 119.91479 * 0.02562 * 8 3 2 35 35 H 1.09002 * 109.68507 * 191.07591 * 10 9 7 36 36 H 1.09002 * 109.68405 * 70.55043 * 10 9 7 37 37 H 1.09004 * 109.47179 * 299.99942 * 16 15 13 38 38 H 1.08998 * 109.46916 * 59.99566 * 16 15 13 39 39 H 1.08999 * 109.46500 * 60.00512 * 18 17 16 40 40 H 1.09003 * 109.47081 * 179.97438 * 18 17 16 41 41 H 1.08998 * 109.46981 * 300.00472 * 18 17 16 42 42 H 1.09004 * 109.46696 * 60.00416 * 19 17 16 43 43 H 1.08993 * 109.47802 * 180.02562 * 19 17 16 44 44 H 1.08995 * 109.47262 * 300.00506 * 19 17 16 45 45 H 0.97004 * 119.99945 * 180.02562 * 23 22 20 46 46 H 1.09003 * 109.42963 * 77.73343 * 28 6 5 47 47 H 1.09000 * 109.43820 * 317.86960 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2916 2.3759 0.0005 5 6 1.9215 3.6038 0.0027 6 6 3.3049 3.6821 0.0037 7 6 4.0618 2.5231 -0.0001 8 6 3.4285 1.2852 -0.0005 9 8 5.4202 2.5549 -0.0090 10 6 6.0613 3.7766 0.3599 11 6 5.4141 4.9210 -0.4306 12 1 5.4597 4.7023 -1.4974 13 6 6.1405 6.2100 -0.1447 14 8 5.5466 7.1432 0.3414 15 8 7.4473 6.3215 -0.4304 16 6 8.0819 7.5922 -0.1289 17 6 9.5595 7.5300 -0.5207 18 6 10.2498 6.4154 0.2682 19 6 9.6784 7.2433 -2.0188 20 6 10.2184 8.8486 -0.2072 21 1 9.6408 9.6510 0.2275 22 6 11.5582 9.0311 -0.4764 23 7 12.2615 8.0543 -1.0063 24 14 12.3749 10.6654 -0.0872 25 1 12.2603 10.9421 1.3672 26 1 13.8091 10.6051 -0.4676 27 1 11.7048 11.7481 -0.8514 28 6 3.9533 5.0435 0.0099 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2130 2.3216 -0.0012 33 1 1.3327 4.5092 0.0035 34 1 4.0166 0.3794 -0.0014 35 1 7.1234 3.7204 0.1215 36 1 5.9335 3.9501 1.4284 37 1 7.5905 8.3863 -0.6912 38 1 7.9968 7.7966 0.9384 39 1 9.7734 5.4615 0.0418 40 1 11.3025 6.3708 -0.0113 41 1 10.1651 6.6196 1.3355 42 1 9.1867 8.0374 -2.5808 43 1 10.7311 7.1985 -2.2979 44 1 9.2021 6.2894 -2.2452 45 1 13.2042 8.1826 -1.1954 46 1 3.9116 5.4604 1.0162 47 1 3.4214 5.7017 -0.6770 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184811584.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:28 Heat of formation + Delta-G solvation = -146.904112 kcal Electronic energy + Delta-G solvation = -28632.972814 eV Core-core repulsion = 24553.281999 eV Total energy + Delta-G solvation = -4079.690815 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 5.11 seconds Orbital eigenvalues (eV) -41.25074 -40.13882 -39.36326 -36.79037 -36.77477 -34.92681 -34.28496 -31.34795 -30.80608 -30.49398 -27.77055 -26.04713 -25.78062 -25.65131 -25.22942 -24.08677 -22.95229 -21.33804 -19.80089 -18.91624 -18.83455 -17.69640 -17.11745 -16.68444 -16.13569 -15.93944 -15.88084 -15.82012 -15.35538 -15.18671 -14.80300 -14.55246 -14.22399 -13.76907 -13.51751 -13.33070 -13.16225 -12.88665 -12.83729 -12.69409 -12.23265 -12.00144 -11.69413 -11.55621 -11.46588 -11.22890 -11.17347 -10.98485 -10.83618 -10.78100 -10.75662 -10.44983 -10.27904 -10.11343 -9.95989 -9.46127 -9.35944 -8.80282 -8.74218 -8.40132 -8.24260 -6.04573 -4.16486 1.09081 1.12060 2.39743 2.61975 3.01244 3.27571 3.32353 3.33407 3.35960 3.51164 4.27230 4.35212 4.40214 4.49246 4.66305 4.67671 4.75618 4.77729 4.90373 4.92494 5.09110 5.18800 5.21773 5.28542 5.33818 5.45049 5.62927 5.71755 5.81885 5.92751 5.97919 6.01783 6.04155 6.17195 6.24494 6.41361 6.69502 6.94316 6.97478 7.02171 7.09397 7.10684 7.19978 7.35996 7.58660 7.67178 8.01922 8.05982 8.16590 8.35618 8.83039 9.49139 10.96525 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.037366 B = 0.002078 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.168905 B =13469.548213 C =13938.880480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.316 6.316 3 C 0.156 3.844 4 C -0.237 4.237 5 C -0.042 4.042 6 C -0.190 4.190 7 C 0.170 3.830 8 C -0.183 4.183 9 O -0.303 6.303 10 C 0.074 3.926 11 C -0.121 4.121 12 H 0.122 0.878 13 C 0.463 3.537 14 O -0.512 6.512 15 O -0.345 6.345 16 C 0.084 3.916 17 C 0.070 3.930 18 C -0.130 4.130 19 C -0.130 4.130 20 C -0.513 4.513 21 H 0.056 0.944 22 C 0.069 3.931 23 N -0.881 5.881 24 Si 0.896 3.104 25 H -0.277 1.277 26 H -0.286 1.286 27 H -0.277 1.277 28 C -0.058 4.058 29 H 0.100 0.900 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.139 0.861 35 H 0.130 0.870 36 H 0.074 0.926 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.016 0.984 40 H 0.084 0.916 41 H 0.023 0.977 42 H 0.022 0.978 43 H 0.084 0.916 44 H 0.017 0.983 45 H 0.262 0.738 46 H 0.090 0.910 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.077 -14.076 1.324 25.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.229 6.229 3 C 0.110 3.890 4 C -0.256 4.256 5 C -0.060 4.060 6 C -0.191 4.191 7 C 0.124 3.876 8 C -0.202 4.202 9 O -0.216 6.216 10 C -0.001 4.001 11 C -0.141 4.141 12 H 0.140 0.860 13 C 0.305 3.695 14 O -0.401 6.401 15 O -0.261 6.261 16 C 0.011 3.989 17 C 0.069 3.931 18 C -0.187 4.187 19 C -0.187 4.187 20 C -0.551 4.551 21 H 0.074 0.926 22 C -0.133 4.133 23 N -0.519 5.519 24 Si 0.724 3.276 25 H -0.203 1.203 26 H -0.212 1.212 27 H -0.203 1.203 28 C -0.095 4.095 29 H 0.118 0.882 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.157 0.843 35 H 0.147 0.853 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.035 0.965 40 H 0.103 0.897 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.103 0.897 44 H 0.036 0.964 45 H 0.072 0.928 46 H 0.108 0.892 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -20.781 -14.150 1.359 25.178 hybrid contribution 0.055 1.508 0.254 1.531 sum -20.726 -12.642 1.612 24.331 Atomic orbital electron populations 1.23074 0.78146 1.03980 1.01502 1.86059 1.21515 1.26774 1.88546 1.18523 0.91401 0.84200 0.94847 1.21081 1.00040 0.92065 1.12444 1.20647 0.92862 0.97375 0.95129 1.19718 0.94305 0.94037 1.11042 1.18305 0.82665 0.92368 0.94276 1.19575 0.91455 0.96891 1.12284 1.86070 1.15971 1.36273 1.83312 1.23021 0.97961 0.80515 0.98612 1.21681 0.95678 0.92373 1.04343 0.86033 1.23004 0.82182 0.89087 0.75213 1.90637 1.68200 1.40563 1.40714 1.86518 1.22202 1.41750 1.75620 1.23733 0.95566 0.79739 0.99818 1.18255 0.85453 0.95816 0.93527 1.21777 1.03783 0.95563 0.97604 1.21773 1.03429 0.96504 0.97042 1.20879 0.94548 0.97411 1.42307 0.92576 1.24856 0.97060 0.96737 0.94692 1.69815 1.08045 1.31303 1.42764 0.86596 0.78300 0.83897 0.78839 1.20252 1.21186 1.20258 1.20312 0.91917 0.93417 1.03897 0.88182 0.92536 0.92514 0.85285 0.85252 0.84269 0.85262 0.90796 0.92432 0.92401 0.96458 0.89684 0.95805 0.95846 0.89690 0.96424 0.92801 0.89194 0.89254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -3.00 10.50 -19.42 -0.20 -3.20 16 3 C 0.16 1.62 6.68 -39.30 -0.26 1.36 16 4 C -0.24 -2.14 9.04 -39.46 -0.36 -2.50 16 5 C -0.04 -0.40 9.66 -39.55 -0.38 -0.78 16 6 C -0.19 -2.12 5.75 -104.39 -0.60 -2.72 16 7 C 0.17 2.05 6.47 -39.21 -0.25 1.79 16 8 C -0.18 -2.09 9.87 -39.20 -0.39 -2.48 16 9 O -0.30 -3.80 10.27 -19.35 -0.20 -4.00 16 10 C 0.07 0.88 6.28 37.37 0.23 1.11 16 11 C -0.12 -1.53 2.86 -91.53 -0.26 -1.79 16 12 H 0.12 1.43 8.14 -51.93 -0.42 1.01 16 13 C 0.46 7.61 7.26 36.01 0.26 7.87 16 14 O -0.51 -9.59 15.55 -18.75 -0.29 -9.88 16 15 O -0.35 -6.47 8.73 -39.24 -0.34 -6.82 16 16 C 0.08 1.80 4.26 37.15 0.16 1.95 16 17 C 0.07 1.67 0.58 -155.66 -0.09 1.58 16 18 C -0.13 -3.03 8.11 37.16 0.30 -2.72 16 19 C -0.13 -3.06 8.11 37.16 0.30 -2.76 16 20 C -0.51 -13.48 8.01 -34.44 -0.28 -13.75 16 21 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 22 C 0.07 1.80 5.15 -17.82 -0.09 1.71 16 23 N -0.88 -23.61 9.35 55.43 0.52 -23.09 16 24 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 C -0.06 -0.67 4.65 -27.81 -0.13 -0.80 16 29 H 0.10 0.33 8.14 -51.92 -0.42 -0.09 16 30 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 31 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 32 H 0.13 0.84 6.31 -52.49 -0.33 0.51 16 33 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 34 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 35 H 0.13 1.49 8.05 -51.93 -0.42 1.07 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.06 1.25 8.13 -51.93 -0.42 0.83 16 38 H 0.06 1.24 8.13 -51.93 -0.42 0.82 16 39 H 0.02 0.35 7.68 -51.93 -0.40 -0.04 16 40 H 0.08 2.17 6.07 -51.93 -0.32 1.85 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 44 H 0.02 0.37 7.68 -51.93 -0.40 -0.03 16 45 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 46 H 0.09 1.07 7.71 -51.93 -0.40 0.67 16 47 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 379.99 15.07 5.73 5.73 Total: -1.00 -29.31 379.99 -7.80 -37.11 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -7.14 Total: 0.36 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -0.84 Total: -11.79 kcal Atomic # 7 Polarization: -23.61 SS G_CDS: 0.52 Total: -23.09 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -1.04 Total: -23.90 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.31 -7.80 -37.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184811584.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.793 kcal (2) G-P(sol) polarization free energy of solvation -29.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.12 seconds