Wall clock time and date at job start Tue Mar 31 2020 17:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35898 * 117.00084 * 2 1 4 4 C 1.38796 * 120.07903 * 0.02562 * 3 2 1 5 5 C 1.37998 * 119.92368 * 179.89736 * 4 3 2 6 6 C 1.38562 * 120.39446 * 0.03079 * 5 4 3 7 7 C 1.38424 * 119.90967 * 0.12247 * 6 5 4 8 8 C 1.38451 * 120.08063 * 180.02562 * 3 2 1 9 9 O 1.35876 * 121.80983 * 179.51741 * 7 6 5 10 10 C 1.42820 * 117.84402 * 17.24655 * 9 7 6 11 11 C 1.53414 * 108.39870 * 310.81338 * 10 9 7 12 12 H 1.08996 * 109.69450 * 304.97028 * 11 10 9 13 13 C 1.50700 * 109.69296 * 184.41535 * 11 10 9 14 14 O 1.20823 * 119.99979 * 239.99538 * 13 11 10 15 15 O 1.34225 * 119.99997 * 60.00461 * 13 11 10 16 16 C 1.45200 * 117.00222 * 179.97438 * 15 13 11 17 17 C 1.52994 * 109.47371 * 180.02562 * 16 15 13 18 18 C 1.53008 * 109.46960 * 299.99715 * 17 16 15 19 19 C 1.52998 * 109.47676 * 59.99546 * 17 16 15 20 20 C 1.50701 * 109.47459 * 180.02562 * 17 16 15 21 21 H 1.07997 * 119.99728 * 359.97438 * 20 17 16 22 22 C 1.37877 * 120.00322 * 180.02562 * 20 17 16 23 23 N 1.31514 * 119.99956 * 359.97438 * 22 20 17 24 24 Si 1.86797 * 119.99938 * 180.02562 * 22 20 17 25 25 H 1.48495 * 109.47350 * 59.99597 * 24 22 20 26 26 H 1.48502 * 109.47113 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47086 * 299.99584 * 24 22 20 28 28 C 1.50792 * 118.70530 * 180.16860 * 6 5 4 29 29 H 1.09008 * 109.47253 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47364 * 299.99845 * 1 2 3 31 31 H 1.08999 * 109.47109 * 59.99892 * 1 2 3 32 32 H 1.07997 * 120.03456 * 359.86699 * 4 3 2 33 33 H 1.07998 * 119.80560 * 180.02562 * 5 4 3 34 34 H 1.08001 * 119.91479 * 0.02562 * 8 3 2 35 35 H 1.09002 * 109.68507 * 191.07591 * 10 9 7 36 36 H 1.09002 * 109.68405 * 70.55043 * 10 9 7 37 37 H 1.09004 * 109.47179 * 299.99942 * 16 15 13 38 38 H 1.08998 * 109.46916 * 59.99566 * 16 15 13 39 39 H 1.08999 * 109.46500 * 60.00512 * 18 17 16 40 40 H 1.09003 * 109.47081 * 179.97438 * 18 17 16 41 41 H 1.08998 * 109.46981 * 300.00472 * 18 17 16 42 42 H 1.09004 * 109.46696 * 60.00416 * 19 17 16 43 43 H 1.08993 * 109.47802 * 180.02562 * 19 17 16 44 44 H 1.08995 * 109.47262 * 300.00506 * 19 17 16 45 45 H 0.97004 * 119.99945 * 180.02562 * 23 22 20 46 46 H 1.09003 * 109.42963 * 77.73343 * 28 6 5 47 47 H 1.09000 * 109.43820 * 317.86960 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2916 2.3759 0.0005 5 6 1.9215 3.6038 0.0027 6 6 3.3049 3.6821 0.0037 7 6 4.0618 2.5231 -0.0001 8 6 3.4285 1.2852 -0.0005 9 8 5.4202 2.5549 -0.0090 10 6 6.0613 3.7766 0.3599 11 6 5.4141 4.9210 -0.4306 12 1 5.4597 4.7023 -1.4974 13 6 6.1405 6.2100 -0.1447 14 8 5.5466 7.1432 0.3414 15 8 7.4473 6.3215 -0.4304 16 6 8.0819 7.5922 -0.1289 17 6 9.5595 7.5300 -0.5207 18 6 10.2498 6.4154 0.2682 19 6 9.6784 7.2433 -2.0188 20 6 10.2184 8.8486 -0.2072 21 1 9.6408 9.6510 0.2275 22 6 11.5582 9.0311 -0.4764 23 7 12.2615 8.0543 -1.0063 24 14 12.3749 10.6654 -0.0872 25 1 12.2603 10.9421 1.3672 26 1 13.8091 10.6051 -0.4676 27 1 11.7048 11.7481 -0.8514 28 6 3.9533 5.0435 0.0099 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2130 2.3216 -0.0012 33 1 1.3327 4.5092 0.0035 34 1 4.0166 0.3794 -0.0014 35 1 7.1234 3.7204 0.1215 36 1 5.9335 3.9501 1.4284 37 1 7.5905 8.3863 -0.6912 38 1 7.9968 7.7966 0.9384 39 1 9.7734 5.4615 0.0418 40 1 11.3025 6.3708 -0.0113 41 1 10.1651 6.6196 1.3355 42 1 9.1867 8.0374 -2.5808 43 1 10.7311 7.1985 -2.2979 44 1 9.2021 6.2894 -2.2452 45 1 13.2042 8.1826 -1.1954 46 1 3.9116 5.4604 1.0162 47 1 3.4214 5.7017 -0.6770 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184811584.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:11 Heat of formation + Delta-G solvation = -161.054980 kcal Electronic energy + Delta-G solvation = -28633.586441 eV Core-core repulsion = 24553.281999 eV Total energy + Delta-G solvation = -4080.304442 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 10.72 seconds Orbital eigenvalues (eV) -42.22858 -41.30225 -40.22497 -38.40282 -37.54606 -36.65583 -35.28458 -33.26566 -31.61571 -31.33752 -28.37176 -27.61482 -27.55711 -27.13527 -26.66529 -25.22312 -23.74597 -22.45534 -20.87641 -20.70475 -19.60055 -18.97206 -18.09726 -17.79512 -17.61204 -17.25598 -17.06255 -16.71013 -16.62496 -16.14996 -16.06154 -15.55089 -15.34291 -14.92238 -14.64341 -14.50283 -14.43274 -14.29910 -14.02090 -13.64653 -13.31165 -13.27182 -13.11613 -12.86606 -12.81762 -12.67462 -12.58123 -12.32106 -12.23063 -12.13858 -12.08548 -11.75869 -11.72386 -11.55336 -11.46166 -11.27300 -11.16850 -10.73359 -10.39360 -9.54449 -9.02304 -8.03843 -6.21865 0.31394 0.33149 1.07296 1.44782 1.44902 1.51545 1.62590 1.94116 2.45252 2.59550 2.72311 3.19562 3.29145 3.45117 3.60347 3.76737 3.94348 3.96414 4.12027 4.15091 4.27618 4.27728 4.35891 4.41659 4.44293 4.49770 4.56916 4.62712 4.73178 4.79362 4.86414 4.89454 4.92636 5.06333 5.14272 5.20380 5.24261 5.25498 5.36416 5.42331 5.48102 5.57192 5.65224 5.66022 6.09411 6.19009 6.27627 6.37725 6.42928 6.67714 6.83330 7.46013 8.95300 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.037366 B = 0.002078 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.168905 B =13469.548213 C =13938.880480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.333 6.333 3 C 0.152 3.848 4 C -0.231 4.231 5 C -0.041 4.041 6 C -0.199 4.199 7 C 0.151 3.849 8 C -0.201 4.201 9 O -0.313 6.313 10 C 0.076 3.924 11 C -0.112 4.112 12 H 0.133 0.867 13 C 0.467 3.533 14 O -0.534 6.534 15 O -0.348 6.348 16 C 0.097 3.903 17 C 0.060 3.940 18 C -0.119 4.119 19 C -0.119 4.119 20 C -0.533 4.533 21 H 0.050 0.950 22 C 0.027 3.973 23 N -0.898 5.898 24 Si 0.951 3.049 25 H -0.275 1.275 26 H -0.283 1.283 27 H -0.275 1.275 28 C -0.053 4.053 29 H 0.118 0.882 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.158 0.842 33 H 0.153 0.847 34 H 0.136 0.864 35 H 0.131 0.869 36 H 0.078 0.922 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.035 0.965 40 H 0.062 0.938 41 H 0.021 0.979 42 H 0.019 0.981 43 H 0.062 0.938 44 H 0.033 0.967 45 H 0.262 0.738 46 H 0.083 0.917 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.157 -14.467 1.359 27.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.247 6.247 3 C 0.106 3.894 4 C -0.250 4.250 5 C -0.059 4.059 6 C -0.200 4.200 7 C 0.106 3.894 8 C -0.220 4.220 9 O -0.226 6.226 10 C 0.001 3.999 11 C -0.131 4.131 12 H 0.151 0.849 13 C 0.310 3.690 14 O -0.424 6.424 15 O -0.264 6.264 16 C 0.023 3.977 17 C 0.059 3.941 18 C -0.177 4.177 19 C -0.177 4.177 20 C -0.571 4.571 21 H 0.068 0.932 22 C -0.173 4.173 23 N -0.536 5.536 24 Si 0.777 3.223 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.201 1.201 28 C -0.089 4.089 29 H 0.137 0.863 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.175 0.825 33 H 0.171 0.829 34 H 0.154 0.846 35 H 0.149 0.851 36 H 0.096 0.904 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.054 0.946 40 H 0.080 0.920 41 H 0.040 0.960 42 H 0.038 0.962 43 H 0.081 0.919 44 H 0.052 0.948 45 H 0.071 0.929 46 H 0.102 0.898 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -22.883 -14.557 1.394 27.156 hybrid contribution 0.566 1.528 0.242 1.647 sum -22.317 -13.029 1.636 25.894 Atomic orbital electron populations 1.23400 0.75949 1.05724 1.02595 1.86045 1.23828 1.26517 1.88315 1.18662 0.91220 0.85131 0.94369 1.21395 1.01438 0.91246 1.10904 1.20953 0.92320 0.98604 0.94022 1.19747 0.95089 0.93266 1.11908 1.18481 0.82448 0.93027 0.95490 1.19699 0.92364 0.96702 1.13256 1.86056 1.16605 1.36274 1.83683 1.23013 0.97991 0.80195 0.98747 1.21723 0.95951 0.90222 1.05186 0.84886 1.23678 0.81140 0.90060 0.74086 1.90629 1.68312 1.41759 1.41691 1.86506 1.23669 1.40226 1.76014 1.23287 0.94372 0.80779 0.99232 1.18281 0.86997 0.95074 0.93708 1.21629 1.02396 0.96387 0.97296 1.21627 1.01981 0.97223 0.96877 1.21164 0.95055 0.98379 1.42530 0.93215 1.25504 0.97596 0.99493 0.94687 1.69933 1.08091 1.32528 1.43085 0.85729 0.77449 0.80549 0.78569 1.20028 1.20809 1.20063 1.20272 0.91045 0.93927 1.03699 0.86331 0.91377 0.91355 0.82464 0.82895 0.84629 0.85072 0.90364 0.93109 0.92904 0.94593 0.91966 0.96019 0.96185 0.91911 0.94775 0.92869 0.89814 0.88411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.33 -5.80 10.50 -92.40 -0.97 -6.77 16 3 C 0.15 2.93 6.68 22.45 0.15 3.08 16 4 C -0.23 -3.55 9.04 22.35 0.20 -3.35 16 5 C -0.04 -0.68 9.66 22.29 0.22 -0.46 16 6 C -0.20 -4.14 5.75 -19.71 -0.11 -4.25 16 7 C 0.15 3.54 6.47 22.51 0.15 3.68 16 8 C -0.20 -4.51 9.87 22.52 0.22 -4.29 16 9 O -0.31 -7.70 10.27 -92.16 -0.95 -8.65 16 10 C 0.08 1.73 6.28 72.12 0.45 2.19 16 11 C -0.11 -2.68 2.86 -11.38 -0.03 -2.71 16 12 H 0.13 2.92 8.14 -2.39 -0.02 2.90 16 13 C 0.47 14.91 7.26 71.24 0.52 15.43 16 14 O -0.53 -19.63 15.55 21.97 0.34 -19.29 16 15 O -0.35 -12.78 8.73 -51.37 -0.45 -13.23 16 16 C 0.10 4.11 4.26 71.98 0.31 4.42 16 17 C 0.06 2.85 0.58 -52.93 -0.03 2.82 16 18 C -0.12 -5.56 8.11 71.98 0.58 -4.97 16 19 C -0.12 -5.62 8.11 71.98 0.58 -5.03 16 20 C -0.53 -28.14 8.01 25.60 0.21 -27.94 16 21 H 0.05 2.62 7.74 -2.91 -0.02 2.60 16 22 C 0.03 1.44 5.15 84.65 0.44 1.88 16 23 N -0.90 -48.44 9.35 21.45 0.20 -48.24 16 24 Si 0.95 42.25 29.54 68.60 2.03 44.27 16 25 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 26 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 27 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 28 C -0.05 -1.12 4.65 29.90 0.14 -0.98 16 29 H 0.12 0.48 8.14 -2.38 -0.02 0.46 16 30 H 0.07 0.39 7.66 -2.39 -0.02 0.37 16 31 H 0.07 0.39 7.66 -2.39 -0.02 0.38 16 32 H 0.16 1.45 6.31 -2.91 -0.02 1.43 16 33 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 34 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 35 H 0.13 2.92 8.05 -2.39 -0.02 2.90 16 36 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.05 2.20 8.13 -2.39 -0.02 2.19 16 38 H 0.05 2.28 8.13 -2.39 -0.02 2.26 16 39 H 0.04 1.48 7.68 -2.39 -0.02 1.47 16 40 H 0.06 3.19 6.07 -2.39 -0.01 3.17 16 41 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.06 3.24 6.07 -2.39 -0.01 3.22 16 44 H 0.03 1.44 7.68 -2.39 -0.02 1.42 16 45 H 0.26 13.57 8.31 -92.71 -0.77 12.80 16 46 H 0.08 1.90 7.71 -2.39 -0.02 1.88 16 47 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -62.17 379.99 6.27 -55.91 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 0.97 Total: 15.23 kcal Atomic # 6 Polarization: -24.34 SS G_CDS: 5.09 Total: -19.24 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: 0.20 Total: -48.24 kcal Atomic # 8 Polarization: -45.91 SS G_CDS: -2.02 Total: -47.93 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Total: -62.17 6.27 -55.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184811584.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.149 kcal (2) G-P(sol) polarization free energy of solvation -62.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.72 seconds