Wall clock time and date at job start Wed Apr 1 2020 00:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86807 * 120.00200 * 2 1 4 4 H 1.48500 * 109.47224 * 270.00469 * 3 2 1 5 5 H 1.48502 * 109.46439 * 29.99680 * 3 2 1 6 6 H 1.48499 * 109.47318 * 149.99971 * 3 2 1 7 7 C 1.38654 * 120.00248 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00414 * 179.97438 * 7 2 1 9 9 O 1.34830 * 120.00194 * 0.02562 * 7 2 1 10 10 C 1.35752 * 117.00426 * 185.06147 * 9 7 2 11 11 C 1.38877 * 120.06814 * 354.45850 * 10 9 7 12 12 C 1.38096 * 119.93136 * 180.02562 * 11 10 9 13 13 C 1.38304 * 120.06597 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.92468 * 179.97438 * 13 12 11 15 15 N 1.46502 * 109.47260 * 89.99992 * 14 13 12 16 16 C 1.34781 * 119.99935 * 179.97438 * 15 14 13 17 17 O 1.21588 * 119.99896 * 359.97438 * 16 15 14 18 18 N 1.34776 * 119.99795 * 179.97438 * 16 15 14 19 19 C 1.46499 * 119.99641 * 179.97438 * 18 16 15 20 20 C 1.53004 * 109.46879 * 179.97438 * 19 18 16 21 21 H 1.09008 * 110.01464 * 306.39264 * 20 19 18 22 22 C 1.53871 * 110.03124 * 67.83432 * 20 19 18 23 23 C 1.54263 * 106.59824 * 119.28505 * 22 20 19 24 24 C 1.54896 * 104.19804 * 23.61141 * 23 22 20 25 25 H 1.08999 * 110.75682 * 80.37043 * 24 23 22 26 26 O 1.42901 * 110.91317 * 203.67225 * 24 23 22 27 27 C 1.54269 * 110.03332 * 185.00123 * 20 19 18 28 28 C 1.38288 * 120.14033 * 0.24970 * 13 12 11 29 29 C 1.38100 * 120.07289 * 359.45314 * 28 13 12 30 30 H 0.96998 * 119.99659 * 0.02562 * 1 2 3 31 31 H 1.08007 * 120.03292 * 0.02562 * 11 10 9 32 32 H 1.07999 * 119.96449 * 180.02562 * 12 11 10 33 33 H 1.09003 * 109.47406 * 329.99823 * 14 13 12 34 34 H 1.09001 * 109.46863 * 210.00018 * 14 13 12 35 35 H 0.96997 * 120.00147 * 359.97438 * 15 14 13 36 36 H 0.97002 * 119.99834 * 359.97438 * 18 16 15 37 37 H 1.08999 * 109.47222 * 60.00194 * 19 18 16 38 38 H 1.08995 * 109.47389 * 299.99754 * 19 18 16 39 39 H 1.09001 * 110.03225 * 238.56808 * 22 20 19 40 40 H 1.08996 * 110.03726 * 359.97438 * 22 20 19 41 41 H 1.09000 * 110.48995 * 264.92767 * 23 22 20 42 42 H 1.09003 * 110.48611 * 142.28533 * 23 22 20 43 43 H 0.96695 * 113.99958 * 295.94476 * 26 24 23 44 44 H 1.09002 * 110.48539 * 98.42264 * 27 20 19 45 45 H 1.09002 * 110.48380 * 335.78408 * 27 20 19 46 46 H 1.08000 * 119.96862 * 179.70631 * 28 13 12 47 47 H 1.07994 * 120.04156 * 180.26839 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4470 2.6526 0.7000 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2008 -0.0010 9 8 1.3348 -2.3685 -0.0016 10 6 2.0701 -3.5047 0.1046 11 6 3.4572 -3.4395 0.0922 12 6 4.2024 -4.5972 0.2000 13 6 3.5686 -5.8206 0.3196 14 6 4.3848 -7.0820 0.4363 15 7 4.6555 -7.3595 1.8491 16 6 5.3739 -8.4456 2.1969 17 8 5.7970 -9.1952 1.3382 18 7 5.6234 -8.7006 3.4966 19 6 6.4038 -9.8813 3.8747 20 6 6.5407 -9.9360 5.3976 21 1 6.9434 -8.9940 5.7701 22 6 5.1708 -10.2156 6.0402 23 6 5.3098 -11.5427 6.8143 24 6 6.8274 -11.6574 7.1021 25 1 7.1052 -11.0457 7.9604 26 8 7.2056 -13.0197 7.3100 27 6 7.4643 -11.1030 5.8037 28 6 2.1874 -5.8893 0.3265 29 6 1.4366 -4.7347 0.2253 30 1 -0.4849 0.8401 -0.0004 31 1 3.9528 -2.4844 -0.0016 32 1 5.2812 -4.5471 0.1908 33 1 5.3275 -6.9554 -0.0962 34 1 3.8312 -7.9145 0.0021 35 1 4.3177 -6.7617 2.5342 36 1 5.2862 -8.1023 4.1817 37 1 7.3941 -9.8222 3.4232 38 1 5.8970 -10.7798 3.5226 39 1 4.9082 -9.4095 6.7253 40 1 4.4084 -10.3119 5.2673 41 1 4.9734 -12.3789 6.2015 42 1 4.7468 -11.5012 7.7468 43 1 6.8020 -13.4254 8.0894 44 1 8.4737 -10.7405 5.9984 45 1 7.4759 -11.8681 5.0275 46 1 1.6953 -6.8466 0.4153 47 1 0.3580 -4.7886 0.2352 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190501388.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:42 Heat of formation + Delta-G solvation = -98.700096 kcal Electronic energy + Delta-G solvation = -27083.048432 eV Core-core repulsion = 23037.740652 eV Total energy + Delta-G solvation = -4045.307780 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.17506 -39.31104 -38.97418 -36.96273 -36.27715 -34.34811 -34.10833 -32.37825 -30.43082 -30.25396 -29.45252 -28.42911 -25.96125 -25.05741 -24.03015 -22.06184 -21.47209 -20.70541 -20.63638 -20.35089 -18.49031 -18.07810 -17.69276 -17.04890 -16.62874 -16.31679 -15.56036 -15.06988 -14.79728 -14.70324 -14.50072 -14.40015 -14.27110 -13.87959 -13.74030 -13.62553 -13.34160 -13.06839 -12.79624 -12.73754 -12.60680 -12.22570 -12.08659 -11.69849 -11.64667 -11.40377 -11.28092 -11.10688 -10.97782 -10.91218 -10.79751 -10.69158 -10.50411 -10.37743 -10.17922 -9.43962 -9.30328 -8.92646 -8.74970 -8.29428 -7.34257 -6.54311 -4.13260 2.01948 2.12119 2.82436 3.07772 3.08320 3.13113 3.26053 3.66809 3.89118 4.04356 4.08116 4.29280 4.45329 4.57399 4.67601 4.78753 4.93342 5.00765 5.02662 5.09493 5.15399 5.21213 5.23839 5.35494 5.44450 5.49908 5.51081 5.57295 5.66564 5.72481 5.77427 5.81812 5.90373 5.94697 6.11245 6.34592 6.36290 6.57517 6.61500 6.79412 6.88646 6.98682 7.14923 7.17695 7.27081 7.34115 7.70551 7.90412 8.05085 8.63775 8.91064 9.59265 10.63183 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020298 B = 0.001670 C = 0.001627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.116746 B =16760.104367 C =17202.325661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.394 4.394 8 H 0.093 0.907 9 O -0.174 6.174 10 C 0.160 3.840 11 C -0.237 4.237 12 C -0.050 4.050 13 C -0.214 4.214 14 C 0.198 3.802 15 N -0.738 5.738 16 C 0.700 3.300 17 O -0.597 6.597 18 N -0.750 5.750 19 C 0.147 3.853 20 C -0.103 4.103 21 H 0.083 0.917 22 C -0.122 4.122 23 C -0.157 4.157 24 C 0.096 3.904 25 H 0.064 0.936 26 O -0.564 6.564 27 C -0.109 4.109 28 C -0.054 4.054 29 C -0.196 4.196 30 H 0.271 0.729 31 H 0.128 0.872 32 H 0.108 0.892 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.397 0.603 36 H 0.395 0.605 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.378 0.622 44 H 0.075 0.925 45 H 0.082 0.918 46 H 0.112 0.888 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.334 -18.549 14.566 26.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.470 4.470 8 H 0.111 0.889 9 O -0.076 6.076 10 C 0.106 3.894 11 C -0.257 4.257 12 C -0.069 4.069 13 C -0.215 4.215 14 C 0.075 3.925 15 N -0.393 5.393 16 C 0.400 3.600 17 O -0.476 6.476 18 N -0.407 5.407 19 C 0.023 3.977 20 C -0.122 4.122 21 H 0.101 0.899 22 C -0.160 4.160 23 C -0.195 4.195 24 C 0.037 3.963 25 H 0.082 0.918 26 O -0.370 6.370 27 C -0.147 4.147 28 C -0.073 4.073 29 C -0.215 4.215 30 H 0.081 0.919 31 H 0.146 0.854 32 H 0.126 0.874 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.231 0.769 36 H 0.229 0.771 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.225 0.775 44 H 0.093 0.907 45 H 0.100 0.900 46 H 0.130 0.870 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 11.629 -18.900 13.162 25.801 hybrid contribution -0.244 1.434 1.164 1.863 sum 11.385 -17.466 14.326 25.296 Atomic orbital electron populations 1.70035 1.06003 1.27860 1.45448 1.25317 0.95859 0.98926 0.96349 0.85697 0.78919 0.79925 0.78817 1.19783 1.20187 1.19147 1.21356 0.91871 0.80726 1.53021 0.88921 1.83978 1.34518 1.11563 1.77567 1.19444 0.90324 0.88048 0.91620 1.21161 0.93772 0.98958 1.11772 1.20650 0.98397 0.91617 0.96225 1.19227 0.93559 0.93653 1.15095 1.19825 0.98254 0.94544 0.79877 1.45509 1.57437 1.26752 1.09611 1.16026 0.79380 0.81896 0.82685 1.90912 1.57543 1.50060 1.49082 1.45125 1.59812 1.29542 1.06184 1.21234 0.95847 0.87650 0.92973 1.21980 0.96041 0.99432 0.94757 0.89881 1.22177 0.96963 0.97158 0.99690 1.23061 0.96920 0.98770 1.00747 1.22838 0.93255 0.82752 0.97465 0.91761 1.86508 1.73146 1.26061 1.51279 1.22269 0.98527 0.97090 0.96774 1.20536 0.92784 0.96814 0.97118 1.20219 0.99667 0.90245 1.11379 0.91882 0.85433 0.87384 0.91794 0.91754 0.76928 0.77104 0.91602 0.91507 0.91311 0.90758 0.90544 0.91421 0.77465 0.90661 0.89972 0.86953 0.86391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.53 13.67 55.48 0.76 -23.77 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 19.90 29.55 -169.99 -5.02 14.88 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.39 -10.64 9.49 30.89 0.29 -10.35 16 8 H 0.09 2.31 5.20 -52.49 -0.27 2.03 16 9 O -0.17 -4.79 9.76 0.04 0.00 -4.79 16 10 C 0.16 3.69 6.65 -39.11 -0.26 3.43 16 11 C -0.24 -4.88 9.17 -39.40 -0.36 -5.24 16 12 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 13 C -0.21 -3.40 5.25 -104.58 -0.55 -3.95 16 14 C 0.20 2.80 5.80 -5.19 -0.03 2.77 16 15 N -0.74 -9.24 5.55 -66.41 -0.37 -9.61 16 16 C 0.70 9.42 8.57 -86.92 -0.74 8.67 16 17 O -0.60 -10.50 16.34 5.29 0.09 -10.41 16 18 N -0.75 -7.11 5.35 -65.22 -0.35 -7.46 16 19 C 0.15 1.27 4.68 -4.04 -0.02 1.25 16 20 C -0.10 -0.62 2.96 -89.50 -0.27 -0.88 16 21 H 0.08 0.44 8.14 -51.92 -0.42 0.01 16 22 C -0.12 -0.68 6.18 -25.62 -0.16 -0.84 16 23 C -0.16 -0.85 6.56 -25.07 -0.16 -1.01 16 24 C 0.10 0.56 4.27 -24.74 -0.11 0.45 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 26 O -0.56 -3.81 13.45 -35.23 -0.47 -4.28 16 27 C -0.11 -0.69 6.08 -25.07 -0.15 -0.84 16 28 C -0.05 -0.89 9.69 -39.61 -0.38 -1.28 16 29 C -0.20 -3.91 9.99 -39.39 -0.39 -4.30 16 30 H 0.27 7.09 8.31 -40.82 -0.34 6.76 16 31 H 0.13 2.64 5.64 -52.48 -0.30 2.35 16 32 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 33 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 34 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 35 H 0.40 4.31 8.48 -40.82 -0.35 3.96 16 36 H 0.40 2.76 8.37 -40.82 -0.34 2.42 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.07 0.49 7.61 -51.93 -0.40 0.10 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.38 0.98 9.12 45.56 0.42 1.40 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.08 0.61 7.85 -51.93 -0.41 0.21 16 46 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 47 H 0.12 2.29 8.06 -52.49 -0.42 1.86 16 LS Contribution 391.59 15.07 5.90 5.90 Total: -1.00 -33.29 391.59 -9.51 -42.80 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -6.27 Total: 9.11 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -3.77 Total: -12.37 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: 0.04 Total: -40.84 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.39 Total: -19.48 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.29 -9.51 -42.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190501388.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.898 kcal (2) G-P(sol) polarization free energy of solvation -33.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds