Wall clock time and date at job start Wed Apr 1 2020 00:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86807 * 120.00200 * 2 1 4 4 H 1.48500 * 109.47224 * 270.00469 * 3 2 1 5 5 H 1.48502 * 109.46439 * 29.99680 * 3 2 1 6 6 H 1.48499 * 109.47318 * 149.99971 * 3 2 1 7 7 C 1.38654 * 120.00248 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00414 * 179.97438 * 7 2 1 9 9 O 1.34830 * 120.00194 * 0.02562 * 7 2 1 10 10 C 1.35752 * 117.00426 * 185.06147 * 9 7 2 11 11 C 1.38877 * 120.06814 * 354.45850 * 10 9 7 12 12 C 1.38096 * 119.93136 * 180.02562 * 11 10 9 13 13 C 1.38304 * 120.06597 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.92468 * 179.97438 * 13 12 11 15 15 N 1.46502 * 109.47260 * 89.99992 * 14 13 12 16 16 C 1.34781 * 119.99935 * 179.97438 * 15 14 13 17 17 O 1.21588 * 119.99896 * 359.97438 * 16 15 14 18 18 N 1.34776 * 119.99795 * 179.97438 * 16 15 14 19 19 C 1.46499 * 119.99641 * 179.97438 * 18 16 15 20 20 C 1.53004 * 109.46879 * 179.97438 * 19 18 16 21 21 H 1.09008 * 110.01464 * 306.39264 * 20 19 18 22 22 C 1.53871 * 110.03124 * 67.83432 * 20 19 18 23 23 C 1.54263 * 106.59824 * 119.28505 * 22 20 19 24 24 C 1.54896 * 104.19804 * 23.61141 * 23 22 20 25 25 H 1.08999 * 110.75682 * 80.37043 * 24 23 22 26 26 O 1.42901 * 110.91317 * 203.67225 * 24 23 22 27 27 C 1.54269 * 110.03332 * 185.00123 * 20 19 18 28 28 C 1.38288 * 120.14033 * 0.24970 * 13 12 11 29 29 C 1.38100 * 120.07289 * 359.45314 * 28 13 12 30 30 H 0.96998 * 119.99659 * 0.02562 * 1 2 3 31 31 H 1.08007 * 120.03292 * 0.02562 * 11 10 9 32 32 H 1.07999 * 119.96449 * 180.02562 * 12 11 10 33 33 H 1.09003 * 109.47406 * 329.99823 * 14 13 12 34 34 H 1.09001 * 109.46863 * 210.00018 * 14 13 12 35 35 H 0.96997 * 120.00147 * 359.97438 * 15 14 13 36 36 H 0.97002 * 119.99834 * 359.97438 * 18 16 15 37 37 H 1.08999 * 109.47222 * 60.00194 * 19 18 16 38 38 H 1.08995 * 109.47389 * 299.99754 * 19 18 16 39 39 H 1.09001 * 110.03225 * 238.56808 * 22 20 19 40 40 H 1.08996 * 110.03726 * 359.97438 * 22 20 19 41 41 H 1.09000 * 110.48995 * 264.92767 * 23 22 20 42 42 H 1.09003 * 110.48611 * 142.28533 * 23 22 20 43 43 H 0.96695 * 113.99958 * 295.94476 * 26 24 23 44 44 H 1.09002 * 110.48539 * 98.42264 * 27 20 19 45 45 H 1.09002 * 110.48380 * 335.78408 * 27 20 19 46 46 H 1.08000 * 119.96862 * 179.70631 * 28 13 12 47 47 H 1.07994 * 120.04156 * 180.26839 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4470 2.6526 0.7000 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2008 -0.0010 9 8 1.3348 -2.3685 -0.0016 10 6 2.0701 -3.5047 0.1046 11 6 3.4572 -3.4395 0.0922 12 6 4.2024 -4.5972 0.2000 13 6 3.5686 -5.8206 0.3196 14 6 4.3848 -7.0820 0.4363 15 7 4.6555 -7.3595 1.8491 16 6 5.3739 -8.4456 2.1969 17 8 5.7970 -9.1952 1.3382 18 7 5.6234 -8.7006 3.4966 19 6 6.4038 -9.8813 3.8747 20 6 6.5407 -9.9360 5.3976 21 1 6.9434 -8.9940 5.7701 22 6 5.1708 -10.2156 6.0402 23 6 5.3098 -11.5427 6.8143 24 6 6.8274 -11.6574 7.1021 25 1 7.1052 -11.0457 7.9604 26 8 7.2056 -13.0197 7.3100 27 6 7.4643 -11.1030 5.8037 28 6 2.1874 -5.8893 0.3265 29 6 1.4366 -4.7347 0.2253 30 1 -0.4849 0.8401 -0.0004 31 1 3.9528 -2.4844 -0.0016 32 1 5.2812 -4.5471 0.1908 33 1 5.3275 -6.9554 -0.0962 34 1 3.8312 -7.9145 0.0021 35 1 4.3177 -6.7617 2.5342 36 1 5.2862 -8.1023 4.1817 37 1 7.3941 -9.8222 3.4232 38 1 5.8970 -10.7798 3.5226 39 1 4.9082 -9.4095 6.7253 40 1 4.4084 -10.3119 5.2673 41 1 4.9734 -12.3789 6.2015 42 1 4.7468 -11.5012 7.7468 43 1 6.8020 -13.4254 8.0894 44 1 8.4737 -10.7405 5.9984 45 1 7.4759 -11.8681 5.0275 46 1 1.6953 -6.8466 0.4153 47 1 0.3580 -4.7886 0.2352 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190501388.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:24 Heat of formation + Delta-G solvation = -123.735273 kcal Electronic energy + Delta-G solvation = -27084.134039 eV Core-core repulsion = 23037.740652 eV Total energy + Delta-G solvation = -4046.393387 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 21.60 seconds Orbital eigenvalues (eV) -41.20201 -40.71914 -39.76411 -38.52752 -36.92995 -35.59655 -34.92043 -34.25792 -31.84577 -31.54001 -30.25721 -29.03306 -27.63582 -26.34052 -24.94832 -23.63843 -22.29250 -22.04625 -21.47188 -20.90182 -19.88272 -19.41804 -18.82704 -18.20510 -17.43301 -17.06702 -16.63919 -16.38549 -16.15651 -15.98254 -15.75211 -15.53064 -15.29429 -15.09193 -14.88810 -14.72742 -14.40812 -14.35418 -14.09277 -13.68391 -13.56744 -13.27633 -13.19236 -13.01987 -12.70909 -12.55150 -12.36263 -12.22110 -12.12918 -12.11091 -11.81808 -11.59138 -11.40824 -11.32339 -11.19592 -10.80886 -10.79977 -10.34716 -9.81516 -9.70781 -9.01519 -8.47983 -6.16247 0.53381 0.58408 1.36305 1.44211 1.53251 1.83810 2.17401 2.19295 2.80669 3.11838 3.24950 3.48885 3.50311 3.60426 3.61060 3.89387 4.02374 4.04341 4.18266 4.21158 4.28355 4.46062 4.47988 4.50977 4.57658 4.61115 4.72393 4.75467 4.81467 4.84235 4.89755 5.00462 5.05002 5.11927 5.14994 5.23297 5.27384 5.33785 5.40219 5.49123 5.53722 5.56057 5.69586 5.76506 6.01790 6.04582 6.16980 6.91767 6.96878 7.12967 7.61522 7.76093 8.74735 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020298 B = 0.001670 C = 0.001627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.116746 B =16760.104367 C =17202.325661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.021 4.021 3 Si 1.018 2.982 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.252 1.252 7 C -0.414 4.414 8 H 0.104 0.896 9 O -0.229 6.229 10 C 0.123 3.877 11 C -0.244 4.244 12 C -0.044 4.044 13 C -0.181 4.181 14 C 0.204 3.796 15 N -0.730 5.730 16 C 0.699 3.301 17 O -0.640 6.640 18 N -0.732 5.732 19 C 0.149 3.851 20 C -0.091 4.091 21 H 0.099 0.901 22 C -0.120 4.120 23 C -0.154 4.154 24 C 0.096 3.904 25 H 0.080 0.920 26 O -0.586 6.586 27 C -0.113 4.113 28 C -0.043 4.043 29 C -0.204 4.204 30 H 0.273 0.727 31 H 0.120 0.880 32 H 0.139 0.861 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.408 0.592 36 H 0.411 0.589 37 H 0.055 0.945 38 H 0.051 0.949 39 H 0.084 0.916 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.081 0.919 43 H 0.395 0.605 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.147 0.853 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.435 -19.663 16.218 28.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.219 4.219 3 Si 0.837 3.163 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.175 1.175 7 C -0.490 4.490 8 H 0.121 0.879 9 O -0.136 6.136 10 C 0.072 3.928 11 C -0.263 4.263 12 C -0.063 4.063 13 C -0.182 4.182 14 C 0.080 3.920 15 N -0.386 5.386 16 C 0.398 3.602 17 O -0.522 6.522 18 N -0.389 5.389 19 C 0.024 3.976 20 C -0.109 4.109 21 H 0.117 0.883 22 C -0.158 4.158 23 C -0.192 4.192 24 C 0.037 3.963 25 H 0.098 0.902 26 O -0.394 6.394 27 C -0.151 4.151 28 C -0.061 4.061 29 C -0.224 4.224 30 H 0.082 0.918 31 H 0.138 0.862 32 H 0.157 0.843 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.244 0.756 36 H 0.247 0.753 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.103 0.897 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.100 0.900 43 H 0.244 0.756 44 H 0.099 0.901 45 H 0.083 0.917 46 H 0.164 0.836 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 13.751 -20.061 14.876 28.510 hybrid contribution -0.755 1.351 0.696 1.697 sum 12.996 -18.711 15.572 27.595 Atomic orbital electron populations 1.70179 1.08017 1.28838 1.48586 1.26573 0.96817 1.02726 0.95792 0.84599 0.77876 0.74633 0.79207 1.18964 1.19677 1.17533 1.21835 0.92584 0.81331 1.53233 0.87884 1.83947 1.36081 1.12677 1.80845 1.19997 0.91632 0.87945 0.93266 1.21243 0.92997 1.00060 1.11980 1.20937 0.99801 0.90697 0.94862 1.19481 0.93438 0.94080 1.11193 1.19702 0.98018 0.93298 0.80962 1.45227 1.57352 1.26838 1.09172 1.16144 0.79127 0.81507 0.83384 1.90893 1.59211 1.51455 1.50599 1.44981 1.58949 1.29738 1.05229 1.21260 0.94815 0.86616 0.94865 1.21891 0.96454 1.00039 0.92558 0.88273 1.22173 0.96174 0.97803 0.99655 1.23029 0.96903 0.98142 1.01118 1.22886 0.93236 0.82640 0.97512 0.90240 1.86464 1.73718 1.26677 1.52575 1.22296 0.99090 0.96859 0.96852 1.20872 0.93060 0.96963 0.95210 1.20448 1.00080 0.90376 1.11464 0.91820 0.86175 0.84349 0.91535 0.91318 0.75641 0.75278 0.92655 0.93019 0.89717 0.91848 0.91936 0.90003 0.75564 0.90124 0.91673 0.83555 0.86674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.12 13.67 21.61 0.30 -54.83 16 2 C -0.02 -1.17 5.49 84.83 0.47 -0.71 16 3 Si 1.02 41.61 29.55 68.60 2.03 43.64 16 4 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 5 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 6 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 7 C -0.41 -23.33 9.49 67.92 0.64 -22.68 16 8 H 0.10 5.29 5.20 -2.91 -0.02 5.28 16 9 O -0.23 -13.34 9.76 -22.76 -0.22 -13.57 16 10 C 0.12 5.78 6.65 22.58 0.15 5.93 16 11 C -0.24 -9.91 9.17 22.39 0.21 -9.71 16 12 C -0.04 -1.40 9.69 22.25 0.22 -1.19 16 13 C -0.18 -5.14 5.25 -19.84 -0.10 -5.25 16 14 C 0.20 5.02 5.80 85.63 0.50 5.52 16 15 N -0.73 -15.76 5.55 -482.28 -2.68 -18.44 16 16 C 0.70 17.03 8.57 179.05 1.53 18.56 16 17 O -0.64 -21.41 16.34 -3.99 -0.07 -21.47 16 18 N -0.73 -12.04 5.35 -478.53 -2.56 -14.60 16 19 C 0.15 2.35 4.68 86.38 0.40 2.76 16 20 C -0.09 -0.88 2.96 -10.07 -0.03 -0.91 16 21 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 22 C -0.12 -1.04 6.18 31.32 0.19 -0.85 16 23 C -0.15 -1.35 6.56 31.67 0.21 -1.14 16 24 C 0.10 0.92 4.27 31.89 0.14 1.06 16 25 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 26 O -0.59 -7.08 13.45 -148.98 -2.00 -9.09 16 27 C -0.11 -1.27 6.08 31.67 0.19 -1.08 16 28 C -0.04 -1.30 9.69 22.25 0.22 -1.09 16 29 C -0.20 -8.12 9.99 22.39 0.22 -7.90 16 30 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 31 H 0.12 5.01 5.64 -2.91 -0.02 4.99 16 32 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 33 H 0.07 1.69 8.08 -2.39 -0.02 1.67 16 34 H 0.07 1.72 8.08 -2.39 -0.02 1.70 16 35 H 0.41 7.24 8.48 -92.71 -0.79 6.46 16 36 H 0.41 4.35 8.37 -92.71 -0.78 3.57 16 37 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.06 0.71 7.61 -2.39 -0.02 0.69 16 41 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.39 1.44 9.12 -74.06 -0.68 0.76 16 44 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.06 0.96 7.85 -2.39 -0.02 0.94 16 46 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 47 H 0.12 4.56 8.06 -2.91 -0.02 4.53 16 Total: -1.00 -76.67 391.59 -1.27 -77.94 By element: Atomic # 1 Polarization: 30.30 SS G_CDS: -1.22 Total: 29.08 kcal Atomic # 6 Polarization: -23.82 SS G_CDS: 5.15 Total: -18.67 kcal Atomic # 7 Polarization: -82.92 SS G_CDS: -4.94 Total: -87.86 kcal Atomic # 8 Polarization: -41.84 SS G_CDS: -2.29 Total: -44.13 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Total: -76.67 -1.27 -77.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190501388.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.790 kcal (2) G-P(sol) polarization free energy of solvation -76.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 21.60 seconds