Wall clock time and date at job start Tue Mar 31 2020 23:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99676 * 2 1 4 4 H 1.48503 * 109.46725 * 269.99681 * 3 2 1 5 5 H 1.48496 * 109.47307 * 29.99770 * 3 2 1 6 6 H 1.48499 * 109.46781 * 149.99871 * 3 2 1 7 7 C 1.37875 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00513 * 0.02562 * 7 2 1 9 9 C 1.50707 * 119.99595 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47041 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.47255 * 54.99702 * 10 9 7 12 12 N 1.46496 * 109.47227 * 294.99827 * 10 9 7 13 13 C 1.34778 * 119.99983 * 154.99860 * 12 10 9 14 14 O 1.21582 * 120.00428 * 0.02562 * 13 12 10 15 15 N 1.34780 * 119.99924 * 179.97438 * 13 12 10 16 16 O 1.41598 * 120.00088 * 180.02562 * 15 13 12 17 17 C 1.42905 * 114.00099 * 180.02562 * 16 15 13 18 18 C 1.52993 * 109.47098 * 180.02562 * 17 16 15 19 19 H 1.09008 * 110.75634 * 57.01336 * 18 17 16 20 20 C 1.55306 * 110.84581 * 180.70968 * 18 17 16 21 21 C 1.54956 * 100.93943 * 152.32459 * 20 18 17 22 22 O 1.43645 * 105.13564 * 323.55196 * 21 20 18 23 23 C 1.43243 * 109.97027 * 24.43352 * 22 21 20 24 24 C 1.50701 * 109.47189 * 174.99849 * 10 9 7 25 25 C 1.38235 * 119.99808 * 260.00012 * 24 10 9 26 26 C 1.38243 * 119.99602 * 179.97438 * 25 24 10 27 27 C 1.38232 * 120.00069 * 0.09581 * 26 25 24 28 28 C 1.38234 * 119.99842 * 359.83724 * 27 26 25 29 29 C 1.38230 * 119.99865 * 79.97758 * 24 10 9 30 30 H 0.96993 * 120.00476 * 0.02562 * 1 2 3 31 31 H 1.08995 * 109.47335 * 59.99723 * 9 7 2 32 32 H 1.09001 * 109.46781 * 299.99963 * 9 7 2 33 33 H 0.96998 * 119.99890 * 335.00230 * 12 10 9 34 34 H 0.96998 * 119.99949 * 0.02562 * 15 13 12 35 35 H 1.09003 * 109.46506 * 299.99702 * 17 16 15 36 36 H 1.09002 * 109.47216 * 59.99569 * 17 16 15 37 37 H 1.08997 * 111.12608 * 270.23539 * 20 18 17 38 38 H 1.08990 * 111.12513 * 34.40748 * 20 18 17 39 39 H 1.09003 * 110.30611 * 204.64656 * 21 20 18 40 40 H 1.08993 * 110.31344 * 82.46953 * 21 20 18 41 41 H 1.09002 * 109.82855 * 238.76952 * 23 22 21 42 42 H 1.09000 * 109.90897 * 117.84015 * 23 22 21 43 43 H 1.08000 * 120.00616 * 359.70324 * 25 24 10 44 44 H 1.08001 * 119.99556 * 179.97438 * 26 25 24 45 45 H 1.07997 * 119.99649 * 179.97438 * 27 26 25 46 46 H 1.08008 * 119.99453 * 180.11401 * 28 27 26 47 47 H 1.08001 * 120.00350 * 359.97438 * 29 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 1 3.5873 -3.1754 -0.8411 12 7 3.6336 -3.2917 1.2525 13 6 3.5068 -4.6327 1.2999 14 8 3.7148 -5.2987 0.3042 15 7 3.1503 -5.2356 2.4514 16 8 3.0176 -6.6444 2.5014 17 6 2.6345 -7.1471 3.7831 18 6 2.5226 -8.6716 3.7204 19 1 3.4614 -9.1145 3.3875 20 6 2.0898 -9.2510 5.0948 21 6 1.3670 -10.5484 4.6525 22 8 0.6971 -10.2060 3.4288 23 6 1.3573 -9.0997 2.8027 24 6 5.5236 -2.6382 -0.1223 25 6 6.1162 -2.8809 -1.3474 26 6 7.4940 -2.8819 -1.4605 27 6 8.2790 -2.6424 -0.3483 28 6 7.6863 -2.3984 0.8765 29 6 6.3086 -2.3968 0.9896 30 1 -0.4850 0.8399 -0.0004 31 1 3.8746 -0.6800 0.8910 32 1 3.8752 -0.6804 -0.8889 33 1 3.4680 -2.7605 2.0470 34 1 2.9847 -4.7044 3.2459 35 1 3.3859 -6.8684 4.5220 36 1 1.6713 -6.7230 4.0667 37 1 2.9562 -9.4766 5.7165 38 1 1.4054 -8.5755 5.6079 39 1 0.6426 -10.8540 5.4075 40 1 2.0910 -11.3441 4.4776 41 1 0.6583 -8.2720 2.6821 42 1 1.7446 -9.4011 1.8294 43 1 5.5030 -3.0739 -2.2152 44 1 7.9570 -3.0719 -2.4176 45 1 9.3554 -2.6437 -0.4367 46 1 8.2997 -2.2095 1.7451 47 1 5.8456 -2.2065 1.9466 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191507962.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:18 Heat of formation + Delta-G solvation = -43.939758 kcal Electronic energy + Delta-G solvation = -28375.396272 eV Core-core repulsion = 24332.463079 eV Total energy + Delta-G solvation = -4042.933194 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 2.83 seconds Orbital eigenvalues (eV) -39.92045 -39.69006 -38.64537 -37.23719 -35.19874 -33.53333 -32.73615 -31.99130 -30.65593 -30.37708 -29.57258 -29.12391 -25.85292 -24.92844 -22.72168 -22.35067 -21.77475 -21.41865 -20.86308 -19.86852 -18.38522 -17.75291 -17.20930 -17.08062 -16.36270 -16.17433 -15.60141 -15.35659 -15.03283 -14.88462 -14.54783 -14.34243 -14.20128 -13.80537 -13.56117 -13.44787 -13.10760 -12.98669 -12.74963 -12.59900 -12.39783 -12.19112 -11.82947 -11.77131 -11.68476 -11.35609 -11.19456 -11.11114 -10.87645 -10.73469 -10.64096 -10.18701 -9.87770 -9.78276 -9.74860 -9.34715 -8.82916 -8.64464 -8.59969 -8.43100 -8.29034 -6.12268 -4.12320 1.61729 1.72103 1.84375 3.24618 3.33027 3.34673 3.55881 3.65483 3.90370 4.05184 4.18136 4.36534 4.44201 4.52276 4.63379 4.83664 4.86445 4.91689 5.09831 5.17957 5.19232 5.20637 5.21859 5.28212 5.32906 5.40835 5.44681 5.50982 5.70523 5.80662 5.82141 5.84050 5.98903 6.22964 6.30752 6.42393 6.69768 6.72914 6.76233 6.78141 6.86376 6.93516 7.04371 7.11223 7.31596 7.39835 7.63365 8.35905 8.43201 8.94299 9.04485 9.48230 11.00436 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009642 B = 0.002993 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2903.229348 B = 9353.396906 C =11522.161970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.071 3.929 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.077 0.923 9 C -0.014 4.014 10 C 0.216 3.784 11 H 0.094 0.906 12 N -0.708 5.708 13 C 0.723 3.277 14 O -0.576 6.576 15 N -0.619 5.619 16 O -0.129 6.129 17 C 0.042 3.958 18 C -0.114 4.114 19 H 0.098 0.902 20 C -0.147 4.147 21 C 0.052 3.948 22 O -0.385 6.385 23 C 0.056 3.944 24 C -0.078 4.078 25 C -0.105 4.105 26 C -0.123 4.123 27 C -0.133 4.133 28 C -0.126 4.126 29 C -0.108 4.108 30 H 0.264 0.736 31 H 0.024 0.976 32 H 0.032 0.968 33 H 0.398 0.602 34 H 0.402 0.598 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.123 0.877 44 H 0.117 0.883 45 H 0.114 0.886 46 H 0.115 0.885 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.570 -12.709 11.334 20.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.131 4.131 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.559 4.559 8 H 0.095 0.905 9 C -0.052 4.052 10 C 0.112 3.888 11 H 0.112 0.888 12 N -0.364 5.364 13 C 0.423 3.577 14 O -0.452 6.452 15 N -0.324 5.324 16 O -0.132 6.132 17 C -0.036 4.036 18 C -0.134 4.134 19 H 0.117 0.883 20 C -0.185 4.185 21 C -0.025 4.025 22 O -0.304 6.304 23 C -0.020 4.020 24 C -0.080 4.080 25 C -0.124 4.124 26 C -0.141 4.141 27 C -0.151 4.151 28 C -0.144 4.144 29 C -0.126 4.126 30 H 0.074 0.926 31 H 0.042 0.958 32 H 0.051 0.949 33 H 0.232 0.768 34 H 0.241 0.759 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.141 0.859 44 H 0.135 0.865 45 H 0.132 0.868 46 H 0.133 0.867 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.435 -13.454 10.140 19.817 hybrid contribution 0.339 1.546 1.178 1.973 sum 10.774 -11.907 11.318 19.646 Atomic orbital electron populations 1.69907 1.06269 1.26952 1.50464 1.24992 0.94679 0.98970 0.94483 0.86862 0.80314 0.83864 0.78744 1.20176 1.21412 1.18943 1.21027 0.88651 0.94733 1.51469 0.90502 1.19894 0.97870 0.89659 0.97748 1.19880 0.87428 0.95837 0.85652 0.88759 1.44869 1.73559 1.03153 1.14836 1.15397 0.78101 0.82360 0.81822 1.90907 1.57154 1.63572 1.33564 1.46180 1.78335 0.94898 1.13014 1.90553 1.91884 1.01429 1.29324 1.22912 1.00414 0.93586 0.86688 1.22665 1.00945 0.93406 0.96410 0.88350 1.23277 1.01451 0.97589 0.96203 1.23356 0.96268 0.96117 0.86731 1.88429 1.54121 1.51056 1.36834 1.23229 0.93297 0.89358 0.96161 1.20611 0.97018 0.96861 0.93469 1.21055 0.94653 0.99184 0.97510 1.21068 0.93854 1.00777 0.98368 1.21015 0.99237 1.01668 0.93216 1.21044 0.94832 1.01174 0.97382 1.20902 0.93336 0.99935 0.98425 0.92633 0.95764 0.94946 0.76815 0.75913 0.91684 0.91556 0.89350 0.89792 0.89514 0.92003 0.90531 0.90536 0.85903 0.86478 0.86790 0.86733 0.86567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.50 13.96 55.43 0.77 -25.73 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.87 20.50 27.47 -169.99 -4.67 15.83 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.26 -5.88 6.54 56.52 0.37 -5.51 16 7 C -0.52 -13.72 9.39 -34.44 -0.32 -14.04 16 8 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 9 C -0.01 -0.31 3.56 -27.88 -0.10 -0.40 16 10 C 0.22 4.23 2.11 -69.09 -0.15 4.09 16 11 H 0.09 2.07 7.44 -51.93 -0.39 1.68 16 12 N -0.71 -12.46 4.04 -59.82 -0.24 -12.70 16 13 C 0.72 13.58 8.67 -86.91 -0.75 12.83 16 14 O -0.58 -13.34 16.41 -12.86 -0.21 -13.55 16 15 N -0.62 -9.14 6.39 27.63 0.18 -8.97 16 16 O -0.13 -1.89 10.95 -29.62 -0.32 -2.21 16 17 C 0.04 0.40 5.54 37.15 0.21 0.61 16 18 C -0.11 -1.00 3.29 -88.68 -0.29 -1.29 16 19 H 0.10 0.86 8.14 -51.92 -0.42 0.43 16 20 C -0.15 -0.94 6.62 -24.48 -0.16 -1.10 16 21 C 0.05 0.39 7.78 38.19 0.30 0.69 16 22 O -0.38 -4.40 11.36 -35.23 -0.40 -4.80 16 23 C 0.06 0.61 7.26 37.88 0.27 0.89 16 24 C -0.08 -1.38 4.91 -104.63 -0.51 -1.89 16 25 C -0.11 -1.75 9.67 -39.58 -0.38 -2.13 16 26 C -0.12 -1.75 10.05 -39.58 -0.40 -2.15 16 27 C -0.13 -1.79 10.05 -39.59 -0.40 -2.19 16 28 C -0.13 -1.75 10.05 -39.58 -0.40 -2.15 16 29 C -0.11 -1.69 9.32 -39.59 -0.37 -2.06 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.02 0.51 7.20 -51.93 -0.37 0.14 16 32 H 0.03 0.72 7.57 -51.93 -0.39 0.32 16 33 H 0.40 6.08 8.62 -40.82 -0.35 5.73 16 34 H 0.40 4.39 8.56 -40.82 -0.35 4.04 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 37 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.49 8.04 -51.93 -0.42 0.08 16 39 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.89 7.76 -51.93 -0.40 0.48 16 42 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.12 1.95 8.04 -52.49 -0.42 1.53 16 44 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 45 H 0.11 1.22 8.06 -52.49 -0.42 0.79 16 46 H 0.11 1.29 8.06 -52.48 -0.42 0.86 16 47 H 0.12 1.65 7.72 -52.49 -0.41 1.24 16 LS Contribution 393.40 15.07 5.93 5.93 Total: -1.00 -34.90 393.40 -9.83 -44.73 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -7.31 Total: 9.94 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -3.55 Total: -8.47 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: 0.71 Total: -47.40 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.94 Total: -20.56 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.67 Total: 15.83 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.90 -9.83 -44.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191507962.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.790 kcal (2) G-P(sol) polarization free energy of solvation -34.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.83 seconds