Wall clock time and date at job start Tue Mar 31 2020 23:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99676 * 2 1 4 4 H 1.48503 * 109.46725 * 269.99681 * 3 2 1 5 5 H 1.48496 * 109.47307 * 29.99770 * 3 2 1 6 6 H 1.48499 * 109.46781 * 149.99871 * 3 2 1 7 7 C 1.37875 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00513 * 0.02562 * 7 2 1 9 9 C 1.50707 * 119.99595 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47041 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.47255 * 54.99702 * 10 9 7 12 12 N 1.46496 * 109.47227 * 294.99827 * 10 9 7 13 13 C 1.34778 * 119.99983 * 154.99860 * 12 10 9 14 14 O 1.21582 * 120.00428 * 0.02562 * 13 12 10 15 15 N 1.34780 * 119.99924 * 179.97438 * 13 12 10 16 16 O 1.41598 * 120.00088 * 180.02562 * 15 13 12 17 17 C 1.42905 * 114.00099 * 180.02562 * 16 15 13 18 18 C 1.52993 * 109.47098 * 180.02562 * 17 16 15 19 19 H 1.09008 * 110.75634 * 57.01336 * 18 17 16 20 20 C 1.55306 * 110.84581 * 180.70968 * 18 17 16 21 21 C 1.54956 * 100.93943 * 152.32459 * 20 18 17 22 22 O 1.43645 * 105.13564 * 323.55196 * 21 20 18 23 23 C 1.43243 * 109.97027 * 24.43352 * 22 21 20 24 24 C 1.50701 * 109.47189 * 174.99849 * 10 9 7 25 25 C 1.38235 * 119.99808 * 260.00012 * 24 10 9 26 26 C 1.38243 * 119.99602 * 179.97438 * 25 24 10 27 27 C 1.38232 * 120.00069 * 0.09581 * 26 25 24 28 28 C 1.38234 * 119.99842 * 359.83724 * 27 26 25 29 29 C 1.38230 * 119.99865 * 79.97758 * 24 10 9 30 30 H 0.96993 * 120.00476 * 0.02562 * 1 2 3 31 31 H 1.08995 * 109.47335 * 59.99723 * 9 7 2 32 32 H 1.09001 * 109.46781 * 299.99963 * 9 7 2 33 33 H 0.96998 * 119.99890 * 335.00230 * 12 10 9 34 34 H 0.96998 * 119.99949 * 0.02562 * 15 13 12 35 35 H 1.09003 * 109.46506 * 299.99702 * 17 16 15 36 36 H 1.09002 * 109.47216 * 59.99569 * 17 16 15 37 37 H 1.08997 * 111.12608 * 270.23539 * 20 18 17 38 38 H 1.08990 * 111.12513 * 34.40748 * 20 18 17 39 39 H 1.09003 * 110.30611 * 204.64656 * 21 20 18 40 40 H 1.08993 * 110.31344 * 82.46953 * 21 20 18 41 41 H 1.09002 * 109.82855 * 238.76952 * 23 22 21 42 42 H 1.09000 * 109.90897 * 117.84015 * 23 22 21 43 43 H 1.08000 * 120.00616 * 359.70324 * 25 24 10 44 44 H 1.08001 * 119.99556 * 179.97438 * 26 25 24 45 45 H 1.07997 * 119.99649 * 179.97438 * 27 26 25 46 46 H 1.08008 * 119.99453 * 180.11401 * 28 27 26 47 47 H 1.08001 * 120.00350 * 359.97438 * 29 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 1 3.5873 -3.1754 -0.8411 12 7 3.6336 -3.2917 1.2525 13 6 3.5068 -4.6327 1.2999 14 8 3.7148 -5.2987 0.3042 15 7 3.1503 -5.2356 2.4514 16 8 3.0176 -6.6444 2.5014 17 6 2.6345 -7.1471 3.7831 18 6 2.5226 -8.6716 3.7204 19 1 3.4614 -9.1145 3.3875 20 6 2.0898 -9.2510 5.0948 21 6 1.3670 -10.5484 4.6525 22 8 0.6971 -10.2060 3.4288 23 6 1.3573 -9.0997 2.8027 24 6 5.5236 -2.6382 -0.1223 25 6 6.1162 -2.8809 -1.3474 26 6 7.4940 -2.8819 -1.4605 27 6 8.2790 -2.6424 -0.3483 28 6 7.6863 -2.3984 0.8765 29 6 6.3086 -2.3968 0.9896 30 1 -0.4850 0.8399 -0.0004 31 1 3.8746 -0.6800 0.8910 32 1 3.8752 -0.6804 -0.8889 33 1 3.4680 -2.7605 2.0470 34 1 2.9847 -4.7044 3.2459 35 1 3.3859 -6.8684 4.5220 36 1 1.6713 -6.7230 4.0667 37 1 2.9562 -9.4766 5.7165 38 1 1.4054 -8.5755 5.6079 39 1 0.6426 -10.8540 5.4075 40 1 2.0910 -11.3441 4.4776 41 1 0.6583 -8.2720 2.6821 42 1 1.7446 -9.4011 1.8294 43 1 5.5030 -3.0739 -2.2152 44 1 7.9570 -3.0719 -2.4176 45 1 9.3554 -2.6437 -0.4367 46 1 8.2997 -2.2095 1.7451 47 1 5.8456 -2.2065 1.9466 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191507962.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:17 Heat of formation + Delta-G solvation = -67.010548 kcal Electronic energy + Delta-G solvation = -28376.396697 eV Core-core repulsion = 24332.463079 eV Total energy + Delta-G solvation = -4043.933618 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.21555 -40.57454 -39.85752 -38.36073 -36.75139 -34.76041 -34.45766 -33.29999 -31.77819 -31.47937 -30.93060 -30.27876 -26.86583 -26.44317 -23.58487 -23.37853 -23.26688 -22.69330 -21.80028 -21.28546 -19.64760 -19.09611 -18.92040 -17.97135 -17.62705 -16.97737 -16.82891 -16.61779 -16.34362 -16.06871 -15.82539 -15.66480 -15.39681 -15.05254 -14.84451 -14.56777 -14.29035 -14.22195 -14.13640 -13.80163 -13.61214 -13.52008 -13.03108 -12.88528 -12.59628 -12.52383 -12.39258 -12.33925 -11.90979 -11.83397 -11.75739 -11.71624 -11.69783 -11.39393 -11.36780 -10.75305 -10.57651 -10.26228 -9.76824 -9.71474 -9.51406 -8.25045 -6.30079 0.43732 0.58912 0.67415 1.40650 1.41891 1.52641 2.16305 2.38542 2.75210 2.89127 3.03042 3.11952 3.29530 3.54664 3.76161 3.85244 3.94294 4.06056 4.14576 4.20396 4.23320 4.29578 4.34741 4.35988 4.40089 4.46590 4.60620 4.74424 4.75514 4.78700 4.82594 4.85918 4.92683 5.03999 5.14512 5.17033 5.21428 5.26127 5.54024 5.58267 5.62311 5.67294 5.67868 5.85420 5.96695 6.04667 6.20702 6.29624 6.77505 7.04834 7.34055 7.62491 8.91275 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009642 B = 0.002993 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2903.229348 B = 9353.396906 C =11522.161970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.011 3.989 3 Si 0.945 3.055 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.237 1.237 7 C -0.519 4.519 8 H 0.031 0.969 9 C -0.004 4.004 10 C 0.227 3.773 11 H 0.055 0.945 12 N -0.700 5.700 13 C 0.719 3.281 14 O -0.627 6.627 15 N -0.603 5.603 16 O -0.157 6.157 17 C 0.037 3.963 18 C -0.109 4.109 19 H 0.099 0.901 20 C -0.134 4.134 21 C 0.041 3.959 22 O -0.411 6.411 23 C 0.052 3.948 24 C -0.102 4.102 25 C -0.131 4.131 26 C -0.125 4.125 27 C -0.128 4.128 28 C -0.125 4.125 29 C -0.117 4.117 30 H 0.265 0.735 31 H 0.043 0.957 32 H 0.033 0.967 33 H 0.410 0.590 34 H 0.421 0.579 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.115 0.885 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.113 0.887 44 H 0.141 0.859 45 H 0.149 0.851 46 H 0.148 0.852 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.974 -11.925 13.843 23.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.186 4.186 3 Si 0.769 3.231 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.160 1.160 7 C -0.557 4.557 8 H 0.049 0.951 9 C -0.042 4.042 10 C 0.122 3.878 11 H 0.073 0.927 12 N -0.357 5.357 13 C 0.420 3.580 14 O -0.507 6.507 15 N -0.309 5.309 16 O -0.161 6.161 17 C -0.040 4.040 18 C -0.130 4.130 19 H 0.118 0.882 20 C -0.171 4.171 21 C -0.035 4.035 22 O -0.331 6.331 23 C -0.024 4.024 24 C -0.103 4.103 25 C -0.150 4.150 26 C -0.143 4.143 27 C -0.146 4.146 28 C -0.142 4.142 29 C -0.135 4.135 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.246 0.754 34 H 0.264 0.736 35 H 0.112 0.888 36 H 0.092 0.908 37 H 0.134 0.866 38 H 0.110 0.890 39 H 0.121 0.879 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.131 0.869 44 H 0.159 0.841 45 H 0.167 0.833 46 H 0.165 0.835 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 13.845 -12.672 12.722 22.674 hybrid contribution -0.761 1.132 0.417 1.426 sum 13.084 -11.540 13.139 21.840 Atomic orbital electron populations 1.70072 1.08370 1.28041 1.52486 1.25908 0.95426 1.03145 0.94162 0.85738 0.79852 0.78533 0.78977 1.20007 1.21301 1.16046 1.21207 0.91088 0.92942 1.50435 0.95081 1.19754 0.94519 0.91556 0.98361 1.19467 0.89348 0.93857 0.85177 0.92672 1.44679 1.73292 1.03057 1.14696 1.15523 0.77963 0.82390 0.82171 1.90864 1.59400 1.64684 1.35714 1.45811 1.76818 0.95759 1.12493 1.90556 1.92229 1.00629 1.32655 1.23221 1.01670 0.93804 0.85267 1.22674 0.99924 0.92822 0.97541 0.88241 1.23277 1.02415 0.96607 0.94832 1.23649 0.96999 0.97108 0.85711 1.88400 1.55073 1.51095 1.38542 1.23173 0.93903 0.89037 0.96330 1.20416 0.95387 0.99591 0.94908 1.21193 0.96122 1.00519 0.97121 1.21379 0.92790 0.99974 1.00160 1.21478 1.00998 0.99620 0.92498 1.21448 0.94215 0.99748 0.98824 1.21103 0.94363 0.99972 0.98092 0.92599 0.93884 0.94883 0.75421 0.73595 0.88815 0.90756 0.86648 0.88970 0.87922 0.91046 0.91938 0.92228 0.86927 0.84073 0.83297 0.83464 0.85384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.90 13.96 21.45 0.30 -57.60 16 2 C 0.01 0.60 5.47 84.65 0.46 1.06 16 3 Si 0.95 41.98 27.47 68.60 1.88 43.86 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.24 -9.43 6.54 99.48 0.65 -8.77 16 7 C -0.52 -28.27 9.39 25.60 0.24 -28.03 16 8 H 0.03 1.93 7.99 -2.91 -0.02 1.91 16 9 C 0.00 -0.18 3.56 29.85 0.11 -0.07 16 10 C 0.23 9.18 2.11 44.25 0.09 9.27 16 11 H 0.06 2.63 7.44 -2.39 -0.02 2.61 16 12 N -0.70 -25.26 4.04 -461.42 -1.86 -27.12 16 13 C 0.72 27.94 8.67 179.05 1.55 29.49 16 14 O -0.63 -30.58 16.41 13.38 0.22 -30.36 16 15 N -0.60 -17.82 6.39 -184.75 -1.18 -19.01 16 16 O -0.16 -4.61 10.95 -21.43 -0.23 -4.85 16 17 C 0.04 0.66 5.54 71.98 0.40 1.06 16 18 C -0.11 -1.81 3.29 -9.53 -0.03 -1.84 16 19 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 20 C -0.13 -1.36 6.62 32.06 0.21 -1.15 16 21 C 0.04 0.56 7.78 72.65 0.57 1.12 16 22 O -0.41 -9.48 11.36 -148.98 -1.69 -11.17 16 23 C 0.05 1.19 7.26 72.45 0.53 1.71 16 24 C -0.10 -3.56 4.91 -19.87 -0.10 -3.66 16 25 C -0.13 -4.36 9.67 22.27 0.22 -4.15 16 26 C -0.13 -3.32 10.05 22.27 0.22 -3.10 16 27 C -0.13 -2.95 10.05 22.27 0.22 -2.72 16 28 C -0.12 -2.98 10.05 22.27 0.22 -2.76 16 29 C -0.12 -3.42 9.32 22.27 0.21 -3.21 16 30 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 31 H 0.04 1.74 7.20 -2.39 -0.02 1.72 16 32 H 0.03 1.45 7.57 -2.39 -0.02 1.43 16 33 H 0.41 12.46 8.62 -92.71 -0.80 11.66 16 34 H 0.42 8.78 8.56 -92.71 -0.79 7.99 16 35 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.07 1.21 8.07 -2.39 -0.02 1.19 16 37 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.09 0.82 8.04 -2.39 -0.02 0.80 16 39 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.06 1.55 7.76 -2.39 -0.02 1.53 16 42 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.11 3.81 8.04 -2.91 -0.02 3.78 16 44 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 45 H 0.15 2.39 8.06 -2.91 -0.02 2.36 16 46 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 47 H 0.13 3.31 7.72 -2.91 -0.02 3.28 16 Total: -1.00 -80.43 393.40 1.89 -78.53 By element: Atomic # 1 Polarization: 35.35 SS G_CDS: -0.66 Total: 34.69 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: 5.12 Total: -6.98 kcal Atomic # 7 Polarization: -100.98 SS G_CDS: -2.74 Total: -103.73 kcal Atomic # 8 Polarization: -44.67 SS G_CDS: -1.71 Total: -46.37 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 1.88 Total: 43.86 kcal Total: -80.43 1.89 -78.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191507962.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.524 kcal (2) G-P(sol) polarization free energy of solvation -80.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds