Wall clock time and date at job start Tue Mar 31 2020 21:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 120.00123 * 2 1 4 4 H 1.48502 * 109.47137 * 269.99891 * 3 2 1 5 5 H 1.48505 * 109.47092 * 30.00201 * 3 2 1 6 6 H 1.48497 * 109.47122 * 150.00104 * 3 2 1 7 7 C 1.37876 * 119.99863 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00197 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00081 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47177 * 180.02562 * 9 7 2 11 11 C 1.46496 * 120.00200 * 263.84352 * 10 9 7 12 12 C 1.52997 * 109.47517 * 272.08424 * 11 10 9 13 13 F 1.39903 * 109.47091 * 59.99967 * 12 11 10 14 14 F 1.39897 * 109.47341 * 179.97438 * 12 11 10 15 15 F 1.39894 * 109.47169 * 299.99796 * 12 11 10 16 16 C 1.34780 * 119.99987 * 83.84783 * 10 9 7 17 17 O 1.21282 * 120.00153 * 183.81731 * 16 10 9 18 18 C 1.50706 * 120.00019 * 3.82276 * 16 10 9 19 19 C 1.53111 * 109.57413 * 69.65931 * 18 16 10 20 20 C 1.53039 * 109.27760 * 177.60192 * 19 18 16 21 21 N 1.46851 * 109.51514 * 300.80731 * 20 19 18 22 22 C 1.46905 * 110.99921 * 185.84157 * 21 20 19 23 23 C 1.53000 * 117.49806 * 248.62018 * 22 21 20 24 24 C 1.52992 * 117.49414 * 179.97438 * 22 21 20 25 25 C 1.46845 * 111.19986 * 61.74389 * 21 20 19 26 26 C 1.53037 * 109.52277 * 298.26531 * 25 21 20 27 27 H 0.96995 * 119.99468 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47328 * 59.99893 * 9 7 2 29 29 H 1.09003 * 109.47384 * 300.00502 * 9 7 2 30 30 H 1.09005 * 109.46767 * 32.08538 * 11 10 9 31 31 H 1.09004 * 109.47036 * 152.07744 * 11 10 9 32 32 H 1.09006 * 109.51677 * 309.48807 * 18 16 10 33 33 H 1.09000 * 109.51555 * 57.66016 * 19 18 16 34 34 H 1.09004 * 109.49956 * 297.53398 * 19 18 16 35 35 H 1.09001 * 109.46463 * 180.79362 * 20 19 18 36 36 H 1.09009 * 109.46015 * 60.81465 * 20 19 18 37 37 H 1.09002 * 115.54883 * 34.33192 * 22 21 20 38 38 H 1.09001 * 117.49621 * 0.02562 * 23 22 21 39 39 H 1.09002 * 117.49334 * 145.02243 * 23 22 21 40 40 H 1.08998 * 117.49976 * 214.97364 * 24 22 21 41 41 H 1.08997 * 117.50570 * 0.02562 * 24 22 21 42 42 H 1.09004 * 109.46041 * 58.27363 * 25 21 20 43 43 H 1.08988 * 109.46415 * 178.25078 * 25 21 20 44 44 H 1.09006 * 109.50411 * 179.12216 * 26 25 21 45 45 H 1.09002 * 109.49878 * 299.19166 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.5756 -4.2579 -1.2619 12 6 1.5843 -5.3811 -1.5726 13 9 0.2956 -4.8481 -1.6843 14 9 1.9398 -5.9969 -2.7774 15 9 1.6107 -6.3251 -0.5404 16 6 2.7360 -4.0436 1.1600 17 8 3.5757 -4.9187 1.1537 18 6 2.2884 -3.4382 2.4655 19 6 0.8482 -3.8652 2.7619 20 6 0.4213 -3.2962 4.1169 21 7 1.3232 -3.7931 5.1638 22 6 0.8621 -3.3794 6.4959 23 6 1.7125 -2.3564 7.2517 24 6 1.6965 -3.8195 7.7004 25 6 2.7048 -3.3558 4.9259 26 6 3.1997 -3.9263 3.5949 27 1 -0.4849 0.8400 -0.0004 28 1 0.6240 -2.5567 -0.8902 29 1 0.6246 -2.5571 0.8896 30 1 2.5550 -3.5224 -2.0661 31 1 3.5797 -4.6731 -1.1749 32 1 2.3402 -2.3514 2.3996 33 1 0.7893 -4.9533 2.7893 34 1 0.1880 -3.4839 1.9828 35 1 -0.5990 -3.6101 4.3375 36 1 0.4673 -2.2076 4.0844 37 1 -0.2191 -3.3287 6.6243 38 1 2.6139 -1.9901 6.7603 39 1 1.1907 -1.6323 7.8774 40 1 1.1643 -4.0575 8.6213 41 1 2.5877 -4.4156 7.5045 42 1 2.7399 -2.2670 4.8898 43 1 3.3430 -3.7132 5.7339 44 1 4.2198 -3.5889 3.4111 45 1 3.1785 -5.0154 3.6355 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192637559.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:08 Heat of formation + Delta-G solvation = -160.996297 kcal Electronic energy + Delta-G solvation = -31106.934152 eV Core-core repulsion = 26517.068265 eV Total energy + Delta-G solvation = -4589.865887 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -49.66737 -47.22484 -47.11133 -40.07092 -38.80681 -35.84329 -35.33522 -32.81885 -31.72740 -30.69351 -29.28359 -27.06006 -25.11301 -23.42454 -23.12100 -22.60637 -22.41890 -20.85024 -19.53984 -18.64414 -18.11118 -18.05276 -17.19740 -16.83995 -16.41202 -16.03562 -15.54667 -15.23460 -14.57065 -14.41607 -14.25414 -14.04683 -14.03422 -13.83777 -13.60701 -13.45973 -13.31521 -13.30247 -13.07512 -12.77156 -12.47691 -12.22410 -11.99416 -11.98342 -11.70527 -11.64873 -11.34267 -11.30300 -11.06646 -10.92192 -10.71294 -10.59929 -10.46106 -10.27189 -10.19646 -10.07074 -9.82387 -9.12850 -8.64064 -8.07131 -8.02815 -6.29175 -4.36862 2.93735 3.15357 3.23415 3.24244 3.37588 3.53171 3.66290 4.06671 4.22346 4.29517 4.45633 4.69007 4.78261 4.89393 4.93810 4.98398 5.04547 5.14548 5.23779 5.45706 5.48961 5.55327 5.59798 5.63616 5.70138 5.73804 5.85233 5.93667 6.01575 6.03987 6.07784 6.13065 6.23652 6.28756 6.45308 6.48208 6.74769 7.13403 7.19299 7.22795 7.29439 7.64613 7.92078 8.02295 8.64169 8.79340 9.30819 10.77656 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.008727 B = 0.005150 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3207.790490 B = 5435.169311 C = 7646.716153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.069 3.931 3 Si 0.895 3.105 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.225 3.775 10 N -0.596 5.596 11 C 0.079 3.921 12 C 0.431 3.569 13 F -0.180 7.180 14 F -0.191 7.191 15 F -0.181 7.181 16 C 0.531 3.469 17 O -0.558 6.558 18 C -0.102 4.102 19 C -0.111 4.111 20 C 0.062 3.938 21 N -0.507 5.507 22 C 0.027 3.973 23 C -0.223 4.223 24 C -0.174 4.174 25 C 0.053 3.947 26 C -0.095 4.095 27 H 0.267 0.733 28 H 0.043 0.957 29 H 0.056 0.944 30 H 0.121 0.879 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.044 0.956 37 H 0.118 0.882 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.040 0.960 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.209 -5.711 7.084 9.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.135 4.135 3 Si 0.723 3.277 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.582 4.582 8 H 0.080 0.920 9 C 0.106 3.894 10 N -0.327 5.327 11 C -0.048 4.048 12 C 0.375 3.625 13 F -0.161 7.161 14 F -0.172 7.172 15 F -0.162 7.162 16 C 0.321 3.679 17 O -0.437 6.437 18 C -0.123 4.123 19 C -0.149 4.149 20 C -0.065 4.065 21 N -0.229 5.229 22 C -0.083 4.083 23 C -0.262 4.262 24 C -0.212 4.212 25 C -0.074 4.074 26 C -0.133 4.133 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.139 0.861 31 H 0.135 0.865 32 H 0.130 0.870 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.094 0.906 36 H 0.062 0.938 37 H 0.135 0.865 38 H 0.117 0.883 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.058 0.942 43 H 0.092 0.908 44 H 0.087 0.913 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.429 -6.565 7.037 9.729 hybrid contribution 0.188 1.797 -0.186 1.817 sum 1.617 -4.767 6.851 8.502 Atomic orbital electron populations 1.69918 1.05949 1.27469 1.49049 1.24911 0.94839 0.99209 0.94574 0.86534 0.79853 0.82948 0.78409 1.20426 1.21013 1.19765 1.21444 0.93586 0.90306 1.52841 0.92003 1.19885 0.87476 0.82012 0.99992 1.48185 1.46179 1.34767 1.03576 1.22392 0.97350 0.93630 0.91469 1.21577 0.82594 0.84505 0.73844 1.93195 1.41285 1.85899 1.95746 1.93138 1.91862 1.84894 1.47329 1.93188 1.96548 1.67511 1.58974 1.20622 0.80329 0.81320 0.85665 1.90607 1.33107 1.32375 1.87649 1.21293 0.96369 1.03201 0.91461 1.21729 0.95007 1.01382 0.96739 1.22058 0.95899 0.97995 0.90540 1.61846 1.02450 1.58319 1.00290 1.22640 0.96976 1.01014 0.87675 1.23558 1.04151 0.92936 1.05601 1.23048 1.02980 0.97057 0.98122 1.22220 0.89320 0.97958 0.97935 1.21405 0.98145 1.01974 0.91767 0.92372 0.93870 0.92694 0.86107 0.86499 0.86996 0.91298 0.89132 0.90576 0.93809 0.86462 0.88256 0.89046 0.88757 0.88643 0.94151 0.90785 0.91251 0.90517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.10 13.29 55.43 0.74 -22.36 16 2 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 19.60 29.54 -169.99 -5.02 14.58 16 4 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.54 -13.13 8.60 -34.44 -0.30 -13.42 16 8 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 9 C 0.22 4.94 4.52 -5.19 -0.02 4.92 16 10 N -0.60 -11.71 2.39 -175.06 -0.42 -12.13 16 11 C 0.08 1.35 5.45 -4.05 -0.02 1.33 16 12 C 0.43 7.34 3.29 37.16 0.12 7.46 16 13 F -0.18 -3.26 16.14 2.25 0.04 -3.23 16 14 F -0.19 -3.00 17.32 2.25 0.04 -2.96 16 15 F -0.18 -3.34 16.69 2.25 0.04 -3.30 16 16 C 0.53 10.48 6.50 -10.98 -0.07 10.41 16 17 O -0.56 -11.88 15.29 5.56 0.08 -11.79 16 18 C -0.10 -1.80 1.77 -91.65 -0.16 -1.96 16 19 C -0.11 -1.82 5.09 -26.65 -0.14 -1.95 16 20 C 0.06 0.90 5.44 -3.83 -0.02 0.88 16 21 N -0.51 -6.92 4.88 -226.69 -1.11 -8.03 16 22 C 0.03 0.31 6.11 -67.71 -0.41 -0.10 16 23 C -0.22 -2.37 9.58 -26.71 -0.26 -2.63 16 24 C -0.17 -1.77 9.94 -26.71 -0.27 -2.03 16 25 C 0.05 0.73 4.12 -3.83 -0.02 0.71 16 26 C -0.09 -1.49 4.76 -26.65 -0.13 -1.61 16 27 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 28 H 0.04 1.01 7.21 -51.93 -0.37 0.64 16 29 H 0.06 1.23 4.26 -51.93 -0.22 1.01 16 30 H 0.12 1.91 8.09 -51.93 -0.42 1.49 16 31 H 0.12 1.92 7.31 -51.93 -0.38 1.54 16 32 H 0.11 2.16 7.08 -51.93 -0.37 1.79 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.09 1.60 5.36 -51.93 -0.28 1.32 16 35 H 0.08 1.00 8.07 -51.93 -0.42 0.58 16 36 H 0.04 0.68 8.14 -51.92 -0.42 0.25 16 37 H 0.12 1.25 8.04 -51.93 -0.42 0.84 16 38 H 0.10 1.11 5.97 -51.93 -0.31 0.80 16 39 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.10 1.00 7.23 -51.93 -0.38 0.63 16 42 H 0.04 0.57 7.12 -51.93 -0.37 0.20 16 43 H 0.07 0.91 6.43 -51.94 -0.33 0.58 16 44 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.08 1.28 7.92 -51.93 -0.41 0.87 16 LS Contribution 364.42 15.07 5.49 5.49 Total: -1.00 -26.78 364.42 -8.24 -35.02 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -6.34 Total: 5.10 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -1.78 Total: 3.60 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: -0.79 Total: -42.52 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.08 Total: -11.79 kcal Atomic # 9 Polarization: -9.60 SS G_CDS: 0.11 Total: -9.49 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -26.78 -8.24 -35.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192637559.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.974 kcal (2) G-P(sol) polarization free energy of solvation -26.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds