Wall clock time and date at job start Tue Mar 31 2020 21:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 120.00123 * 2 1 4 4 H 1.48502 * 109.47137 * 269.99891 * 3 2 1 5 5 H 1.48505 * 109.47092 * 30.00201 * 3 2 1 6 6 H 1.48497 * 109.47122 * 150.00104 * 3 2 1 7 7 C 1.37876 * 119.99863 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00197 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00081 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47177 * 180.02562 * 9 7 2 11 11 C 1.46496 * 120.00200 * 263.84352 * 10 9 7 12 12 C 1.52997 * 109.47517 * 272.08424 * 11 10 9 13 13 F 1.39903 * 109.47091 * 59.99967 * 12 11 10 14 14 F 1.39897 * 109.47341 * 179.97438 * 12 11 10 15 15 F 1.39894 * 109.47169 * 299.99796 * 12 11 10 16 16 C 1.34780 * 119.99987 * 83.84783 * 10 9 7 17 17 O 1.21282 * 120.00153 * 183.81731 * 16 10 9 18 18 C 1.50706 * 120.00019 * 3.82276 * 16 10 9 19 19 C 1.53111 * 109.57413 * 69.65931 * 18 16 10 20 20 C 1.53039 * 109.27760 * 177.60192 * 19 18 16 21 21 N 1.46851 * 109.51514 * 300.80731 * 20 19 18 22 22 C 1.46905 * 110.99921 * 185.84157 * 21 20 19 23 23 C 1.53000 * 117.49806 * 248.62018 * 22 21 20 24 24 C 1.52992 * 117.49414 * 179.97438 * 22 21 20 25 25 C 1.46845 * 111.19986 * 61.74389 * 21 20 19 26 26 C 1.53037 * 109.52277 * 298.26531 * 25 21 20 27 27 H 0.96995 * 119.99468 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47328 * 59.99893 * 9 7 2 29 29 H 1.09003 * 109.47384 * 300.00502 * 9 7 2 30 30 H 1.09005 * 109.46767 * 32.08538 * 11 10 9 31 31 H 1.09004 * 109.47036 * 152.07744 * 11 10 9 32 32 H 1.09006 * 109.51677 * 309.48807 * 18 16 10 33 33 H 1.09000 * 109.51555 * 57.66016 * 19 18 16 34 34 H 1.09004 * 109.49956 * 297.53398 * 19 18 16 35 35 H 1.09001 * 109.46463 * 180.79362 * 20 19 18 36 36 H 1.09009 * 109.46015 * 60.81465 * 20 19 18 37 37 H 1.09002 * 115.54883 * 34.33192 * 22 21 20 38 38 H 1.09001 * 117.49621 * 0.02562 * 23 22 21 39 39 H 1.09002 * 117.49334 * 145.02243 * 23 22 21 40 40 H 1.08998 * 117.49976 * 214.97364 * 24 22 21 41 41 H 1.08997 * 117.50570 * 0.02562 * 24 22 21 42 42 H 1.09004 * 109.46041 * 58.27363 * 25 21 20 43 43 H 1.08988 * 109.46415 * 178.25078 * 25 21 20 44 44 H 1.09006 * 109.50411 * 179.12216 * 26 25 21 45 45 H 1.09002 * 109.49878 * 299.19166 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.5756 -4.2579 -1.2619 12 6 1.5843 -5.3811 -1.5726 13 9 0.2956 -4.8481 -1.6843 14 9 1.9398 -5.9969 -2.7774 15 9 1.6107 -6.3251 -0.5404 16 6 2.7360 -4.0436 1.1600 17 8 3.5757 -4.9187 1.1537 18 6 2.2884 -3.4382 2.4655 19 6 0.8482 -3.8652 2.7619 20 6 0.4213 -3.2962 4.1169 21 7 1.3232 -3.7931 5.1638 22 6 0.8621 -3.3794 6.4959 23 6 1.7125 -2.3564 7.2517 24 6 1.6965 -3.8195 7.7004 25 6 2.7048 -3.3558 4.9259 26 6 3.1997 -3.9263 3.5949 27 1 -0.4849 0.8400 -0.0004 28 1 0.6240 -2.5567 -0.8902 29 1 0.6246 -2.5571 0.8896 30 1 2.5550 -3.5224 -2.0661 31 1 3.5797 -4.6731 -1.1749 32 1 2.3402 -2.3514 2.3996 33 1 0.7893 -4.9533 2.7893 34 1 0.1880 -3.4839 1.9828 35 1 -0.5990 -3.6101 4.3375 36 1 0.4673 -2.2076 4.0844 37 1 -0.2191 -3.3287 6.6243 38 1 2.6139 -1.9901 6.7603 39 1 1.1907 -1.6323 7.8774 40 1 1.1643 -4.0575 8.6213 41 1 2.5877 -4.4156 7.5045 42 1 2.7399 -2.2670 4.8898 43 1 3.3430 -3.7132 5.7339 44 1 4.2198 -3.5889 3.4111 45 1 3.1785 -5.0154 3.6355 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192637559.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:07 Heat of formation + Delta-G solvation = -174.606371 kcal Electronic energy + Delta-G solvation = -31107.524329 eV Core-core repulsion = 26517.068265 eV Total energy + Delta-G solvation = -4590.456064 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -51.08317 -48.60628 -48.56998 -41.48006 -40.01564 -37.03517 -36.92760 -34.66421 -32.96223 -31.93995 -30.77423 -28.81374 -26.41294 -25.00492 -24.59852 -23.91518 -23.25719 -21.98424 -20.79292 -20.05474 -19.53994 -19.48658 -18.85765 -18.31600 -17.82430 -17.50297 -16.93094 -16.37734 -16.25275 -15.93682 -15.51866 -15.47849 -15.33828 -15.06632 -15.02077 -14.77759 -14.74528 -14.70705 -14.58004 -14.14401 -13.97069 -13.62026 -13.46831 -13.30990 -13.08210 -12.92727 -12.85248 -12.60373 -12.52526 -12.40209 -12.07348 -11.92651 -11.81703 -11.64737 -11.50545 -11.47068 -11.11036 -10.73375 -10.50161 -9.74475 -9.06816 -8.20535 -6.33361 1.41389 1.43051 1.45413 1.52432 1.83822 2.03690 2.41428 2.70075 2.86585 3.04598 3.11281 3.14689 3.29379 3.57434 3.77232 3.81464 3.97090 4.09800 4.10589 4.17410 4.27630 4.30179 4.35631 4.42963 4.56411 4.65274 4.74568 4.78902 4.78962 4.81971 4.87921 4.96824 5.03805 5.13385 5.14502 5.28529 5.35780 5.40494 5.57961 5.73664 6.03999 6.10195 6.17661 6.35778 6.76983 7.15306 7.37833 8.85659 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.008727 B = 0.005150 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3207.790490 B = 5435.169311 C = 7646.716153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.028 3.972 3 Si 0.950 3.050 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.546 4.546 8 H 0.055 0.945 9 C 0.240 3.760 10 N -0.599 5.599 11 C 0.075 3.925 12 C 0.437 3.563 13 F -0.187 7.187 14 F -0.180 7.180 15 F -0.189 7.189 16 C 0.527 3.473 17 O -0.574 6.574 18 C -0.099 4.099 19 C -0.103 4.103 20 C 0.069 3.931 21 N -0.513 5.513 22 C 0.008 3.992 23 C -0.221 4.221 24 C -0.161 4.161 25 C 0.060 3.940 26 C -0.088 4.088 27 H 0.268 0.732 28 H 0.028 0.972 29 H 0.052 0.948 30 H 0.135 0.865 31 H 0.127 0.873 32 H 0.094 0.906 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.031 0.969 37 H 0.127 0.873 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.113 0.887 41 H 0.092 0.908 42 H 0.037 0.963 43 H 0.091 0.909 44 H 0.068 0.932 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.622 -5.548 8.214 10.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.173 4.173 3 Si 0.776 3.224 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.584 4.584 8 H 0.074 0.926 9 C 0.120 3.880 10 N -0.329 5.329 11 C -0.052 4.052 12 C 0.381 3.619 13 F -0.168 7.168 14 F -0.161 7.161 15 F -0.170 7.170 16 C 0.317 3.683 17 O -0.454 6.454 18 C -0.120 4.120 19 C -0.141 4.141 20 C -0.058 4.058 21 N -0.235 5.235 22 C -0.101 4.101 23 C -0.260 4.260 24 C -0.199 4.199 25 C -0.067 4.067 26 C -0.126 4.126 27 H 0.077 0.923 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.153 0.847 31 H 0.145 0.855 32 H 0.112 0.888 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.110 0.890 36 H 0.050 0.950 37 H 0.145 0.855 38 H 0.111 0.889 39 H 0.121 0.879 40 H 0.131 0.869 41 H 0.111 0.889 42 H 0.055 0.945 43 H 0.109 0.891 44 H 0.087 0.913 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.851 -6.411 8.164 10.545 hybrid contribution 0.071 1.694 -0.565 1.787 sum 1.922 -4.717 7.599 9.148 Atomic orbital electron populations 1.70002 1.07061 1.28134 1.50101 1.25531 0.95443 1.01881 0.94415 0.85674 0.78736 0.79685 0.78310 1.20194 1.20855 1.19561 1.21614 0.93329 0.91298 1.52193 0.92646 1.19563 0.87390 0.82063 0.98992 1.48131 1.45803 1.34385 1.04630 1.22575 0.97767 0.93956 0.90864 1.21445 0.82170 0.84269 0.73968 1.93184 1.41847 1.86018 1.95788 1.93158 1.91714 1.84673 1.46572 1.93173 1.96557 1.67819 1.59500 1.20996 0.79956 0.81083 0.86254 1.90590 1.33787 1.33142 1.87915 1.21282 0.97601 1.01844 0.91255 1.21619 0.93854 1.01034 0.97581 1.21959 0.96940 0.97053 0.89875 1.61848 1.02104 1.58481 1.01090 1.22787 0.97858 1.02570 0.86897 1.23579 1.03598 0.93504 1.05345 1.23116 1.02446 0.96438 0.97915 1.22156 0.89841 0.97589 0.97161 1.21345 0.97758 1.01282 0.92216 0.92325 0.95409 0.93088 0.84749 0.85516 0.88775 0.91606 0.90801 0.89033 0.95023 0.85480 0.88941 0.87883 0.86880 0.88914 0.94507 0.89079 0.91349 0.91459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.81 13.29 21.45 0.28 -47.52 16 2 C 0.03 1.41 5.46 84.65 0.46 1.87 16 3 Si 0.95 39.87 29.54 68.60 2.03 41.90 16 4 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 7 C -0.55 -26.44 8.60 25.60 0.22 -26.22 16 8 H 0.06 2.72 7.81 -2.91 -0.02 2.70 16 9 C 0.24 10.65 4.52 85.63 0.39 11.04 16 10 N -0.60 -23.62 2.39 -826.14 -1.98 -25.60 16 11 C 0.07 2.52 5.45 86.38 0.47 2.99 16 12 C 0.44 14.66 3.29 71.98 0.24 14.89 16 13 F -0.19 -6.75 16.14 44.97 0.73 -6.03 16 14 F -0.18 -5.45 17.32 44.97 0.78 -4.67 16 15 F -0.19 -6.90 16.69 44.97 0.75 -6.15 16 16 C 0.53 20.88 6.50 87.66 0.57 21.45 16 17 O -0.57 -24.33 15.29 -3.04 -0.05 -24.38 16 18 C -0.10 -3.51 1.77 -11.46 -0.02 -3.53 16 19 C -0.10 -3.40 5.09 30.64 0.16 -3.25 16 20 C 0.07 1.97 5.44 86.33 0.47 2.44 16 21 N -0.51 -13.38 4.88 -871.10 -4.25 -17.62 16 22 C 0.01 0.17 6.11 44.91 0.27 0.44 16 23 C -0.22 -4.22 9.58 30.61 0.29 -3.93 16 24 C -0.16 -2.85 9.94 30.61 0.30 -2.55 16 25 C 0.06 1.58 4.12 86.33 0.36 1.93 16 26 C -0.09 -2.73 4.76 30.64 0.15 -2.58 16 27 H 0.27 13.37 8.31 -92.71 -0.77 12.60 16 28 H 0.03 1.33 7.21 -2.39 -0.02 1.31 16 29 H 0.05 2.34 4.26 -2.39 -0.01 2.33 16 30 H 0.13 4.14 8.09 -2.38 -0.02 4.13 16 31 H 0.13 4.05 7.31 -2.39 -0.02 4.03 16 32 H 0.09 3.70 7.08 -2.38 -0.02 3.69 16 33 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.07 2.68 5.36 -2.38 -0.01 2.67 16 35 H 0.09 2.30 8.07 -2.39 -0.02 2.28 16 36 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16 37 H 0.13 2.44 8.04 -2.39 -0.02 2.42 16 38 H 0.09 1.90 5.97 -2.39 -0.01 1.89 16 39 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.09 1.71 7.23 -2.39 -0.02 1.69 16 42 H 0.04 1.00 7.12 -2.38 -0.02 0.98 16 43 H 0.09 2.09 6.43 -2.39 -0.02 2.07 16 44 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 45 H 0.07 2.22 7.92 -2.39 -0.02 2.20 16 Total: -1.00 -55.48 364.42 3.64 -51.84 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: 1.02 Total: 23.21 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: 4.33 Total: 15.02 kcal Atomic # 7 Polarization: -84.81 SS G_CDS: -5.94 Total: -90.74 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.05 Total: -24.38 kcal Atomic # 9 Polarization: -19.10 SS G_CDS: 2.26 Total: -16.85 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.90 kcal Total: -55.48 3.64 -51.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192637559.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.764 kcal (2) G-P(sol) polarization free energy of solvation -55.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds