Wall clock time and date at job start Wed Apr 1 2020 00:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86801 * 119.99786 * 2 1 4 4 H 1.48493 * 109.47342 * 270.00289 * 3 2 1 5 5 H 1.48495 * 109.46950 * 30.00653 * 3 2 1 6 6 H 1.48503 * 109.46719 * 150.00282 * 3 2 1 7 7 C 1.38655 * 119.99917 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99400 * 179.97438 * 7 2 1 9 9 O 1.34825 * 120.00287 * 359.97438 * 7 2 1 10 10 C 1.35751 * 117.00369 * 185.06530 * 9 7 2 11 11 C 1.38878 * 120.06632 * 354.47748 * 10 9 7 12 12 C 1.38096 * 119.93166 * 179.97438 * 11 10 9 13 13 C 1.38298 * 120.06798 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.93042 * 179.97438 * 13 12 11 15 15 N 1.46497 * 109.46809 * 90.00471 * 14 13 12 16 16 C 1.34777 * 120.00293 * 179.97438 * 15 14 13 17 17 O 1.21593 * 119.99748 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00661 * 179.97438 * 16 15 14 19 19 C 1.46497 * 120.00395 * 180.02562 * 18 16 15 20 20 C 1.53003 * 109.47108 * 180.02562 * 19 18 16 21 21 H 1.08991 * 109.47932 * 60.02301 * 20 19 18 22 22 C 1.53097 * 109.47668 * 180.02562 * 20 19 18 23 23 C 1.53176 * 109.15804 * 177.59168 * 22 20 19 24 24 C 1.53177 * 109.03832 * 303.01480 * 23 22 20 25 25 C 1.53097 * 109.15965 * 56.98306 * 24 23 22 26 26 O 1.42896 * 109.41403 * 302.39178 * 25 24 23 27 27 C 1.38306 * 120.13891 * 0.02717 * 13 12 11 28 28 C 1.38098 * 120.06699 * 359.97372 * 27 13 12 29 29 H 0.96997 * 120.00240 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.03369 * 0.25018 * 11 10 9 31 31 H 1.08001 * 119.97007 * 179.97438 * 12 11 10 32 32 H 1.09004 * 109.46925 * 210.00057 * 14 13 12 33 33 H 1.08995 * 109.47292 * 330.00626 * 14 13 12 34 34 H 0.97003 * 120.00273 * 0.02562 * 15 14 13 35 35 H 0.97003 * 119.99906 * 0.02562 * 18 16 15 36 36 H 1.09007 * 109.47401 * 300.00254 * 19 18 16 37 37 H 1.09000 * 109.46873 * 60.00111 * 19 18 16 38 38 H 1.09001 * 109.52239 * 297.49267 * 22 20 19 39 39 H 1.08998 * 109.52173 * 57.68611 * 22 20 19 40 40 H 1.09001 * 109.54104 * 183.15029 * 23 22 20 41 41 H 1.09001 * 109.54660 * 62.88920 * 23 22 20 42 42 H 1.09001 * 109.52367 * 297.07622 * 24 23 22 43 43 H 1.08997 * 109.57563 * 176.91893 * 24 23 22 44 44 H 1.09004 * 109.47802 * 182.40838 * 25 24 23 45 45 H 1.08999 * 109.49017 * 62.38197 * 25 24 23 46 46 H 1.08002 * 119.96402 * 179.97438 * 27 13 12 47 47 H 1.07998 * 120.03541 * 179.97438 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4969 2.0465 -1.4000 5 1 1.4470 2.6526 0.7002 6 1 3.5471 1.4401 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0700 -3.5046 0.1057 11 6 3.4572 -3.4395 0.0927 12 6 4.2024 -4.5970 0.2015 13 6 3.5687 -5.8201 0.3239 14 6 4.3851 -7.0814 0.4418 15 7 4.6572 -7.3566 1.8547 16 6 5.3758 -8.4420 2.2037 17 8 5.7988 -9.1927 1.3458 18 7 5.6266 -8.6949 3.5035 19 6 6.4083 -9.8745 3.8828 20 6 6.5454 -9.9274 5.4057 21 1 5.5555 -9.9872 5.8579 22 6 7.3628 -11.1597 5.8022 23 6 7.5467 -11.1730 7.3228 24 6 8.2179 -9.8662 7.7564 25 6 7.3675 -8.6838 7.2844 26 8 7.2097 -8.7487 5.8656 27 6 2.1874 -5.8884 0.3371 28 6 1.4366 -4.7344 0.2287 29 1 -0.4850 0.8400 0.0004 30 1 3.9526 -2.4841 0.0020 31 1 5.2812 -4.5471 0.1910 32 1 3.8309 -7.9146 0.0096 33 1 5.3271 -6.9558 -0.0918 34 1 4.3195 -6.7579 2.5393 35 1 5.2896 -8.0959 4.1880 36 1 5.9019 -10.7740 3.5325 37 1 7.3982 -9.8152 3.4303 38 1 6.8359 -12.0618 5.4911 39 1 8.3384 -11.1210 5.3176 40 1 8.1751 -12.0172 7.6067 41 1 6.5742 -11.2616 7.8070 42 1 9.2108 -9.8014 7.3113 43 1 8.3036 -9.8425 8.8427 44 1 7.8621 -7.7503 7.5528 45 1 6.3884 -8.7267 7.7614 46 1 1.6955 -6.8451 0.4324 47 1 0.3580 -4.7883 0.2387 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263949716.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:37 Heat of formation + Delta-G solvation = -92.258279 kcal Electronic energy + Delta-G solvation = -27315.219605 eV Core-core repulsion = 23270.191163 eV Total energy + Delta-G solvation = -4045.028442 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.23445 -39.55841 -39.01356 -36.89966 -35.09177 -34.26144 -34.08309 -32.38372 -31.86520 -30.26330 -29.77768 -27.31469 -25.78041 -24.81177 -24.24031 -22.51942 -22.03210 -21.06999 -20.59675 -20.51319 -18.43177 -18.04699 -17.08897 -16.91761 -16.52843 -16.22384 -15.43947 -15.09622 -15.01114 -14.69686 -14.65567 -14.50779 -14.41735 -13.85089 -13.69655 -13.49911 -13.41576 -13.20620 -13.08918 -12.76769 -12.67049 -12.50319 -12.03074 -11.76170 -11.66711 -11.54998 -11.37845 -11.18870 -10.94890 -10.78797 -10.76001 -10.66160 -10.48324 -10.17151 -9.88622 -9.41189 -9.25455 -8.90339 -8.69497 -8.26371 -7.31384 -6.52030 -4.10847 2.05323 2.15123 2.87037 3.09607 3.10226 3.14945 3.26164 3.34694 3.91258 4.18183 4.28003 4.35397 4.39552 4.52228 4.63572 4.68679 4.73081 4.96666 5.03046 5.11173 5.18337 5.23352 5.26643 5.29965 5.34737 5.45357 5.48104 5.52547 5.57573 5.64513 5.69777 5.81305 5.85171 5.97312 6.14138 6.37560 6.39382 6.61134 6.65946 6.79154 6.82496 6.93435 7.03047 7.18019 7.30286 7.36829 7.73496 7.92822 8.11071 8.68925 8.93405 9.61876 10.65533 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016298 B = 0.001837 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.587740 B =15241.245248 C =16333.995070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.393 4.393 8 H 0.093 0.907 9 O -0.174 6.174 10 C 0.160 3.840 11 C -0.237 4.237 12 C -0.050 4.050 13 C -0.213 4.213 14 C 0.198 3.802 15 N -0.738 5.738 16 C 0.702 3.298 17 O -0.600 6.600 18 N -0.745 5.745 19 C 0.150 3.850 20 C 0.078 3.922 21 H 0.065 0.935 22 C -0.148 4.148 23 C -0.122 4.122 24 C -0.158 4.158 25 C 0.060 3.940 26 O -0.374 6.374 27 C -0.054 4.054 28 C -0.196 4.196 29 H 0.271 0.729 30 H 0.128 0.872 31 H 0.108 0.892 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.397 0.603 35 H 0.399 0.601 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.095 0.905 45 H 0.050 0.950 46 H 0.113 0.887 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.152 -18.882 14.767 27.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.469 4.469 8 H 0.111 0.889 9 O -0.077 6.077 10 C 0.106 3.894 11 C -0.257 4.257 12 C -0.069 4.069 13 C -0.215 4.215 14 C 0.075 3.925 15 N -0.393 5.393 16 C 0.401 3.599 17 O -0.479 6.479 18 N -0.401 5.401 19 C 0.025 3.975 20 C 0.020 3.980 21 H 0.083 0.917 22 C -0.187 4.187 23 C -0.159 4.159 24 C -0.196 4.196 25 C -0.017 4.017 26 O -0.293 6.293 27 C -0.073 4.073 28 C -0.215 4.215 29 H 0.081 0.919 30 H 0.146 0.854 31 H 0.126 0.874 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.231 0.769 35 H 0.233 0.767 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.113 0.887 45 H 0.069 0.931 46 H 0.131 0.869 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 13.166 -19.207 13.792 27.064 hybrid contribution 0.117 1.236 0.912 1.541 sum 13.283 -17.970 14.704 26.750 Atomic orbital electron populations 1.70034 1.05997 1.27835 1.45547 1.25316 0.95862 0.98924 0.96387 0.85695 0.78931 0.79936 0.78797 1.19803 1.20206 1.19137 1.21353 0.91871 0.80732 1.52954 0.88925 1.83976 1.34496 1.11555 1.77639 1.19438 0.90322 0.88045 0.91626 1.21162 0.93770 0.98958 1.11764 1.20657 0.98430 0.91619 0.96171 1.19238 0.93554 0.93685 1.14981 1.19823 0.98231 0.94525 0.79902 1.45487 1.57460 1.26730 1.09587 1.16002 0.79333 0.81912 0.82610 1.90903 1.57749 1.50082 1.49171 1.44961 1.59350 1.29513 1.06299 1.21169 0.96610 0.88267 0.91450 1.22373 0.95447 0.85940 0.94222 0.91710 1.22130 1.01721 0.98106 0.96697 1.21575 1.01125 0.97836 0.95395 1.22206 1.00411 0.95479 1.01489 1.22588 0.98955 0.98765 0.81353 1.88001 1.79112 1.40457 1.21739 1.20540 0.92785 0.96814 0.97135 1.20212 0.99653 0.90275 1.11376 0.91905 0.85433 0.87355 0.91763 0.91794 0.76881 0.76716 0.90287 0.90957 0.90394 0.90514 0.91236 0.91732 0.90935 0.90861 0.88688 0.93126 0.86946 0.86402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.73 13.67 55.48 0.76 -23.97 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.10 29.55 -169.99 -5.02 15.08 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.39 -10.72 9.49 30.89 0.29 -10.43 16 8 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 9 O -0.17 -4.84 9.76 0.06 0.00 -4.84 16 10 C 0.16 3.74 6.65 -39.11 -0.26 3.48 16 11 C -0.24 -4.96 9.17 -39.40 -0.36 -5.32 16 12 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 13 C -0.21 -3.47 5.25 -104.57 -0.55 -4.02 16 14 C 0.20 2.89 5.80 -5.19 -0.03 2.86 16 15 N -0.74 -9.75 5.55 -66.42 -0.37 -10.12 16 16 C 0.70 9.95 8.57 -86.92 -0.74 9.20 16 17 O -0.60 -10.75 16.34 5.28 0.09 -10.66 16 18 N -0.74 -8.00 5.45 -65.22 -0.36 -8.35 16 19 C 0.15 1.40 5.37 -4.04 -0.02 1.38 16 20 C 0.08 0.56 2.73 -26.68 -0.07 0.49 16 21 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 22 C -0.15 -0.85 5.42 -26.59 -0.14 -1.00 16 23 C -0.12 -0.60 6.03 -26.55 -0.16 -0.76 16 24 C -0.16 -0.81 6.14 -26.59 -0.16 -0.98 16 25 C 0.06 0.37 6.84 37.21 0.25 0.63 16 26 O -0.37 -3.23 10.15 -35.23 -0.36 -3.59 16 27 C -0.05 -0.91 9.69 -39.61 -0.38 -1.30 16 28 C -0.20 -3.96 9.99 -39.40 -0.39 -4.36 16 29 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.13 2.68 5.64 -52.48 -0.30 2.39 16 31 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 32 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 33 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 34 H 0.40 4.65 8.48 -40.82 -0.35 4.31 16 35 H 0.40 3.56 8.36 -40.82 -0.34 3.22 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 46 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 47 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 LS Contribution 390.00 15.07 5.88 5.88 Total: -1.00 -32.59 390.00 -9.75 -42.34 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -7.15 Total: 8.63 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -3.22 Total: -10.40 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: 0.03 Total: -42.44 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.27 Total: -19.09 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.59 -9.75 -42.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263949716.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.922 kcal (2) G-P(sol) polarization free energy of solvation -32.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds