Wall clock time and date at job start Wed Apr 1 2020 00:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86801 * 119.99786 * 2 1 4 4 H 1.48493 * 109.47342 * 270.00289 * 3 2 1 5 5 H 1.48495 * 109.46950 * 30.00653 * 3 2 1 6 6 H 1.48503 * 109.46719 * 150.00282 * 3 2 1 7 7 C 1.38655 * 119.99917 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99400 * 179.97438 * 7 2 1 9 9 O 1.34825 * 120.00287 * 359.97438 * 7 2 1 10 10 C 1.35751 * 117.00369 * 185.06530 * 9 7 2 11 11 C 1.38878 * 120.06632 * 354.47748 * 10 9 7 12 12 C 1.38096 * 119.93166 * 179.97438 * 11 10 9 13 13 C 1.38298 * 120.06798 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.93042 * 179.97438 * 13 12 11 15 15 N 1.46497 * 109.46809 * 90.00471 * 14 13 12 16 16 C 1.34777 * 120.00293 * 179.97438 * 15 14 13 17 17 O 1.21593 * 119.99748 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00661 * 179.97438 * 16 15 14 19 19 C 1.46497 * 120.00395 * 180.02562 * 18 16 15 20 20 C 1.53003 * 109.47108 * 180.02562 * 19 18 16 21 21 H 1.08991 * 109.47932 * 60.02301 * 20 19 18 22 22 C 1.53097 * 109.47668 * 180.02562 * 20 19 18 23 23 C 1.53176 * 109.15804 * 177.59168 * 22 20 19 24 24 C 1.53177 * 109.03832 * 303.01480 * 23 22 20 25 25 C 1.53097 * 109.15965 * 56.98306 * 24 23 22 26 26 O 1.42896 * 109.41403 * 302.39178 * 25 24 23 27 27 C 1.38306 * 120.13891 * 0.02717 * 13 12 11 28 28 C 1.38098 * 120.06699 * 359.97372 * 27 13 12 29 29 H 0.96997 * 120.00240 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.03369 * 0.25018 * 11 10 9 31 31 H 1.08001 * 119.97007 * 179.97438 * 12 11 10 32 32 H 1.09004 * 109.46925 * 210.00057 * 14 13 12 33 33 H 1.08995 * 109.47292 * 330.00626 * 14 13 12 34 34 H 0.97003 * 120.00273 * 0.02562 * 15 14 13 35 35 H 0.97003 * 119.99906 * 0.02562 * 18 16 15 36 36 H 1.09007 * 109.47401 * 300.00254 * 19 18 16 37 37 H 1.09000 * 109.46873 * 60.00111 * 19 18 16 38 38 H 1.09001 * 109.52239 * 297.49267 * 22 20 19 39 39 H 1.08998 * 109.52173 * 57.68611 * 22 20 19 40 40 H 1.09001 * 109.54104 * 183.15029 * 23 22 20 41 41 H 1.09001 * 109.54660 * 62.88920 * 23 22 20 42 42 H 1.09001 * 109.52367 * 297.07622 * 24 23 22 43 43 H 1.08997 * 109.57563 * 176.91893 * 24 23 22 44 44 H 1.09004 * 109.47802 * 182.40838 * 25 24 23 45 45 H 1.08999 * 109.49017 * 62.38197 * 25 24 23 46 46 H 1.08002 * 119.96402 * 179.97438 * 27 13 12 47 47 H 1.07998 * 120.03541 * 179.97438 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4969 2.0465 -1.4000 5 1 1.4470 2.6526 0.7002 6 1 3.5471 1.4401 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0700 -3.5046 0.1057 11 6 3.4572 -3.4395 0.0927 12 6 4.2024 -4.5970 0.2015 13 6 3.5687 -5.8201 0.3239 14 6 4.3851 -7.0814 0.4418 15 7 4.6572 -7.3566 1.8547 16 6 5.3758 -8.4420 2.2037 17 8 5.7988 -9.1927 1.3458 18 7 5.6266 -8.6949 3.5035 19 6 6.4083 -9.8745 3.8828 20 6 6.5454 -9.9274 5.4057 21 1 5.5555 -9.9872 5.8579 22 6 7.3628 -11.1597 5.8022 23 6 7.5467 -11.1730 7.3228 24 6 8.2179 -9.8662 7.7564 25 6 7.3675 -8.6838 7.2844 26 8 7.2097 -8.7487 5.8656 27 6 2.1874 -5.8884 0.3371 28 6 1.4366 -4.7344 0.2287 29 1 -0.4850 0.8400 0.0004 30 1 3.9526 -2.4841 0.0020 31 1 5.2812 -4.5471 0.1910 32 1 3.8309 -7.9146 0.0096 33 1 5.3271 -6.9558 -0.0918 34 1 4.3195 -6.7579 2.5393 35 1 5.2896 -8.0959 4.1880 36 1 5.9019 -10.7740 3.5325 37 1 7.3982 -9.8152 3.4303 38 1 6.8359 -12.0618 5.4911 39 1 8.3384 -11.1210 5.3176 40 1 8.1751 -12.0172 7.6067 41 1 6.5742 -11.2616 7.8070 42 1 9.2108 -9.8014 7.3113 43 1 8.3036 -9.8425 8.8427 44 1 7.8621 -7.7503 7.5528 45 1 6.3884 -8.7267 7.7614 46 1 1.6955 -6.8451 0.4324 47 1 0.3580 -4.7883 0.2387 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263949716.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:25 Heat of formation + Delta-G solvation = -114.677395 kcal Electronic energy + Delta-G solvation = -27316.191771 eV Core-core repulsion = 23270.191163 eV Total energy + Delta-G solvation = -4046.000608 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 13.29 seconds Orbital eigenvalues (eV) -41.20661 -40.74809 -40.19338 -38.52812 -36.02715 -35.53334 -34.56096 -34.27301 -32.61785 -31.82631 -31.13839 -28.16590 -27.47051 -26.02813 -24.93618 -23.63681 -23.17310 -22.18474 -21.93848 -21.12331 -19.88248 -19.45518 -18.82250 -17.63828 -17.42882 -16.84151 -16.64399 -16.37787 -16.15637 -15.96126 -15.79357 -15.52191 -15.40897 -15.24238 -15.13292 -14.83981 -14.40789 -14.33897 -14.01917 -13.91989 -13.63761 -13.55552 -13.23751 -13.07116 -13.01406 -12.54839 -12.35984 -12.21890 -12.21463 -12.11438 -11.98065 -11.64919 -11.41118 -11.22100 -11.19529 -10.80501 -10.40732 -10.34818 -9.81355 -9.70743 -9.01319 -8.47973 -6.16113 0.53605 0.58609 1.36075 1.44052 1.53052 1.83868 2.17405 2.19534 2.74289 2.81701 3.13664 3.45207 3.49144 3.72060 3.89494 3.93110 3.94833 4.04519 4.05841 4.16034 4.18453 4.26577 4.48084 4.50257 4.57841 4.61528 4.69191 4.74466 4.80225 4.82253 4.88633 4.94324 5.05238 5.07543 5.15131 5.15435 5.20923 5.27549 5.39834 5.47822 5.52384 5.54587 5.69673 5.76849 6.01879 6.03262 6.17139 6.27567 6.96855 7.11344 7.60832 7.76125 8.74775 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016298 B = 0.001837 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.587740 B =15241.245248 C =16333.995070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.022 4.022 3 Si 1.018 2.982 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.252 1.252 7 C -0.413 4.413 8 H 0.103 0.897 9 O -0.229 6.229 10 C 0.123 3.877 11 C -0.244 4.244 12 C -0.046 4.046 13 C -0.181 4.181 14 C 0.204 3.796 15 N -0.731 5.731 16 C 0.700 3.300 17 O -0.638 6.638 18 N -0.732 5.732 19 C 0.148 3.852 20 C 0.084 3.916 21 H 0.077 0.923 22 C -0.147 4.147 23 C -0.121 4.121 24 C -0.157 4.157 25 C 0.054 3.946 26 O -0.398 6.398 27 C -0.042 4.042 28 C -0.204 4.204 29 H 0.273 0.727 30 H 0.120 0.880 31 H 0.137 0.863 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.407 0.593 35 H 0.410 0.590 36 H 0.083 0.917 37 H 0.055 0.945 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.087 0.913 44 H 0.098 0.902 45 H 0.060 0.940 46 H 0.148 0.852 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.069 -20.716 16.196 30.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.176 1.176 7 C -0.489 4.489 8 H 0.121 0.879 9 O -0.135 6.135 10 C 0.072 3.928 11 C -0.263 4.263 12 C -0.064 4.064 13 C -0.182 4.182 14 C 0.080 3.920 15 N -0.387 5.387 16 C 0.400 3.600 17 O -0.520 6.520 18 N -0.388 5.388 19 C 0.024 3.976 20 C 0.026 3.974 21 H 0.095 0.905 22 C -0.185 4.185 23 C -0.158 4.158 24 C -0.194 4.194 25 C -0.022 4.022 26 O -0.317 6.317 27 C -0.061 4.061 28 C -0.223 4.223 29 H 0.082 0.918 30 H 0.138 0.862 31 H 0.155 0.845 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.242 0.758 35 H 0.245 0.755 36 H 0.101 0.899 37 H 0.074 0.926 38 H 0.108 0.892 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.105 0.895 44 H 0.116 0.884 45 H 0.078 0.922 46 H 0.166 0.834 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 15.114 -21.087 15.271 30.104 hybrid contribution -0.332 1.423 0.520 1.551 sum 14.782 -19.663 15.791 29.232 Atomic orbital electron populations 1.70176 1.07994 1.28843 1.48604 1.26576 0.96837 1.02729 0.95820 0.84597 0.77855 0.74638 0.79219 1.18921 1.19638 1.17605 1.21825 0.92564 0.81346 1.53205 0.87944 1.83945 1.36037 1.12657 1.80866 1.19990 0.91591 0.87975 0.93270 1.21241 0.93044 1.00020 1.12023 1.20938 0.99772 0.90783 0.94914 1.19493 0.93493 0.94073 1.11142 1.19716 0.98013 0.93390 0.80832 1.45238 1.57398 1.26797 1.09220 1.16103 0.79116 0.81583 0.83213 1.90884 1.59273 1.51358 1.50492 1.44896 1.58603 1.29893 1.05379 1.21269 0.95499 0.87770 0.93072 1.22339 0.96255 0.86231 0.92541 0.90493 1.22130 1.01139 0.97857 0.97420 1.21590 1.01694 0.97935 0.94594 1.22195 0.99708 0.95251 1.02271 1.22741 0.99751 0.99429 0.80249 1.87957 1.79448 1.41115 1.23216 1.20885 0.93000 0.97023 0.95152 1.20451 1.00109 0.90374 1.11407 0.91808 0.86207 0.84480 0.91053 0.91596 0.75769 0.75464 0.89893 0.92608 0.89233 0.91422 0.90422 0.90952 0.91866 0.89480 0.88419 0.92162 0.83417 0.86588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.50 13.67 21.61 0.30 -55.21 16 2 C -0.02 -1.22 5.49 84.83 0.47 -0.75 16 3 Si 1.02 42.11 29.55 68.60 2.03 44.13 16 4 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 6 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 7 C -0.41 -23.54 9.49 67.92 0.64 -22.90 16 8 H 0.10 5.34 5.20 -2.91 -0.02 5.32 16 9 O -0.23 -13.44 9.76 -22.71 -0.22 -13.66 16 10 C 0.12 5.87 6.65 22.58 0.15 6.02 16 11 C -0.24 -10.15 9.17 22.39 0.21 -9.95 16 12 C -0.05 -1.49 9.69 22.25 0.22 -1.27 16 13 C -0.18 -5.31 5.25 -19.83 -0.10 -5.41 16 14 C 0.20 5.21 5.80 85.63 0.50 5.71 16 15 N -0.73 -16.96 5.55 -482.30 -2.68 -19.64 16 16 C 0.70 18.16 8.57 179.06 1.53 19.69 16 17 O -0.64 -21.67 16.34 -4.01 -0.07 -21.73 16 18 N -0.73 -14.10 5.45 -478.53 -2.61 -16.71 16 19 C 0.15 2.54 5.37 86.38 0.46 3.00 16 20 C 0.08 1.04 2.73 30.63 0.08 1.13 16 21 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 22 C -0.15 -1.41 5.42 30.69 0.17 -1.24 16 23 C -0.12 -0.90 6.03 30.71 0.19 -0.71 16 24 C -0.16 -1.31 6.14 30.69 0.19 -1.12 16 25 C 0.05 0.57 6.84 72.01 0.49 1.07 16 26 O -0.40 -6.19 10.15 -148.98 -1.51 -7.70 16 27 C -0.04 -1.32 9.69 22.25 0.22 -1.10 16 28 C -0.20 -8.22 9.99 22.39 0.22 -8.00 16 29 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 30 H 0.12 5.11 5.64 -2.91 -0.02 5.09 16 31 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 32 H 0.07 1.81 8.08 -2.38 -0.02 1.79 16 33 H 0.07 1.74 8.08 -2.39 -0.02 1.72 16 34 H 0.41 8.11 8.48 -92.71 -0.79 7.32 16 35 H 0.41 6.25 8.36 -92.71 -0.78 5.47 16 36 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.14 16 38 H 0.09 0.64 8.14 -2.39 -0.02 0.63 16 39 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 44 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.15 3.64 8.06 -2.91 -0.02 3.61 16 47 H 0.12 4.63 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -74.50 390.00 0.30 -74.20 By element: Atomic # 1 Polarization: 32.73 SS G_CDS: -0.57 Total: 32.16 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: 5.63 Total: -15.85 kcal Atomic # 7 Polarization: -86.56 SS G_CDS: -4.99 Total: -91.55 kcal Atomic # 8 Polarization: -41.30 SS G_CDS: -1.80 Total: -43.10 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal Total: -74.50 0.30 -74.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263949716.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.474 kcal (2) G-P(sol) polarization free energy of solvation -74.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 13.29 seconds