Wall clock time and date at job start Tue Mar 31 2020 23:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86803 * 120.00254 * 2 1 4 4 H 1.48492 * 109.47585 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46954 * 300.00410 * 3 2 1 6 6 H 1.48503 * 109.46899 * 59.99780 * 3 2 1 7 7 C 1.39893 * 120.00245 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00425 * 175.55498 * 7 2 1 9 9 C 1.41164 * 119.99713 * 355.55982 * 7 2 1 10 10 C 1.40864 * 120.16322 * 214.78133 * 9 7 2 11 11 C 1.36367 * 119.82948 * 180.02562 * 10 9 7 12 12 C 1.39487 * 120.16724 * 0.02562 * 11 10 9 13 13 N 1.39244 * 119.82955 * 179.97438 * 12 11 10 14 14 C 1.34774 * 120.00414 * 35.30005 * 13 12 11 15 15 O 1.21580 * 119.99813 * 355.70061 * 14 13 12 16 16 N 1.34776 * 120.00345 * 175.71076 * 14 13 12 17 17 C 1.46501 * 119.99790 * 179.97438 * 16 14 13 18 18 C 1.53006 * 109.46445 * 179.97438 * 17 16 14 19 19 H 1.08999 * 109.47239 * 59.99806 * 18 17 16 20 20 O 1.42897 * 109.47210 * 299.99376 * 18 17 16 21 21 C 1.53001 * 109.46735 * 179.97438 * 18 17 16 22 22 C 1.53175 * 109.54469 * 184.99722 * 21 18 17 23 23 C 1.53086 * 109.16417 * 183.06469 * 22 21 18 24 24 O 1.42901 * 109.41666 * 57.61324 * 23 22 21 25 25 C 1.42907 * 114.09580 * 298.84070 * 24 23 22 26 26 C 1.53093 * 109.41431 * 61.15570 * 25 24 23 27 27 C 1.39471 * 120.33314 * 0.25099 * 12 11 10 28 28 C 1.36384 * 120.16692 * 359.44638 * 27 12 11 29 29 H 0.97002 * 119.99805 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.08322 * 359.97438 * 10 9 7 31 31 H 1.07997 * 119.91942 * 179.97438 * 11 10 9 32 32 H 0.97005 * 119.99536 * 215.28940 * 13 12 11 33 33 H 0.97002 * 119.99750 * 359.97438 * 16 14 13 34 34 H 1.08998 * 109.47099 * 59.99915 * 17 16 14 35 35 H 1.08990 * 109.47061 * 299.99035 * 17 16 14 36 36 H 0.96703 * 114.00108 * 300.00609 * 20 18 17 37 37 H 1.09000 * 109.54749 * 305.17723 * 21 18 17 38 38 H 1.08998 * 109.52062 * 63.16091 * 22 21 18 39 39 H 1.08998 * 109.57842 * 303.00398 * 22 21 18 40 40 H 1.09002 * 109.48333 * 297.62315 * 23 22 21 41 41 H 1.09010 * 109.47954 * 177.59468 * 23 22 21 42 42 H 1.08996 * 109.47822 * 181.14031 * 25 24 23 43 43 H 1.09002 * 109.47975 * 301.17486 * 25 24 23 44 44 H 1.08995 * 109.52011 * 182.48719 * 26 25 24 45 45 H 1.08998 * 109.57121 * 62.33422 * 26 25 24 46 46 H 1.08001 * 119.92001 * 179.70720 * 27 12 11 47 47 H 1.08001 * 120.08107 * 180.25632 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3464 -0.0006 5 1 1.8840 2.3965 -1.2125 6 1 1.8841 2.3964 1.2125 7 6 2.0083 -1.2115 0.0005 8 1 3.0859 -1.2130 -0.0719 9 6 1.3056 -2.4321 0.0957 10 6 1.8649 -3.5179 0.7976 11 6 1.1804 -4.6941 0.8849 12 6 -0.0702 -4.8238 0.2808 13 7 -0.7627 -6.0282 0.3739 14 6 -0.6812 -6.7674 1.4978 15 8 0.0577 -6.4229 2.3997 16 7 -1.4185 -7.8888 1.6220 17 6 -1.3294 -8.6925 2.8436 18 6 -2.2608 -9.9009 2.7280 19 1 -1.9651 -10.5070 1.8717 20 8 -3.6054 -9.4506 2.5512 21 6 -2.1673 -10.7407 4.0034 22 6 -3.0022 -12.0145 3.8406 23 6 -2.9647 -12.8105 5.1478 24 8 -3.4525 -11.9947 6.2149 25 6 -2.6827 -10.8128 6.4445 26 6 -2.7088 -9.9366 5.1894 27 6 -0.6278 -3.7551 -0.4207 28 6 0.0421 -2.5706 -0.5113 29 1 -0.4850 0.8401 0.0004 30 1 2.8337 -3.4192 1.2648 31 1 1.6080 -5.5276 1.4223 32 1 -1.3041 -6.3351 -0.3703 33 1 -2.0082 -8.1635 0.9025 34 1 -1.6256 -8.0864 3.6997 35 1 -0.3037 -9.0357 2.9786 36 1 -3.9359 -8.9040 3.2772 37 1 -1.1269 -11.0078 4.1887 38 1 -2.5895 -12.6199 3.0336 39 1 -4.0327 -11.7483 3.6058 40 1 -1.9391 -13.1122 5.3604 41 1 -3.5920 -13.6968 5.0518 42 1 -3.1068 -10.2600 7.2827 43 1 -1.6533 -11.0883 6.6741 44 1 -2.0863 -9.0559 5.3471 45 1 -3.7329 -9.6263 4.9820 46 1 -1.5945 -3.8644 -0.8898 47 1 -0.3929 -1.7426 -1.0514 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265563723.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:17 Heat of formation + Delta-G solvation = -112.919037 kcal Electronic energy + Delta-G solvation = -28012.228999 eV Core-core repulsion = 23966.304639 eV Total energy + Delta-G solvation = -4045.924360 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 11.47 seconds Orbital eigenvalues (eV) -40.42620 -39.74252 -37.99378 -37.23163 -34.52502 -34.06982 -33.79632 -32.81370 -31.56170 -29.67281 -29.37685 -28.40917 -25.62758 -24.52205 -24.05594 -22.28926 -21.53915 -20.86713 -20.41845 -19.96272 -18.02568 -17.49709 -17.22483 -16.58513 -16.48757 -16.13253 -15.99213 -15.28845 -15.14548 -14.99487 -14.84165 -14.65854 -14.04426 -13.84756 -13.69648 -13.29448 -13.05866 -12.73295 -12.64713 -12.52192 -12.07871 -12.04502 -11.75027 -11.66908 -11.49976 -11.32833 -11.14734 -11.05382 -10.93572 -10.77826 -10.70013 -10.39939 -10.07458 -9.84394 -9.51244 -9.43163 -9.21681 -8.94932 -8.82864 -7.50308 -6.79699 -6.57712 -4.29900 2.68443 2.96346 3.11457 3.11801 3.16965 3.19292 3.47948 3.70990 3.98061 4.01282 4.11363 4.23932 4.31108 4.54023 4.64479 4.72551 4.74594 4.77000 4.91008 4.95189 5.07627 5.23353 5.27143 5.27289 5.39314 5.52023 5.57223 5.62808 5.69074 5.75684 5.90157 6.22980 6.45309 6.57093 6.78596 6.80193 6.85310 7.08413 7.19181 7.22864 7.30567 7.44648 7.69166 7.89814 8.01109 8.13605 8.34785 8.49841 8.68107 8.96133 8.97384 9.12079 10.33631 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.030303 B = 0.001829 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.778260 B =15307.967586 C =15579.410337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.069 3.931 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.461 4.461 8 H 0.076 0.924 9 C 0.097 3.903 10 C -0.204 4.204 11 C -0.087 4.087 12 C 0.024 3.976 13 N -0.667 5.667 14 C 0.694 3.306 15 O -0.580 6.580 16 N -0.748 5.748 17 C 0.108 3.892 18 C 0.103 3.897 19 H 0.106 0.894 20 O -0.555 6.555 21 C -0.118 4.118 22 C -0.146 4.146 23 C 0.060 3.940 24 O -0.384 6.384 25 C 0.063 3.937 26 C -0.161 4.161 27 C -0.124 4.124 28 C -0.140 4.140 29 H 0.276 0.724 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.392 0.608 33 H 0.396 0.604 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.376 0.624 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.049 0.951 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.052 0.948 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.090 0.910 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.804 -21.604 6.182 23.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.146 4.146 3 Si 0.740 3.260 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.493 4.493 8 H 0.094 0.906 9 C 0.094 3.906 10 C -0.224 4.224 11 C -0.107 4.107 12 C -0.069 4.069 13 N -0.313 5.313 14 C 0.395 3.605 15 O -0.458 6.458 16 N -0.406 5.406 17 C -0.017 4.017 18 C 0.043 3.957 19 H 0.124 0.876 20 O -0.362 6.362 21 C -0.138 4.138 22 C -0.184 4.184 23 C -0.017 4.017 24 O -0.303 6.303 25 C -0.014 4.014 26 C -0.199 4.199 27 C -0.144 4.144 28 C -0.160 4.160 29 H 0.087 0.913 30 H 0.113 0.887 31 H 0.126 0.874 32 H 0.225 0.775 33 H 0.230 0.770 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.225 0.775 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.067 0.933 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.070 0.930 44 H 0.100 0.900 45 H 0.094 0.906 46 H 0.109 0.891 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.424 -21.501 6.597 23.684 hybrid contribution -0.010 0.915 -0.225 0.942 sum -7.435 -20.587 6.372 22.797 Atomic orbital electron populations 1.69776 1.07249 1.28480 1.38640 1.25867 0.94935 1.01114 0.92658 0.86162 0.80588 0.80952 0.78332 1.18627 1.20055 1.20046 1.19514 0.94709 0.90208 1.44824 0.90630 1.17726 0.92350 0.92050 0.88457 1.20804 1.01163 0.94953 1.05456 1.20418 0.92794 0.97925 0.99609 1.17081 0.93730 0.85021 1.11020 1.42108 1.51654 1.22118 1.15377 1.16027 0.81265 0.80078 0.83151 1.90904 1.42375 1.71566 1.40906 1.44954 1.48400 1.26597 1.20603 1.21846 1.00261 0.91949 0.87633 1.22172 0.82211 0.93397 0.97901 0.87613 1.86569 1.28098 1.72119 1.49406 1.21812 1.00807 0.96039 0.95108 1.22171 1.01907 0.96132 0.98207 1.22596 0.99368 0.93435 0.86304 1.87946 1.54412 1.35067 1.52843 1.22552 0.95908 0.85951 0.97010 1.22347 1.02634 0.99436 0.95475 1.20300 0.98396 0.93057 1.02668 1.21175 0.97297 0.95445 1.02086 0.91287 0.88656 0.87401 0.77504 0.76967 0.91345 0.91013 0.77487 0.89792 0.90792 0.90112 0.93255 0.88869 0.88660 0.93020 0.89994 0.90587 0.89148 0.85041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.45 10.60 55.54 0.59 -20.87 16 2 C 0.07 1.76 5.42 -17.34 -0.09 1.67 16 3 Si 0.91 19.26 29.56 -169.99 -5.03 14.24 16 4 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 6 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 7 C -0.46 -12.48 9.02 -37.85 -0.34 -12.82 16 8 H 0.08 1.97 7.85 -52.49 -0.41 1.56 16 9 C 0.10 2.63 5.55 -106.80 -0.59 2.04 16 10 C -0.20 -5.25 9.74 -39.26 -0.38 -5.63 16 11 C -0.09 -2.14 8.61 -39.79 -0.34 -2.48 16 12 C 0.02 0.55 6.31 -83.57 -0.53 0.02 16 13 N -0.67 -11.94 5.31 -14.10 -0.07 -12.02 16 14 C 0.69 12.37 8.40 -86.92 -0.73 11.64 16 15 O -0.58 -12.85 13.76 5.30 0.07 -12.78 16 16 N -0.75 -9.28 5.45 -65.23 -0.36 -9.63 16 17 C 0.11 1.11 5.10 -4.04 -0.02 1.08 16 18 C 0.10 0.75 2.81 -26.73 -0.08 0.67 16 19 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 20 O -0.56 -4.50 12.48 -35.23 -0.44 -4.94 16 21 C -0.12 -0.74 2.10 -90.44 -0.19 -0.93 16 22 C -0.15 -0.89 5.35 -26.60 -0.14 -1.04 16 23 C 0.06 0.38 6.84 37.20 0.25 0.63 16 24 O -0.38 -3.29 10.77 -35.23 -0.38 -3.67 16 25 C 0.06 0.42 6.84 37.21 0.25 0.68 16 26 C -0.16 -1.03 4.76 -26.59 -0.13 -1.15 16 27 C -0.12 -2.86 9.90 -39.79 -0.39 -3.26 16 28 C -0.14 -3.64 8.61 -39.26 -0.34 -3.98 16 29 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 30 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 31 H 0.11 2.63 6.22 -52.49 -0.33 2.30 16 32 H 0.39 5.52 8.83 -40.82 -0.36 5.16 16 33 H 0.40 4.00 8.37 -40.82 -0.34 3.66 16 34 H 0.07 0.75 6.66 -51.93 -0.35 0.41 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.38 2.45 7.13 45.56 0.32 2.77 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.59 7.76 -51.93 -0.40 0.18 16 40 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 41 H 0.09 0.50 8.14 -51.92 -0.42 0.07 16 42 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.08 0.53 6.75 -51.93 -0.35 0.18 16 45 H 0.08 0.48 6.57 -51.93 -0.34 0.14 16 46 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 47 H 0.13 3.53 6.13 -52.49 -0.32 3.21 16 LS Contribution 376.43 15.07 5.67 5.67 Total: -1.00 -32.67 376.43 -9.97 -42.64 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -6.24 Total: 14.21 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -3.79 Total: -12.85 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: 0.16 Total: -42.51 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.75 Total: -21.40 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.03 Total: 14.24 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.67 -9.97 -42.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265563723.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.280 kcal (2) G-P(sol) polarization free energy of solvation -32.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.47 seconds