Wall clock time and date at job start Tue Mar 31 2020 23:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86803 * 120.00254 * 2 1 4 4 H 1.48492 * 109.47585 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46954 * 300.00410 * 3 2 1 6 6 H 1.48503 * 109.46899 * 59.99780 * 3 2 1 7 7 C 1.39893 * 120.00245 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00425 * 175.55498 * 7 2 1 9 9 C 1.41164 * 119.99713 * 355.55982 * 7 2 1 10 10 C 1.40864 * 120.16322 * 214.78133 * 9 7 2 11 11 C 1.36367 * 119.82948 * 180.02562 * 10 9 7 12 12 C 1.39487 * 120.16724 * 0.02562 * 11 10 9 13 13 N 1.39244 * 119.82955 * 179.97438 * 12 11 10 14 14 C 1.34774 * 120.00414 * 35.30005 * 13 12 11 15 15 O 1.21580 * 119.99813 * 355.70061 * 14 13 12 16 16 N 1.34776 * 120.00345 * 175.71076 * 14 13 12 17 17 C 1.46501 * 119.99790 * 179.97438 * 16 14 13 18 18 C 1.53006 * 109.46445 * 179.97438 * 17 16 14 19 19 H 1.08999 * 109.47239 * 59.99806 * 18 17 16 20 20 O 1.42897 * 109.47210 * 299.99376 * 18 17 16 21 21 C 1.53001 * 109.46735 * 179.97438 * 18 17 16 22 22 C 1.53175 * 109.54469 * 184.99722 * 21 18 17 23 23 C 1.53086 * 109.16417 * 183.06469 * 22 21 18 24 24 O 1.42901 * 109.41666 * 57.61324 * 23 22 21 25 25 C 1.42907 * 114.09580 * 298.84070 * 24 23 22 26 26 C 1.53093 * 109.41431 * 61.15570 * 25 24 23 27 27 C 1.39471 * 120.33314 * 0.25099 * 12 11 10 28 28 C 1.36384 * 120.16692 * 359.44638 * 27 12 11 29 29 H 0.97002 * 119.99805 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.08322 * 359.97438 * 10 9 7 31 31 H 1.07997 * 119.91942 * 179.97438 * 11 10 9 32 32 H 0.97005 * 119.99536 * 215.28940 * 13 12 11 33 33 H 0.97002 * 119.99750 * 359.97438 * 16 14 13 34 34 H 1.08998 * 109.47099 * 59.99915 * 17 16 14 35 35 H 1.08990 * 109.47061 * 299.99035 * 17 16 14 36 36 H 0.96703 * 114.00108 * 300.00609 * 20 18 17 37 37 H 1.09000 * 109.54749 * 305.17723 * 21 18 17 38 38 H 1.08998 * 109.52062 * 63.16091 * 22 21 18 39 39 H 1.08998 * 109.57842 * 303.00398 * 22 21 18 40 40 H 1.09002 * 109.48333 * 297.62315 * 23 22 21 41 41 H 1.09010 * 109.47954 * 177.59468 * 23 22 21 42 42 H 1.08996 * 109.47822 * 181.14031 * 25 24 23 43 43 H 1.09002 * 109.47975 * 301.17486 * 25 24 23 44 44 H 1.08995 * 109.52011 * 182.48719 * 26 25 24 45 45 H 1.08998 * 109.57121 * 62.33422 * 26 25 24 46 46 H 1.08001 * 119.92001 * 179.70720 * 27 12 11 47 47 H 1.08001 * 120.08107 * 180.25632 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3464 -0.0006 5 1 1.8840 2.3965 -1.2125 6 1 1.8841 2.3964 1.2125 7 6 2.0083 -1.2115 0.0005 8 1 3.0859 -1.2130 -0.0719 9 6 1.3056 -2.4321 0.0957 10 6 1.8649 -3.5179 0.7976 11 6 1.1804 -4.6941 0.8849 12 6 -0.0702 -4.8238 0.2808 13 7 -0.7627 -6.0282 0.3739 14 6 -0.6812 -6.7674 1.4978 15 8 0.0577 -6.4229 2.3997 16 7 -1.4185 -7.8888 1.6220 17 6 -1.3294 -8.6925 2.8436 18 6 -2.2608 -9.9009 2.7280 19 1 -1.9651 -10.5070 1.8717 20 8 -3.6054 -9.4506 2.5512 21 6 -2.1673 -10.7407 4.0034 22 6 -3.0022 -12.0145 3.8406 23 6 -2.9647 -12.8105 5.1478 24 8 -3.4525 -11.9947 6.2149 25 6 -2.6827 -10.8128 6.4445 26 6 -2.7088 -9.9366 5.1894 27 6 -0.6278 -3.7551 -0.4207 28 6 0.0421 -2.5706 -0.5113 29 1 -0.4850 0.8401 0.0004 30 1 2.8337 -3.4192 1.2648 31 1 1.6080 -5.5276 1.4223 32 1 -1.3041 -6.3351 -0.3703 33 1 -2.0082 -8.1635 0.9025 34 1 -1.6256 -8.0864 3.6997 35 1 -0.3037 -9.0357 2.9786 36 1 -3.9359 -8.9040 3.2772 37 1 -1.1269 -11.0078 4.1887 38 1 -2.5895 -12.6199 3.0336 39 1 -4.0327 -11.7483 3.6058 40 1 -1.9391 -13.1122 5.3604 41 1 -3.5920 -13.6968 5.0518 42 1 -3.1068 -10.2600 7.2827 43 1 -1.6533 -11.0883 6.6741 44 1 -2.0863 -9.0559 5.3471 45 1 -3.7329 -9.6263 4.9820 46 1 -1.5945 -3.8644 -0.8898 47 1 -0.3929 -1.7426 -1.0514 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265563723.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:01 Heat of formation + Delta-G solvation = -136.644781 kcal Electronic energy + Delta-G solvation = -28013.257825 eV Core-core repulsion = 23966.304639 eV Total energy + Delta-G solvation = -4046.953185 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 4.52 seconds Orbital eigenvalues (eV) -41.49738 -40.73133 -39.29824 -38.41053 -36.18580 -35.35002 -34.60194 -34.35204 -32.05703 -31.48477 -30.92535 -29.68504 -26.93902 -25.77124 -24.60672 -23.47480 -22.88116 -22.52317 -21.67742 -20.84520 -19.46689 -19.10495 -18.48530 -17.74174 -17.20017 -17.02139 -16.84102 -16.58592 -16.23598 -16.07338 -15.73100 -15.67102 -15.62888 -15.09224 -14.68229 -14.52814 -14.48731 -13.99852 -13.87042 -13.60724 -13.44397 -13.22810 -13.19997 -12.85163 -12.74600 -12.60074 -12.47356 -12.24263 -12.05337 -11.81292 -11.60327 -11.38384 -11.31463 -11.25011 -11.06479 -10.93338 -10.65890 -10.39223 -10.08661 -9.44873 -8.67476 -8.48499 -6.30806 0.85570 1.15901 1.40144 1.47162 1.55394 1.74196 2.20628 2.26058 2.82752 2.98003 3.25299 3.50377 3.52098 3.69685 3.73211 3.78545 4.01558 4.12522 4.19618 4.32154 4.40602 4.43731 4.54344 4.57053 4.63666 4.74629 4.80213 4.82020 4.85606 4.94634 5.00899 5.12278 5.14872 5.16374 5.18774 5.34583 5.39854 5.45083 5.48070 5.70829 5.83251 6.04885 6.13073 6.26826 6.28316 6.41517 6.67167 6.70319 6.98803 7.02875 7.15530 7.65593 8.44438 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.030303 B = 0.001829 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.778260 B =15307.967586 C =15579.410337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.026 3.974 3 Si 0.988 3.012 4 H -0.261 1.261 5 H -0.263 1.263 6 H -0.270 1.270 7 C -0.498 4.498 8 H 0.072 0.928 9 C 0.064 3.936 10 C -0.218 4.218 11 C -0.098 4.098 12 C 0.042 3.958 13 N -0.660 5.660 14 C 0.692 3.308 15 O -0.625 6.625 16 N -0.724 5.724 17 C 0.106 3.894 18 C 0.118 3.882 19 H 0.117 0.883 20 O -0.564 6.564 21 C -0.114 4.114 22 C -0.141 4.141 23 C 0.055 3.945 24 O -0.406 6.406 25 C 0.059 3.941 26 C -0.159 4.159 27 C -0.121 4.121 28 C -0.157 4.157 29 H 0.284 0.716 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.414 0.586 33 H 0.412 0.588 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.383 0.617 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.057 0.943 41 H 0.102 0.898 42 H 0.099 0.901 43 H 0.056 0.944 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.124 0.876 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.763 -22.803 5.893 25.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.185 4.185 3 Si 0.810 3.190 4 H -0.184 1.184 5 H -0.187 1.187 6 H -0.195 1.195 7 C -0.529 4.529 8 H 0.090 0.910 9 C 0.061 3.939 10 C -0.238 4.238 11 C -0.119 4.119 12 C -0.052 4.052 13 N -0.308 5.308 14 C 0.392 3.608 15 O -0.506 6.506 16 N -0.381 5.381 17 C -0.019 4.019 18 C 0.058 3.942 19 H 0.135 0.865 20 O -0.371 6.371 21 C -0.133 4.133 22 C -0.178 4.178 23 C -0.022 4.022 24 O -0.326 6.326 25 C -0.018 4.018 26 C -0.197 4.197 27 C -0.142 4.142 28 C -0.177 4.177 29 H 0.095 0.905 30 H 0.114 0.886 31 H 0.126 0.874 32 H 0.251 0.749 33 H 0.249 0.751 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.233 0.767 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.120 0.880 42 H 0.117 0.883 43 H 0.075 0.925 44 H 0.097 0.903 45 H 0.094 0.906 46 H 0.142 0.858 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.441 -22.777 6.283 25.090 hybrid contribution 0.199 1.091 -0.087 1.113 sum -8.242 -21.685 6.196 24.012 Atomic orbital electron populations 1.69836 1.08542 1.29811 1.38925 1.26732 0.95828 1.04289 0.91669 0.85059 0.79052 0.76170 0.78754 1.18429 1.18742 1.19488 1.19730 0.94783 0.91327 1.47015 0.91005 1.18042 0.93451 0.92741 0.89627 1.20925 1.01562 0.95475 1.05876 1.20521 0.93752 0.97465 1.00123 1.17096 0.92993 0.86430 1.08693 1.41894 1.51507 1.20776 1.16573 1.16209 0.81236 0.80953 0.82385 1.90883 1.44397 1.72928 1.42360 1.44780 1.46926 1.24706 1.21709 1.22049 1.00989 0.92563 0.86286 1.22080 0.81205 0.92023 0.98886 0.86506 1.86559 1.28220 1.72325 1.50010 1.21780 1.01266 0.95931 0.94361 1.22115 1.01190 0.96019 0.98497 1.22741 1.00031 0.93517 0.85872 1.87916 1.55220 1.35733 1.53686 1.22637 0.96087 0.85693 0.97345 1.22316 1.02605 0.99271 0.95492 1.20534 0.99347 0.92025 1.02259 1.21160 0.97469 0.96357 1.02735 0.90549 0.88643 0.87450 0.74936 0.75123 0.92045 0.91375 0.76710 0.89174 0.89482 0.91210 0.92443 0.88012 0.88283 0.92523 0.90274 0.90565 0.85809 0.86304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.09 10.60 21.82 0.23 -44.86 16 2 C 0.03 1.37 5.42 85.24 0.46 1.83 16 3 Si 0.99 39.73 29.56 68.60 2.03 41.76 16 4 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 5 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 6 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 7 C -0.50 -27.78 9.02 23.39 0.21 -27.57 16 8 H 0.07 3.89 7.85 -2.91 -0.02 3.87 16 9 C 0.06 3.58 5.55 -21.28 -0.12 3.46 16 10 C -0.22 -11.60 9.74 22.48 0.22 -11.38 16 11 C -0.10 -4.85 8.61 22.13 0.19 -4.66 16 12 C 0.04 1.86 6.31 38.56 0.24 2.11 16 13 N -0.66 -22.26 5.31 -316.79 -1.68 -23.94 16 14 C 0.69 23.52 8.40 179.06 1.50 25.02 16 15 O -0.63 -27.35 13.76 -3.97 -0.05 -27.41 16 16 N -0.72 -16.24 5.45 -478.55 -2.61 -18.85 16 17 C 0.11 1.95 5.10 86.38 0.44 2.39 16 18 C 0.12 1.42 2.81 30.60 0.09 1.50 16 19 H 0.12 1.22 8.14 -2.39 -0.02 1.21 16 20 O -0.56 -7.73 12.48 -148.98 -1.86 -9.59 16 21 C -0.11 -1.19 2.10 -10.67 -0.02 -1.21 16 22 C -0.14 -1.41 5.35 30.68 0.16 -1.24 16 23 C 0.05 0.60 6.84 72.01 0.49 1.09 16 24 O -0.41 -6.49 10.77 -148.98 -1.60 -8.09 16 25 C 0.06 0.73 6.84 72.01 0.49 1.23 16 26 C -0.16 -1.81 4.76 30.69 0.15 -1.66 16 27 C -0.12 -5.50 9.90 22.13 0.22 -5.28 16 28 C -0.16 -8.31 8.61 22.48 0.19 -8.12 16 29 H 0.28 13.75 8.30 -92.71 -0.77 12.98 16 30 H 0.10 4.88 8.06 -2.91 -0.02 4.86 16 31 H 0.11 5.29 6.22 -2.91 -0.02 5.27 16 32 H 0.41 10.36 8.83 -92.70 -0.82 9.54 16 33 H 0.41 6.95 8.37 -92.71 -0.78 6.18 16 34 H 0.06 1.27 6.66 -2.39 -0.02 1.25 16 35 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.38 4.19 7.13 -74.06 -0.53 3.66 16 37 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.07 0.88 7.76 -2.39 -0.02 0.86 16 40 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 42 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.08 0.95 6.75 -2.39 -0.02 0.93 16 45 H 0.08 0.86 6.57 -2.39 -0.02 0.84 16 46 H 0.12 4.71 8.06 -2.91 -0.02 4.68 16 47 H 0.12 6.54 6.13 -2.91 -0.02 6.52 16 Total: -1.00 -71.83 376.43 -1.72 -73.55 By element: Atomic # 1 Polarization: 41.02 SS G_CDS: -1.10 Total: 39.92 kcal Atomic # 6 Polarization: -27.43 SS G_CDS: 4.92 Total: -22.50 kcal Atomic # 7 Polarization: -83.59 SS G_CDS: -4.06 Total: -87.65 kcal Atomic # 8 Polarization: -41.57 SS G_CDS: -3.52 Total: -45.09 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.76 kcal Total: -71.83 -1.72 -73.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265563723.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.090 kcal (2) G-P(sol) polarization free energy of solvation -71.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.52 seconds