Wall clock time and date at job start Tue Mar 31 2020 23:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86800 * 120.00188 * 2 1 4 4 H 1.48499 * 109.47165 * 240.00099 * 3 2 1 5 5 H 1.48500 * 109.47015 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47393 * 119.99927 * 3 2 1 7 7 C 1.39893 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99986 * 175.55827 * 7 2 1 9 9 C 1.41160 * 120.00356 * 355.55222 * 7 2 1 10 10 C 1.40865 * 120.16689 * 214.78549 * 9 7 2 11 11 C 1.36374 * 119.82503 * 180.02562 * 10 9 7 12 12 C 1.39481 * 120.17109 * 0.02562 * 11 10 9 13 13 N 1.39238 * 119.83302 * 179.97438 * 12 11 10 14 14 C 1.34782 * 120.00404 * 35.29811 * 13 12 11 15 15 O 1.21585 * 119.99407 * 355.70378 * 14 13 12 16 16 N 1.34770 * 120.00453 * 175.71007 * 14 13 12 17 17 C 1.46501 * 120.00175 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.47306 * 180.02562 * 17 16 14 19 19 H 1.09005 * 109.46781 * 304.99843 * 18 17 16 20 20 O 1.42901 * 109.47467 * 64.99853 * 18 17 16 21 21 C 1.53000 * 109.47016 * 184.99853 * 18 17 16 22 22 C 1.53182 * 109.54119 * 179.97438 * 21 18 17 23 23 C 1.53091 * 109.16140 * 183.14993 * 22 21 18 24 24 O 1.42906 * 109.41142 * 57.61342 * 23 22 21 25 25 C 1.42901 * 114.09843 * 298.83648 * 24 23 22 26 26 C 1.53095 * 109.41263 * 61.16019 * 25 24 23 27 27 C 1.39475 * 120.33403 * 0.25070 * 12 11 10 28 28 C 1.36377 * 120.16895 * 359.44469 * 27 12 11 29 29 H 0.96999 * 119.99874 * 0.02562 * 1 2 3 30 30 H 1.07995 * 120.08789 * 0.02562 * 10 9 7 31 31 H 1.07996 * 119.91666 * 179.97438 * 11 10 9 32 32 H 0.97001 * 120.00109 * 215.29182 * 13 12 11 33 33 H 0.96998 * 119.99857 * 359.97438 * 16 14 13 34 34 H 1.09000 * 109.47309 * 59.99314 * 17 16 14 35 35 H 1.09002 * 109.46934 * 299.99796 * 17 16 14 36 36 H 0.96702 * 113.99589 * 59.99720 * 20 18 17 37 37 H 1.08997 * 109.61669 * 300.22058 * 21 18 17 38 38 H 1.08997 * 109.52000 * 63.24949 * 22 21 18 39 39 H 1.08994 * 109.52339 * 303.05770 * 22 21 18 40 40 H 1.08998 * 109.47843 * 177.59284 * 23 22 21 41 41 H 1.09002 * 109.48506 * 297.62930 * 23 22 21 42 42 H 1.08997 * 109.47931 * 181.14159 * 25 24 23 43 43 H 1.08999 * 109.48304 * 301.17720 * 25 24 23 44 44 H 1.08999 * 109.51962 * 62.30008 * 26 25 24 45 45 H 1.09001 * 109.52079 * 182.41817 * 26 25 24 46 46 H 1.08000 * 119.92014 * 179.71088 * 27 12 11 47 47 H 1.08000 * 120.09020 * 180.25552 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.0966 1.6964 -1.2125 5 1 1.2779 2.7464 -0.0006 6 1 3.0966 1.6964 1.2125 7 6 2.0082 -1.2115 -0.0005 8 1 3.0858 -1.2129 -0.0730 9 6 1.3057 -2.4322 0.0937 10 6 1.8650 -3.5186 0.7947 11 6 1.1804 -4.6949 0.8809 12 6 -0.0702 -4.8241 0.2769 13 7 -0.7628 -6.0285 0.3689 14 6 -0.6812 -6.7687 1.4923 15 8 0.0578 -6.4249 2.3944 16 7 -1.4186 -7.8901 1.6155 17 6 -1.3295 -8.6949 2.8363 18 6 -2.2600 -9.9038 2.7193 19 1 -3.2712 -9.5636 2.4959 20 8 -1.8018 -10.7578 1.6692 21 6 -2.2618 -10.6757 4.0403 22 6 -3.1935 -11.8861 3.9252 23 6 -3.2499 -12.6070 5.2746 24 8 -3.6937 -11.6955 6.2818 25 6 -2.8359 -10.5677 6.4669 26 6 -2.7627 -9.7649 5.1653 27 6 -0.6279 -3.7548 -0.4238 28 6 0.0420 -2.5702 -0.5134 29 1 -0.4850 0.8400 -0.0004 30 1 2.8333 -3.4202 1.2626 31 1 1.6080 -5.5288 1.4176 32 1 -1.3041 -6.3348 -0.3755 33 1 -2.0083 -8.1642 0.8958 34 1 -1.6255 -8.0896 3.6931 35 1 -0.3037 -9.0382 2.9711 36 1 -0.9066 -11.0986 1.8018 37 1 -1.2508 -11.0137 4.2680 38 1 -2.8132 -12.5673 3.1640 39 1 -4.1932 -11.5513 3.6490 40 1 -3.9447 -13.4444 5.2105 41 1 -2.2571 -12.9769 5.5310 42 1 -3.2324 -9.9360 7.2618 43 1 -1.8377 -10.9109 6.7389 44 1 -3.7538 -9.3872 4.9142 45 1 -2.0753 -8.9284 5.2915 46 1 -1.5945 -3.8637 -0.8929 47 1 -0.3929 -1.7417 -1.0528 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265563726.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:23 Heat of formation + Delta-G solvation = -113.709121 kcal Electronic energy + Delta-G solvation = -27955.445862 eV Core-core repulsion = 23909.487241 eV Total energy + Delta-G solvation = -4045.958621 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 3.56 seconds Orbital eigenvalues (eV) -40.34285 -39.72161 -38.01598 -37.23002 -34.54786 -34.16912 -33.95798 -32.81145 -31.53050 -29.62265 -29.29900 -28.34239 -25.61406 -24.52819 -23.83744 -22.26084 -21.57294 -20.93161 -20.64378 -20.00365 -18.02898 -17.41725 -17.22421 -16.54778 -16.52506 -16.30016 -15.87201 -15.24688 -15.07187 -14.91782 -14.69404 -14.63416 -14.00451 -13.85358 -13.72183 -13.55570 -13.07112 -12.76191 -12.63797 -12.37857 -12.16135 -12.07229 -11.75724 -11.66363 -11.41403 -11.31977 -11.10634 -11.01309 -10.98760 -10.81085 -10.69746 -10.46613 -10.09461 -9.81170 -9.51349 -9.43792 -9.21237 -8.94603 -8.82603 -7.50256 -6.79675 -6.57480 -4.29799 2.69297 2.97316 3.10881 3.12530 3.14394 3.20206 3.49272 3.69659 3.89930 4.01150 4.10083 4.27253 4.39004 4.56642 4.64442 4.71337 4.74640 4.81957 4.85331 4.97980 5.08429 5.22831 5.28557 5.30987 5.41756 5.53110 5.60451 5.68264 5.70015 5.71715 5.90842 6.22854 6.45291 6.56745 6.79929 6.80256 6.85133 7.08359 7.18793 7.21045 7.30580 7.44447 7.69074 7.89855 8.00873 8.13256 8.34862 8.49637 8.67753 8.96093 8.97211 9.12015 10.33796 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.028012 B = 0.001847 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.330635 B =15152.382030 C =15589.248656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.069 3.931 3 Si 0.915 3.085 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.462 4.462 8 H 0.075 0.925 9 C 0.097 3.903 10 C -0.204 4.204 11 C -0.087 4.087 12 C 0.024 3.976 13 N -0.667 5.667 14 C 0.694 3.306 15 O -0.580 6.580 16 N -0.748 5.748 17 C 0.108 3.892 18 C 0.103 3.897 19 H 0.106 0.894 20 O -0.556 6.556 21 C -0.117 4.117 22 C -0.144 4.144 23 C 0.059 3.941 24 O -0.385 6.385 25 C 0.061 3.939 26 C -0.157 4.157 27 C -0.124 4.124 28 C -0.140 4.140 29 H 0.277 0.723 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.392 0.608 33 H 0.396 0.604 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.377 0.623 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.049 0.951 42 H 0.096 0.904 43 H 0.051 0.949 44 H 0.076 0.924 45 H 0.083 0.917 46 H 0.090 0.910 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.588 -21.726 6.070 23.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.145 4.145 3 Si 0.740 3.260 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.493 4.493 8 H 0.093 0.907 9 C 0.095 3.905 10 C -0.224 4.224 11 C -0.107 4.107 12 C -0.069 4.069 13 N -0.313 5.313 14 C 0.395 3.605 15 O -0.457 6.457 16 N -0.406 5.406 17 C -0.017 4.017 18 C 0.043 3.957 19 H 0.124 0.876 20 O -0.361 6.361 21 C -0.136 4.136 22 C -0.182 4.182 23 C -0.017 4.017 24 O -0.303 6.303 25 C -0.016 4.016 26 C -0.194 4.194 27 C -0.144 4.144 28 C -0.160 4.160 29 H 0.088 0.912 30 H 0.113 0.887 31 H 0.126 0.874 32 H 0.225 0.775 33 H 0.229 0.771 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.224 0.776 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.111 0.889 41 H 0.067 0.933 42 H 0.114 0.886 43 H 0.069 0.931 44 H 0.095 0.905 45 H 0.101 0.899 46 H 0.108 0.892 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.868 -21.134 6.793 23.552 hybrid contribution 0.523 0.511 -0.474 0.872 sum -7.345 -20.623 6.319 22.785 Atomic orbital electron populations 1.69759 1.07243 1.28693 1.38454 1.25865 0.94942 1.01092 0.92645 0.86258 0.79780 0.80206 0.79716 1.19104 1.20490 1.19149 1.19442 0.94649 0.90225 1.45000 0.90720 1.17716 0.92341 0.92023 0.88438 1.20801 1.01180 0.94952 1.05487 1.20414 0.92785 0.97914 0.99593 1.17076 0.93741 0.85006 1.11070 1.42109 1.51663 1.22106 1.15375 1.16028 0.81280 0.80058 0.83152 1.90905 1.42315 1.71653 1.40869 1.44969 1.48632 1.26348 1.20613 1.21886 0.99957 0.92037 0.87831 1.22206 0.98489 0.88276 0.86718 0.87649 1.86589 1.36460 1.66887 1.46199 1.21831 1.00344 0.96306 0.95125 1.22148 1.00525 0.97403 0.98144 1.22599 0.99945 0.92007 0.87182 1.87945 1.50247 1.35006 1.57150 1.22584 0.94498 0.87523 0.96955 1.22322 1.03036 0.98857 0.95233 1.20296 0.98393 0.93054 1.02674 1.21176 0.97304 0.95447 1.02090 0.91173 0.88663 0.87415 0.77507 0.77054 0.90603 0.91611 0.77580 0.90368 0.90141 0.90881 0.88859 0.93261 0.88616 0.93082 0.90536 0.89866 0.89161 0.85042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.45 10.60 55.54 0.59 -20.86 16 2 C 0.07 1.77 5.42 -17.34 -0.09 1.68 16 3 Si 0.92 19.25 29.56 -169.99 -5.03 14.23 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.46 -12.49 9.02 -37.85 -0.34 -12.83 16 8 H 0.07 1.93 7.85 -52.49 -0.41 1.52 16 9 C 0.10 2.65 5.55 -106.80 -0.59 2.06 16 10 C -0.20 -5.26 9.74 -39.26 -0.38 -5.65 16 11 C -0.09 -2.13 8.61 -39.79 -0.34 -2.47 16 12 C 0.02 0.54 6.31 -83.57 -0.53 0.01 16 13 N -0.67 -11.95 5.31 -14.10 -0.07 -12.02 16 14 C 0.69 12.38 8.40 -86.92 -0.73 11.65 16 15 O -0.58 -12.85 13.76 5.29 0.07 -12.78 16 16 N -0.75 -9.29 5.51 -65.23 -0.36 -9.65 16 17 C 0.11 1.10 5.10 -4.04 -0.02 1.08 16 18 C 0.10 0.75 2.58 -26.73 -0.07 0.68 16 19 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 20 O -0.56 -4.15 12.68 -35.23 -0.45 -4.60 16 21 C -0.12 -0.73 2.04 -90.44 -0.18 -0.92 16 22 C -0.14 -0.89 5.23 -26.59 -0.14 -1.03 16 23 C 0.06 0.38 6.84 37.20 0.25 0.64 16 24 O -0.38 -3.37 10.77 -35.23 -0.38 -3.75 16 25 C 0.06 0.43 6.84 37.21 0.25 0.69 16 26 C -0.16 -1.08 4.99 -26.59 -0.13 -1.21 16 27 C -0.12 -2.86 9.90 -39.79 -0.39 -3.25 16 28 C -0.14 -3.65 8.62 -39.25 -0.34 -3.99 16 29 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 30 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 31 H 0.11 2.62 6.22 -52.49 -0.33 2.30 16 32 H 0.39 5.52 8.83 -40.82 -0.36 5.16 16 33 H 0.40 3.98 8.49 -40.82 -0.35 3.64 16 34 H 0.08 0.85 6.27 -51.93 -0.33 0.52 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.38 1.85 9.05 45.56 0.41 2.26 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.46 7.79 -51.93 -0.40 0.05 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 42 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.08 0.59 6.52 -51.93 -0.34 0.25 16 46 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 47 H 0.13 3.53 6.13 -52.49 -0.32 3.20 16 LS Contribution 379.53 15.07 5.72 5.72 Total: -1.00 -32.78 379.53 -9.89 -42.67 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: -6.21 Total: 13.91 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -3.78 Total: -12.87 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: 0.15 Total: -42.54 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.75 Total: -21.13 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.23 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.78 -9.89 -42.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265563726.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.041 kcal (2) G-P(sol) polarization free energy of solvation -32.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.56 seconds