Wall clock time and date at job start Tue Mar 31 2020 23:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86800 * 120.00188 * 2 1 4 4 H 1.48499 * 109.47165 * 240.00099 * 3 2 1 5 5 H 1.48500 * 109.47015 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47393 * 119.99927 * 3 2 1 7 7 C 1.39893 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99986 * 175.55827 * 7 2 1 9 9 C 1.41160 * 120.00356 * 355.55222 * 7 2 1 10 10 C 1.40865 * 120.16689 * 214.78549 * 9 7 2 11 11 C 1.36374 * 119.82503 * 180.02562 * 10 9 7 12 12 C 1.39481 * 120.17109 * 0.02562 * 11 10 9 13 13 N 1.39238 * 119.83302 * 179.97438 * 12 11 10 14 14 C 1.34782 * 120.00404 * 35.29811 * 13 12 11 15 15 O 1.21585 * 119.99407 * 355.70378 * 14 13 12 16 16 N 1.34770 * 120.00453 * 175.71007 * 14 13 12 17 17 C 1.46501 * 120.00175 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.47306 * 180.02562 * 17 16 14 19 19 H 1.09005 * 109.46781 * 304.99843 * 18 17 16 20 20 O 1.42901 * 109.47467 * 64.99853 * 18 17 16 21 21 C 1.53000 * 109.47016 * 184.99853 * 18 17 16 22 22 C 1.53182 * 109.54119 * 179.97438 * 21 18 17 23 23 C 1.53091 * 109.16140 * 183.14993 * 22 21 18 24 24 O 1.42906 * 109.41142 * 57.61342 * 23 22 21 25 25 C 1.42901 * 114.09843 * 298.83648 * 24 23 22 26 26 C 1.53095 * 109.41263 * 61.16019 * 25 24 23 27 27 C 1.39475 * 120.33403 * 0.25070 * 12 11 10 28 28 C 1.36377 * 120.16895 * 359.44469 * 27 12 11 29 29 H 0.96999 * 119.99874 * 0.02562 * 1 2 3 30 30 H 1.07995 * 120.08789 * 0.02562 * 10 9 7 31 31 H 1.07996 * 119.91666 * 179.97438 * 11 10 9 32 32 H 0.97001 * 120.00109 * 215.29182 * 13 12 11 33 33 H 0.96998 * 119.99857 * 359.97438 * 16 14 13 34 34 H 1.09000 * 109.47309 * 59.99314 * 17 16 14 35 35 H 1.09002 * 109.46934 * 299.99796 * 17 16 14 36 36 H 0.96702 * 113.99589 * 59.99720 * 20 18 17 37 37 H 1.08997 * 109.61669 * 300.22058 * 21 18 17 38 38 H 1.08997 * 109.52000 * 63.24949 * 22 21 18 39 39 H 1.08994 * 109.52339 * 303.05770 * 22 21 18 40 40 H 1.08998 * 109.47843 * 177.59284 * 23 22 21 41 41 H 1.09002 * 109.48506 * 297.62930 * 23 22 21 42 42 H 1.08997 * 109.47931 * 181.14159 * 25 24 23 43 43 H 1.08999 * 109.48304 * 301.17720 * 25 24 23 44 44 H 1.08999 * 109.51962 * 62.30008 * 26 25 24 45 45 H 1.09001 * 109.52079 * 182.41817 * 26 25 24 46 46 H 1.08000 * 119.92014 * 179.71088 * 27 12 11 47 47 H 1.08000 * 120.09020 * 180.25552 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.0966 1.6964 -1.2125 5 1 1.2779 2.7464 -0.0006 6 1 3.0966 1.6964 1.2125 7 6 2.0082 -1.2115 -0.0005 8 1 3.0858 -1.2129 -0.0730 9 6 1.3057 -2.4322 0.0937 10 6 1.8650 -3.5186 0.7947 11 6 1.1804 -4.6949 0.8809 12 6 -0.0702 -4.8241 0.2769 13 7 -0.7628 -6.0285 0.3689 14 6 -0.6812 -6.7687 1.4923 15 8 0.0578 -6.4249 2.3944 16 7 -1.4186 -7.8901 1.6155 17 6 -1.3295 -8.6949 2.8363 18 6 -2.2600 -9.9038 2.7193 19 1 -3.2712 -9.5636 2.4959 20 8 -1.8018 -10.7578 1.6692 21 6 -2.2618 -10.6757 4.0403 22 6 -3.1935 -11.8861 3.9252 23 6 -3.2499 -12.6070 5.2746 24 8 -3.6937 -11.6955 6.2818 25 6 -2.8359 -10.5677 6.4669 26 6 -2.7627 -9.7649 5.1653 27 6 -0.6279 -3.7548 -0.4238 28 6 0.0420 -2.5702 -0.5134 29 1 -0.4850 0.8400 -0.0004 30 1 2.8333 -3.4202 1.2626 31 1 1.6080 -5.5288 1.4176 32 1 -1.3041 -6.3348 -0.3755 33 1 -2.0083 -8.1642 0.8958 34 1 -1.6255 -8.0896 3.6931 35 1 -0.3037 -9.0382 2.9711 36 1 -0.9066 -11.0986 1.8018 37 1 -1.2508 -11.0137 4.2680 38 1 -2.8132 -12.5673 3.1640 39 1 -4.1932 -11.5513 3.6490 40 1 -3.9447 -13.4444 5.2105 41 1 -2.2571 -12.9769 5.5310 42 1 -3.2324 -9.9360 7.2618 43 1 -1.8377 -10.9109 6.7389 44 1 -3.7538 -9.3872 4.9142 45 1 -2.0753 -8.9284 5.2915 46 1 -1.5945 -3.8637 -0.8929 47 1 -0.3929 -1.7417 -1.0528 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265563726.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:22 Heat of formation + Delta-G solvation = -137.833228 kcal Electronic energy + Delta-G solvation = -27956.491962 eV Core-core repulsion = 23909.487241 eV Total energy + Delta-G solvation = -4047.004720 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.48484 -40.64746 -39.30528 -38.42309 -36.18466 -35.36163 -34.71120 -34.50540 -32.06237 -31.47812 -30.87223 -29.54275 -26.92073 -25.77446 -24.42165 -23.45093 -22.87293 -22.56698 -21.69971 -21.15180 -19.47258 -19.10437 -18.45620 -17.68639 -17.17572 -17.03030 -16.88438 -16.67449 -16.22157 -16.07608 -15.68747 -15.62244 -15.36949 -15.01590 -14.68555 -14.53556 -14.51759 -14.15011 -13.98712 -13.59725 -13.45193 -13.21574 -13.12546 -12.81628 -12.75429 -12.72666 -12.47098 -12.26760 -11.97551 -11.83130 -11.55240 -11.39105 -11.35999 -11.24365 -11.08475 -10.97809 -10.65678 -10.37642 -10.08185 -9.44834 -8.67460 -8.48186 -6.30584 0.86255 1.16017 1.40160 1.49590 1.52535 1.74650 2.20047 2.26013 2.82988 2.98146 3.23893 3.41140 3.53292 3.69786 3.75957 3.84487 4.02125 4.13348 4.15572 4.32845 4.40549 4.43083 4.53310 4.55215 4.64006 4.72667 4.80278 4.82434 4.91335 4.94471 4.97209 5.13642 5.14938 5.16315 5.19970 5.34410 5.37807 5.44932 5.47799 5.70728 5.83028 6.04798 6.12798 6.26458 6.28154 6.41623 6.70088 6.75125 6.98753 7.02928 7.14909 7.65207 8.44394 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.028012 B = 0.001847 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.330635 B =15152.382030 C =15589.248656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.027 3.973 3 Si 0.988 3.012 4 H -0.258 1.258 5 H -0.268 1.268 6 H -0.266 1.266 7 C -0.499 4.499 8 H 0.072 0.928 9 C 0.064 3.936 10 C -0.219 4.219 11 C -0.098 4.098 12 C 0.041 3.959 13 N -0.660 5.660 14 C 0.692 3.308 15 O -0.625 6.625 16 N -0.725 5.725 17 C 0.105 3.895 18 C 0.120 3.880 19 H 0.107 0.893 20 O -0.563 6.563 21 C -0.111 4.111 22 C -0.138 4.138 23 C 0.055 3.945 24 O -0.407 6.407 25 C 0.058 3.942 26 C -0.155 4.155 27 C -0.121 4.121 28 C -0.157 4.157 29 H 0.284 0.716 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.414 0.586 33 H 0.411 0.589 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.389 0.611 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.064 0.936 40 H 0.102 0.898 41 H 0.058 0.942 42 H 0.098 0.902 43 H 0.058 0.942 44 H 0.070 0.930 45 H 0.079 0.921 46 H 0.124 0.876 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.438 -23.022 5.802 25.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.185 4.185 3 Si 0.809 3.191 4 H -0.182 1.182 5 H -0.193 1.193 6 H -0.191 1.191 7 C -0.529 4.529 8 H 0.090 0.910 9 C 0.062 3.938 10 C -0.239 4.239 11 C -0.118 4.118 12 C -0.053 4.053 13 N -0.308 5.308 14 C 0.392 3.608 15 O -0.505 6.505 16 N -0.382 5.382 17 C -0.019 4.019 18 C 0.060 3.940 19 H 0.125 0.875 20 O -0.370 6.370 21 C -0.130 4.130 22 C -0.176 4.176 23 C -0.022 4.022 24 O -0.326 6.326 25 C -0.018 4.018 26 C -0.193 4.193 27 C -0.142 4.142 28 C -0.177 4.177 29 H 0.095 0.905 30 H 0.114 0.886 31 H 0.125 0.875 32 H 0.251 0.749 33 H 0.248 0.752 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.239 0.761 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.083 0.917 40 H 0.120 0.880 41 H 0.077 0.923 42 H 0.116 0.884 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.098 0.902 46 H 0.142 0.858 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.765 -22.513 6.496 25.017 hybrid contribution 0.715 0.704 -0.354 1.064 sum -8.050 -21.809 6.142 24.045 Atomic orbital electron populations 1.69825 1.08541 1.29941 1.38764 1.26735 0.95834 1.04283 0.91653 0.85159 0.78487 0.75619 0.79805 1.18232 1.19273 1.19050 1.19680 0.94808 0.91323 1.47139 0.90956 1.18038 0.93445 0.92726 0.89608 1.20922 1.01582 0.95473 1.05914 1.20517 0.93744 0.97457 1.00111 1.17093 0.93009 0.86417 1.08756 1.41895 1.51518 1.20767 1.16572 1.16209 0.81251 0.80929 0.82387 1.90884 1.44342 1.72999 1.42317 1.44800 1.47155 1.24494 1.21719 1.22090 1.00732 0.92634 0.86455 1.22010 0.97546 0.87088 0.87328 0.87547 1.86574 1.37583 1.66659 1.46164 1.21783 1.00965 0.96102 0.94165 1.22090 0.99968 0.97276 0.98257 1.22749 1.00729 0.91928 0.86766 1.87917 1.51102 1.35661 1.57950 1.22658 0.94740 0.87333 0.97106 1.22292 1.02621 0.98857 0.95548 1.20533 0.99352 0.92018 1.02256 1.21163 0.97480 0.96360 1.02745 0.90531 0.88643 0.87470 0.74944 0.75203 0.91407 0.91829 0.76132 0.89421 0.89236 0.91697 0.87965 0.92340 0.88352 0.92330 0.91128 0.90237 0.85800 0.86295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.08 10.60 21.82 0.23 -44.85 16 2 C 0.03 1.38 5.42 85.24 0.46 1.84 16 3 Si 0.99 39.67 29.56 68.60 2.03 41.70 16 4 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 5 H -0.27 -10.16 7.11 99.48 0.71 -9.46 16 6 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 7 C -0.50 -27.81 9.02 23.39 0.21 -27.60 16 8 H 0.07 3.89 7.85 -2.91 -0.02 3.87 16 9 C 0.06 3.60 5.55 -21.27 -0.12 3.49 16 10 C -0.22 -11.63 9.74 22.48 0.22 -11.42 16 11 C -0.10 -4.84 8.61 22.13 0.19 -4.65 16 12 C 0.04 1.84 6.31 38.56 0.24 2.08 16 13 N -0.66 -22.31 5.31 -316.78 -1.68 -24.00 16 14 C 0.69 23.57 8.40 179.05 1.50 25.08 16 15 O -0.62 -27.37 13.76 -3.99 -0.05 -27.42 16 16 N -0.72 -16.35 5.51 -478.54 -2.64 -18.98 16 17 C 0.11 1.96 5.10 86.38 0.44 2.40 16 18 C 0.12 1.47 2.58 30.59 0.08 1.55 16 19 H 0.11 1.34 8.14 -2.38 -0.02 1.33 16 20 O -0.56 -6.74 12.68 -148.98 -1.89 -8.63 16 21 C -0.11 -1.17 2.04 -10.67 -0.02 -1.19 16 22 C -0.14 -1.41 5.23 30.69 0.16 -1.25 16 23 C 0.05 0.60 6.84 72.01 0.49 1.09 16 24 O -0.41 -6.64 10.77 -148.98 -1.60 -8.24 16 25 C 0.06 0.76 6.84 72.01 0.49 1.25 16 26 C -0.16 -1.95 4.99 30.68 0.15 -1.80 16 27 C -0.12 -5.50 9.90 22.13 0.22 -5.28 16 28 C -0.16 -8.33 8.62 22.48 0.19 -8.13 16 29 H 0.28 13.84 8.30 -92.71 -0.77 13.07 16 30 H 0.10 4.88 8.06 -2.91 -0.02 4.86 16 31 H 0.11 5.28 6.22 -2.91 -0.02 5.26 16 32 H 0.41 10.40 8.83 -92.71 -0.82 9.58 16 33 H 0.41 6.98 8.49 -92.71 -0.79 6.19 16 34 H 0.07 1.43 6.27 -2.39 -0.01 1.41 16 35 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.39 2.64 9.05 -74.06 -0.67 1.97 16 37 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.09 0.77 7.79 -2.39 -0.02 0.75 16 39 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.10 0.91 8.14 -2.39 -0.02 0.90 16 41 H 0.06 0.53 8.14 -2.39 -0.02 0.52 16 42 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.08 1.06 6.52 -2.39 -0.02 1.04 16 46 H 0.12 4.71 8.06 -2.91 -0.02 4.68 16 47 H 0.12 6.54 6.13 -2.91 -0.02 6.52 16 Total: -1.00 -72.07 379.53 -1.94 -74.01 By element: Atomic # 1 Polarization: 40.20 SS G_CDS: -1.25 Total: 38.95 kcal Atomic # 6 Polarization: -27.46 SS G_CDS: 4.92 Total: -22.54 kcal Atomic # 7 Polarization: -83.74 SS G_CDS: -4.09 Total: -87.83 kcal Atomic # 8 Polarization: -40.74 SS G_CDS: -3.55 Total: -44.29 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 2.03 Total: 41.70 kcal Total: -72.07 -1.94 -74.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265563726.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.821 kcal (2) G-P(sol) polarization free energy of solvation -72.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds