Wall clock time and date at job start Tue Mar 31 2020 19:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47190 * 2 1 4 4 O 1.42901 * 109.47073 * 239.99802 * 2 1 3 5 5 C 1.42905 * 113.99745 * 90.00139 * 4 2 1 6 6 C 1.53000 * 109.46941 * 179.97438 * 5 4 2 7 7 H 1.08995 * 109.82606 * 305.56845 * 6 5 4 8 8 C 1.54384 * 109.83222 * 184.58742 * 6 5 4 9 9 C 1.55298 * 102.25436 * 219.13325 * 8 6 5 10 10 C 1.54943 * 100.94370 * 34.12950 * 9 8 6 11 11 O 1.43236 * 109.82994 * 66.45377 * 6 5 4 12 12 C 1.50704 * 109.47303 * 119.99961 * 2 1 3 13 13 O 1.20822 * 119.99846 * 119.99607 * 12 2 1 14 14 O 1.34226 * 119.99936 * 300.00562 * 12 2 1 15 15 C 1.45197 * 116.99870 * 179.97438 * 14 12 2 16 16 C 1.50706 * 109.46980 * 179.97438 * 15 14 12 17 17 C 1.38630 * 119.75209 * 89.99830 * 16 15 14 18 18 C 1.37620 * 120.25072 * 180.02562 * 17 16 15 19 19 C 1.40719 * 119.74290 * 359.97438 * 18 17 16 20 20 C 1.41392 * 120.24158 * 180.02562 * 19 18 17 21 21 H 1.08005 * 119.99930 * 155.58789 * 20 19 18 22 22 C 1.39946 * 120.00456 * 335.31757 * 20 19 18 23 23 N 1.30827 * 119.99750 * 342.55579 * 22 20 19 24 24 Si 1.86793 * 120.00145 * 162.55587 * 22 20 19 25 25 H 1.48500 * 109.47265 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47352 * 119.99863 * 24 22 20 27 27 H 1.48500 * 109.47201 * 240.00187 * 24 22 20 28 28 C 1.40718 * 119.51094 * 0.28022 * 19 18 17 29 29 C 1.37621 * 119.74212 * 359.42214 * 28 19 18 30 30 H 1.08999 * 109.47155 * 299.99604 * 1 2 3 31 31 H 1.09002 * 109.47451 * 60.00178 * 1 2 3 32 32 H 1.09005 * 109.47190 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47179 * 299.99696 * 5 4 2 34 34 H 1.08998 * 109.47188 * 60.00162 * 5 4 2 35 35 H 1.09010 * 110.84291 * 337.31955 * 8 6 5 36 36 H 1.08997 * 110.85065 * 100.93824 * 8 6 5 37 37 H 1.09000 * 111.12554 * 276.21145 * 9 8 6 38 38 H 1.08997 * 111.12527 * 152.05009 * 9 8 6 39 39 H 1.09000 * 110.31418 * 204.63862 * 10 9 8 40 40 H 1.09003 * 110.39312 * 82.51500 * 10 9 8 41 41 H 1.08991 * 109.47603 * 60.00094 * 15 14 12 42 42 H 1.09005 * 109.47100 * 299.99093 * 15 14 12 43 43 H 1.08005 * 119.87533 * 0.02562 * 17 16 15 44 44 H 1.08001 * 120.13122 * 180.02562 * 18 17 16 45 45 H 0.96989 * 120.00028 * 179.97438 * 23 22 20 46 46 H 1.08000 * 120.12333 * 179.69941 * 28 19 18 47 47 H 1.08003 * 119.87021 * 180.27249 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.2000 0.1829 -2.2941 6 6 2.7090 -0.6406 -3.4788 7 1 3.6026 -1.1930 -3.1883 8 6 3.0307 0.2927 -4.6658 9 6 2.5293 -0.5344 -5.8808 10 6 1.3067 -1.2566 -5.2606 11 8 1.6922 -1.5531 -3.9089 12 6 2.0324 -0.7104 1.2305 13 8 2.7269 -1.6928 1.1196 14 8 1.7080 -0.2519 2.4496 15 6 2.2267 -0.9864 3.5896 16 6 1.7628 -0.3292 4.8640 17 6 0.5678 -0.7233 5.4457 18 6 0.1341 -0.1297 6.6091 19 6 0.9089 0.8805 7.2084 20 6 0.4736 1.4971 8.4040 21 1 1.1917 1.9569 9.0669 22 6 -0.8882 1.5168 8.7256 23 7 -1.7825 1.2853 7.7992 24 14 -1.4291 1.8734 10.4776 25 1 -0.2333 2.1001 11.3284 26 1 -2.2850 3.0868 10.4942 27 1 -2.1989 0.7173 11.0030 28 6 2.1175 1.2763 6.6060 29 6 2.5347 0.6645 5.4460 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.2538 0.6546 -2.5589 34 1 2.9319 0.9513 -2.0450 35 1 2.4814 1.2305 -4.5817 36 1 4.1030 0.4749 -4.7365 37 1 3.2840 -1.2498 -6.2074 38 1 2.2266 0.1164 -6.7010 39 1 1.0951 -2.1773 -5.8043 40 1 0.4343 -0.6031 -5.2705 41 1 3.3162 -0.9861 3.5569 42 1 1.8625 -2.0132 3.5565 43 1 -0.0251 -1.4993 4.9842 44 1 -0.7970 -0.4386 7.0609 45 1 -2.7263 1.2985 8.0222 46 1 2.7176 2.0540 7.0548 47 1 3.4641 0.9636 4.9843 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271909200.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:40 Heat of formation + Delta-G solvation = -167.329932 kcal Electronic energy + Delta-G solvation = -27592.740500 eV Core-core repulsion = 23512.163955 eV Total energy + Delta-G solvation = -4080.576545 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.30252 -39.81869 -38.05329 -37.49500 -35.87518 -33.87775 -32.65212 -32.20754 -30.80450 -30.22739 -29.36859 -27.25271 -25.98972 -24.69658 -23.47444 -22.15286 -21.52792 -21.09366 -20.59805 -20.03329 -17.66894 -17.42557 -17.37491 -16.96350 -16.37401 -16.18198 -15.82145 -15.38633 -15.16904 -14.87038 -14.33390 -13.97560 -13.89989 -13.78332 -13.49423 -13.10593 -12.70290 -12.62136 -12.40713 -12.29899 -12.14457 -12.10242 -12.01367 -11.74308 -11.68928 -11.57462 -11.43546 -11.22732 -11.19100 -10.98777 -10.82456 -10.43826 -10.21782 -10.12080 -9.82984 -9.79772 -9.63233 -9.47111 -9.22924 -7.56554 -7.45215 -6.86920 -4.46974 2.29852 2.47017 2.80309 3.00286 3.02856 3.07666 3.13835 3.47301 3.77857 3.85638 4.03305 4.39340 4.48180 4.52942 4.69744 4.75893 4.82445 4.86112 4.98125 5.04573 5.09307 5.18362 5.24816 5.32653 5.39707 5.52388 5.60052 5.62149 5.62599 5.68845 5.72833 5.76336 6.05973 6.11461 6.25218 6.31707 6.68599 6.85426 6.88625 6.91532 6.97330 7.18112 7.26295 7.51522 7.73706 7.95700 8.00920 8.12757 8.18941 8.53816 8.78238 8.86422 10.06819 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.029986 B = 0.001763 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.559052 B =15874.247072 C =16219.481702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.096 3.904 3 H 0.096 0.904 4 O -0.351 6.351 5 C 0.050 3.950 6 C 0.083 3.917 7 H 0.091 0.909 8 C -0.149 4.149 9 C -0.156 4.156 10 C 0.045 3.955 11 O -0.365 6.365 12 C 0.455 3.545 13 O -0.500 6.500 14 O -0.347 6.347 15 C 0.137 3.863 16 C -0.235 4.235 17 C -0.075 4.075 18 C -0.170 4.170 19 C 0.118 3.882 20 C -0.456 4.456 21 H 0.081 0.919 22 C 0.075 3.925 23 N -0.785 5.785 24 Si 0.910 3.090 25 H -0.259 1.259 26 H -0.274 1.274 27 H -0.271 1.271 28 C -0.230 4.230 29 C -0.064 4.064 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.089 0.911 44 H 0.120 0.880 45 H 0.282 0.718 46 H 0.095 0.905 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.963 0.492 -22.105 22.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.037 3.963 3 H 0.113 0.887 4 O -0.269 6.269 5 C -0.026 4.026 6 C 0.026 3.974 7 H 0.109 0.891 8 C -0.187 4.187 9 C -0.193 4.193 10 C -0.031 4.031 11 O -0.284 6.284 12 C 0.297 3.703 13 O -0.387 6.387 14 O -0.264 6.264 15 C 0.065 3.935 16 C -0.236 4.236 17 C -0.094 4.094 18 C -0.189 4.189 19 C 0.115 3.885 20 C -0.485 4.485 21 H 0.099 0.901 22 C -0.144 4.144 23 N -0.410 5.410 24 Si 0.734 3.266 25 H -0.183 1.183 26 H -0.199 1.199 27 H -0.196 1.196 28 C -0.249 4.249 29 C -0.083 4.083 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.107 0.893 44 H 0.138 0.862 45 H 0.093 0.907 46 H 0.113 0.887 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.870 -0.178 -21.997 22.335 hybrid contribution -0.268 0.613 0.589 0.891 sum 3.602 0.435 -21.408 21.713 Atomic orbital electron populations 1.22195 0.92520 1.04063 1.03730 1.21430 0.95736 0.95769 0.83331 0.88656 1.88072 1.86622 1.33816 1.18425 1.23076 1.00243 0.92887 0.86440 1.22761 0.91797 0.90543 0.92342 0.89108 1.23119 1.02972 0.99022 0.93537 1.23269 0.98441 0.99538 0.98087 1.23426 0.96480 1.00136 0.83099 1.88588 1.56824 1.54550 1.28476 1.23272 0.78132 0.83353 0.85573 1.90639 1.35120 1.25464 1.87514 1.86693 1.69510 1.56130 1.14087 1.21754 0.97265 0.93848 0.80647 1.18685 1.00389 1.07356 0.97199 1.20550 0.94131 0.98519 0.96176 1.21299 1.01860 0.98381 0.97369 1.17700 0.90347 0.89115 0.91353 1.19708 0.92424 1.31595 1.04734 0.90137 1.25974 0.96692 0.92749 0.99009 1.69832 1.02741 1.34620 1.33800 0.86232 0.79444 0.78751 0.82174 1.18286 1.19898 1.19578 1.20968 1.00998 1.04269 0.98667 1.20398 0.97295 0.94856 0.95707 0.89596 0.91267 0.91123 0.92436 0.91986 0.90106 0.89438 0.90150 0.89742 0.89653 0.92229 0.92066 0.91940 0.89263 0.86218 0.90682 0.88715 0.89298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 9.46 37.16 0.35 -1.65 16 2 C 0.10 1.30 3.24 -27.88 -0.09 1.21 16 3 H 0.10 1.04 7.79 -51.93 -0.40 0.63 16 4 O -0.35 -4.99 9.51 -58.89 -0.56 -5.55 16 5 C 0.05 0.50 5.28 37.16 0.20 0.70 16 6 C 0.08 0.78 3.81 -26.01 -0.10 0.68 16 7 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 8 C -0.15 -0.86 6.54 -24.79 -0.16 -1.02 16 9 C -0.16 -0.82 7.16 -24.49 -0.18 -1.00 16 10 C 0.05 0.33 7.78 38.18 0.30 0.63 16 11 O -0.37 -4.19 11.00 -37.80 -0.42 -4.60 16 12 C 0.46 7.97 7.33 36.01 0.26 8.23 16 13 O -0.50 -10.14 16.25 -25.47 -0.41 -10.56 16 14 O -0.35 -6.56 10.11 -39.25 -0.40 -6.96 16 15 C 0.14 2.67 5.58 36.01 0.20 2.87 16 16 C -0.23 -5.22 5.54 -104.33 -0.58 -5.80 16 17 C -0.08 -1.76 9.67 -39.66 -0.38 -2.14 16 18 C -0.17 -4.35 8.70 -38.87 -0.34 -4.69 16 19 C 0.12 3.08 5.57 -106.82 -0.60 2.48 16 20 C -0.46 -11.78 9.05 -37.74 -0.34 -12.13 16 21 H 0.08 2.00 7.91 -52.48 -0.41 1.58 16 22 C 0.07 1.82 5.15 -17.34 -0.09 1.73 16 23 N -0.79 -19.78 10.95 55.55 0.61 -19.17 16 24 Si 0.91 18.09 29.59 -169.99 -5.03 13.06 16 25 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 26 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 27 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 28 C -0.23 -5.55 9.80 -38.87 -0.38 -5.93 16 29 C -0.06 -1.44 9.67 -39.66 -0.38 -1.82 16 30 H 0.09 1.05 8.11 -51.93 -0.42 0.63 16 31 H 0.07 0.67 7.87 -51.93 -0.41 0.26 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.50 7.87 -51.93 -0.41 0.09 16 34 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 35 H 0.08 0.39 7.85 -51.92 -0.41 -0.02 16 36 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 1.14 8.07 -51.93 -0.42 0.72 16 42 H 0.06 1.19 8.07 -51.93 -0.42 0.77 16 43 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 44 H 0.12 3.15 6.16 -52.49 -0.32 2.82 16 45 H 0.28 6.41 8.30 -40.82 -0.34 6.08 16 46 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 47 H 0.09 1.76 8.06 -52.48 -0.42 1.33 16 LS Contribution 395.30 15.07 5.96 5.96 Total: -1.00 -30.98 395.30 -9.97 -40.95 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -7.41 Total: 4.51 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -2.31 Total: -17.64 kcal Atomic # 7 Polarization: -19.78 SS G_CDS: 0.61 Total: -19.17 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -1.79 Total: -27.66 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.98 -9.97 -40.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271909200.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.385 kcal (2) G-P(sol) polarization free energy of solvation -30.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds