Wall clock time and date at job start Tue Mar 31 2020 19:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47190 * 2 1 4 4 O 1.42901 * 109.47073 * 239.99802 * 2 1 3 5 5 C 1.42905 * 113.99745 * 90.00139 * 4 2 1 6 6 C 1.53000 * 109.46941 * 179.97438 * 5 4 2 7 7 H 1.08995 * 109.82606 * 305.56845 * 6 5 4 8 8 C 1.54384 * 109.83222 * 184.58742 * 6 5 4 9 9 C 1.55298 * 102.25436 * 219.13325 * 8 6 5 10 10 C 1.54943 * 100.94370 * 34.12950 * 9 8 6 11 11 O 1.43236 * 109.82994 * 66.45377 * 6 5 4 12 12 C 1.50704 * 109.47303 * 119.99961 * 2 1 3 13 13 O 1.20822 * 119.99846 * 119.99607 * 12 2 1 14 14 O 1.34226 * 119.99936 * 300.00562 * 12 2 1 15 15 C 1.45197 * 116.99870 * 179.97438 * 14 12 2 16 16 C 1.50706 * 109.46980 * 179.97438 * 15 14 12 17 17 C 1.38630 * 119.75209 * 89.99830 * 16 15 14 18 18 C 1.37620 * 120.25072 * 180.02562 * 17 16 15 19 19 C 1.40719 * 119.74290 * 359.97438 * 18 17 16 20 20 C 1.41392 * 120.24158 * 180.02562 * 19 18 17 21 21 H 1.08005 * 119.99930 * 155.58789 * 20 19 18 22 22 C 1.39946 * 120.00456 * 335.31757 * 20 19 18 23 23 N 1.30827 * 119.99750 * 342.55579 * 22 20 19 24 24 Si 1.86793 * 120.00145 * 162.55587 * 22 20 19 25 25 H 1.48500 * 109.47265 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47352 * 119.99863 * 24 22 20 27 27 H 1.48500 * 109.47201 * 240.00187 * 24 22 20 28 28 C 1.40718 * 119.51094 * 0.28022 * 19 18 17 29 29 C 1.37621 * 119.74212 * 359.42214 * 28 19 18 30 30 H 1.08999 * 109.47155 * 299.99604 * 1 2 3 31 31 H 1.09002 * 109.47451 * 60.00178 * 1 2 3 32 32 H 1.09005 * 109.47190 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47179 * 299.99696 * 5 4 2 34 34 H 1.08998 * 109.47188 * 60.00162 * 5 4 2 35 35 H 1.09010 * 110.84291 * 337.31955 * 8 6 5 36 36 H 1.08997 * 110.85065 * 100.93824 * 8 6 5 37 37 H 1.09000 * 111.12554 * 276.21145 * 9 8 6 38 38 H 1.08997 * 111.12527 * 152.05009 * 9 8 6 39 39 H 1.09000 * 110.31418 * 204.63862 * 10 9 8 40 40 H 1.09003 * 110.39312 * 82.51500 * 10 9 8 41 41 H 1.08991 * 109.47603 * 60.00094 * 15 14 12 42 42 H 1.09005 * 109.47100 * 299.99093 * 15 14 12 43 43 H 1.08005 * 119.87533 * 0.02562 * 17 16 15 44 44 H 1.08001 * 120.13122 * 180.02562 * 18 17 16 45 45 H 0.96989 * 120.00028 * 179.97438 * 23 22 20 46 46 H 1.08000 * 120.12333 * 179.69941 * 28 19 18 47 47 H 1.08003 * 119.87021 * 180.27249 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.2000 0.1829 -2.2941 6 6 2.7090 -0.6406 -3.4788 7 1 3.6026 -1.1930 -3.1883 8 6 3.0307 0.2927 -4.6658 9 6 2.5293 -0.5344 -5.8808 10 6 1.3067 -1.2566 -5.2606 11 8 1.6922 -1.5531 -3.9089 12 6 2.0324 -0.7104 1.2305 13 8 2.7269 -1.6928 1.1196 14 8 1.7080 -0.2519 2.4496 15 6 2.2267 -0.9864 3.5896 16 6 1.7628 -0.3292 4.8640 17 6 0.5678 -0.7233 5.4457 18 6 0.1341 -0.1297 6.6091 19 6 0.9089 0.8805 7.2084 20 6 0.4736 1.4971 8.4040 21 1 1.1917 1.9569 9.0669 22 6 -0.8882 1.5168 8.7256 23 7 -1.7825 1.2853 7.7992 24 14 -1.4291 1.8734 10.4776 25 1 -0.2333 2.1001 11.3284 26 1 -2.2850 3.0868 10.4942 27 1 -2.1989 0.7173 11.0030 28 6 2.1175 1.2763 6.6060 29 6 2.5347 0.6645 5.4460 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.2538 0.6546 -2.5589 34 1 2.9319 0.9513 -2.0450 35 1 2.4814 1.2305 -4.5817 36 1 4.1030 0.4749 -4.7365 37 1 3.2840 -1.2498 -6.2074 38 1 2.2266 0.1164 -6.7010 39 1 1.0951 -2.1773 -5.8043 40 1 0.4343 -0.6031 -5.2705 41 1 3.3162 -0.9861 3.5569 42 1 1.8625 -2.0132 3.5565 43 1 -0.0251 -1.4993 4.9842 44 1 -0.7970 -0.4386 7.0609 45 1 -2.7263 1.2985 8.0222 46 1 2.7176 2.0540 7.0548 47 1 3.4641 0.9636 4.9843 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271909200.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:36 Heat of formation + Delta-G solvation = -183.009243 kcal Electronic energy + Delta-G solvation = -27593.420406 eV Core-core repulsion = 23512.163955 eV Total energy + Delta-G solvation = -4081.256451 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 17.68 seconds Orbital eigenvalues (eV) -41.64905 -40.55168 -39.56525 -38.81601 -37.38628 -35.69676 -33.43208 -33.03479 -32.43141 -31.24405 -31.03721 -28.97965 -26.75081 -26.04551 -24.93370 -22.96370 -22.67544 -22.22265 -21.96541 -21.70545 -19.27784 -18.82496 -18.33721 -18.03763 -17.60993 -17.17780 -17.07226 -16.83513 -16.17657 -16.00513 -15.71429 -15.43155 -15.41483 -14.68682 -14.48719 -14.33380 -14.08694 -13.86779 -13.85985 -13.55747 -13.49390 -13.37496 -13.12584 -12.85007 -12.70768 -12.65347 -12.61237 -12.48723 -12.21853 -12.10058 -12.08594 -11.73300 -11.70903 -11.57611 -11.38148 -11.29082 -11.05819 -10.75694 -10.49130 -9.44615 -9.33836 -8.69022 -6.40294 0.67719 1.08291 1.10995 1.35330 1.40094 1.54552 1.65160 2.19582 2.60729 2.78637 2.96392 3.53996 3.57476 3.75276 3.80690 3.87426 3.94096 3.95431 4.07102 4.09080 4.16832 4.24051 4.38053 4.42874 4.45957 4.48536 4.54135 4.60772 4.69102 4.73787 4.81539 4.90557 4.94752 5.00261 5.04245 5.11753 5.14519 5.25852 5.29474 5.38198 5.43284 5.64559 5.87245 5.92897 6.05273 6.13666 6.16891 6.31084 6.63859 6.71648 6.88005 6.96414 8.27756 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.029986 B = 0.001763 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.559052 B =15874.247072 C =16219.481702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.101 3.899 3 H 0.128 0.872 4 O -0.381 6.381 5 C 0.043 3.957 6 C 0.075 3.925 7 H 0.073 0.927 8 C -0.141 4.141 9 C -0.149 4.149 10 C 0.035 3.965 11 O -0.403 6.403 12 C 0.454 3.546 13 O -0.532 6.532 14 O -0.353 6.353 15 C 0.140 3.860 16 C -0.230 4.230 17 C -0.080 4.080 18 C -0.192 4.192 19 C 0.087 3.913 20 C -0.491 4.491 21 H 0.080 0.920 22 C 0.035 3.965 23 N -0.818 5.818 24 Si 0.985 3.015 25 H -0.257 1.257 26 H -0.265 1.265 27 H -0.264 1.264 28 C -0.243 4.243 29 C -0.064 4.064 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.107 0.893 39 H 0.088 0.912 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.291 0.709 46 H 0.104 0.896 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.223 1.871 -23.638 24.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.043 3.957 3 H 0.145 0.855 4 O -0.301 6.301 5 C -0.032 4.032 6 C 0.017 3.983 7 H 0.091 0.909 8 C -0.178 4.178 9 C -0.187 4.187 10 C -0.041 4.041 11 O -0.323 6.323 12 C 0.298 3.702 13 O -0.422 6.422 14 O -0.270 6.270 15 C 0.068 3.932 16 C -0.231 4.231 17 C -0.099 4.099 18 C -0.212 4.212 19 C 0.084 3.916 20 C -0.520 4.520 21 H 0.098 0.902 22 C -0.181 4.181 23 N -0.443 5.443 24 Si 0.805 3.195 25 H -0.180 1.180 26 H -0.189 1.189 27 H -0.189 1.189 28 C -0.262 4.262 29 C -0.083 4.083 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.114 0.886 36 H 0.119 0.881 37 H 0.098 0.902 38 H 0.125 0.875 39 H 0.106 0.894 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.101 0.899 46 H 0.122 0.878 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.134 1.207 -23.562 23.952 hybrid contribution -0.292 0.115 0.879 0.933 sum 3.843 1.322 -22.683 23.044 Atomic orbital electron populations 1.22176 0.91375 1.03462 1.04951 1.21549 0.96378 0.96351 0.81465 0.85477 1.88049 1.86848 1.35787 1.19388 1.23375 1.01735 0.92991 0.85144 1.22893 0.90797 0.90954 0.93625 0.90904 1.23127 1.04115 0.98752 0.91800 1.23269 0.97377 0.99603 0.98411 1.23643 0.97749 1.00894 0.81807 1.88545 1.57428 1.55786 1.30548 1.24166 0.77161 0.83000 0.85917 1.90623 1.36743 1.27056 1.87748 1.86658 1.69655 1.56059 1.14619 1.21600 0.97917 0.93634 0.80033 1.18958 0.99510 1.06591 0.98066 1.20770 0.94856 0.98665 0.95591 1.21262 1.01862 0.99430 0.98627 1.18064 0.91507 0.89790 0.92215 1.19955 0.93533 1.33128 1.05384 0.90163 1.26829 0.96158 0.92029 1.03113 1.69875 1.03395 1.35201 1.35848 0.85115 0.78960 0.78863 0.76539 1.18022 1.18939 1.18895 1.21182 1.00746 1.04908 0.99406 1.20714 0.98265 0.94293 0.94988 0.89890 0.88471 0.92651 0.90942 0.89763 0.88569 0.88067 0.90165 0.87500 0.89360 0.91415 0.90813 0.91639 0.87726 0.87759 0.89861 0.87773 0.86308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.60 9.46 71.98 0.68 -2.92 16 2 C 0.10 2.56 3.24 29.85 0.10 2.65 16 3 H 0.13 2.37 7.79 -2.38 -0.02 2.35 16 4 O -0.38 -10.39 9.51 -126.36 -1.20 -11.59 16 5 C 0.04 0.77 5.28 71.98 0.38 1.15 16 6 C 0.07 1.32 3.81 31.06 0.12 1.44 16 7 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 8 C -0.14 -1.27 6.54 31.85 0.21 -1.06 16 9 C -0.15 -1.23 7.16 32.05 0.23 -1.00 16 10 C 0.03 0.47 7.78 72.65 0.56 1.04 16 11 O -0.40 -9.06 11.00 -146.52 -1.61 -10.67 16 12 C 0.45 15.44 7.33 71.24 0.52 15.96 16 13 O -0.53 -21.43 16.25 28.41 0.46 -20.97 16 14 O -0.35 -12.89 10.11 -51.37 -0.52 -13.41 16 15 C 0.14 5.33 5.58 71.24 0.40 5.72 16 16 C -0.23 -10.06 5.54 -19.67 -0.11 -10.17 16 17 C -0.08 -3.79 9.67 22.22 0.21 -3.58 16 18 C -0.19 -10.15 8.70 22.73 0.20 -9.95 16 19 C 0.09 4.66 5.57 -21.29 -0.12 4.54 16 20 C -0.49 -26.06 9.05 23.46 0.21 -25.85 16 21 H 0.08 4.08 7.91 -2.91 -0.02 4.06 16 22 C 0.03 1.71 5.15 85.26 0.44 2.15 16 23 N -0.82 -42.07 10.95 21.83 0.24 -41.84 16 24 Si 0.98 37.23 29.59 68.60 2.03 39.26 16 25 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 26 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 27 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 28 C -0.24 -11.81 9.80 22.73 0.22 -11.59 16 29 C -0.06 -2.82 9.67 22.22 0.21 -2.61 16 30 H 0.08 1.89 8.11 -2.39 -0.02 1.87 16 31 H 0.10 1.60 7.87 -2.39 -0.02 1.58 16 32 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.07 1.05 7.87 -2.39 -0.02 1.03 16 34 H 0.08 1.09 8.08 -2.39 -0.02 1.07 16 35 H 0.10 0.59 7.85 -2.38 -0.02 0.57 16 36 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.07 2.62 8.07 -2.39 -0.02 2.60 16 42 H 0.07 2.44 8.07 -2.38 -0.02 2.42 16 43 H 0.10 4.48 8.06 -2.91 -0.02 4.46 16 44 H 0.10 5.72 6.16 -2.91 -0.02 5.70 16 45 H 0.29 13.39 8.30 -92.72 -0.77 12.62 16 46 H 0.10 4.72 8.06 -2.91 -0.02 4.70 16 47 H 0.12 4.43 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -68.93 395.30 4.82 -64.11 By element: Atomic # 1 Polarization: 28.23 SS G_CDS: 0.95 Total: 29.18 kcal Atomic # 6 Polarization: -38.55 SS G_CDS: 4.47 Total: -34.07 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: 0.24 Total: -41.84 kcal Atomic # 8 Polarization: -53.77 SS G_CDS: -2.87 Total: -56.64 kcal Atomic # 14 Polarization: 37.23 SS G_CDS: 2.03 Total: 39.26 kcal Total: -68.93 4.82 -64.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271909200.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.904 kcal (2) G-P(sol) polarization free energy of solvation -68.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 17.68 seconds