Wall clock time and date at job start Tue Mar 31 2020 19:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47419 * 2 1 4 4 O 1.42906 * 109.46889 * 120.00246 * 2 1 3 5 5 C 1.42901 * 113.99947 * 269.99795 * 4 2 1 6 6 C 1.53000 * 109.47132 * 179.97438 * 5 4 2 7 7 H 1.08997 * 109.82624 * 305.57113 * 6 5 4 8 8 C 1.54378 * 109.82926 * 184.58595 * 6 5 4 9 9 C 1.55305 * 102.25036 * 219.12976 * 8 6 5 10 10 C 1.54942 * 100.94395 * 34.13785 * 9 8 6 11 11 O 1.43239 * 109.82594 * 66.45272 * 6 5 4 12 12 C 1.50694 * 109.46989 * 239.99602 * 2 1 3 13 13 O 1.20831 * 120.00625 * 245.00044 * 12 2 1 14 14 O 1.34238 * 119.99826 * 65.00898 * 12 2 1 15 15 C 1.45201 * 116.99822 * 180.02562 * 14 12 2 16 16 C 1.50708 * 109.46868 * 179.97438 * 15 14 12 17 17 C 1.38629 * 119.75158 * 89.99569 * 16 15 14 18 18 C 1.37616 * 120.24685 * 179.97438 * 17 16 15 19 19 C 1.40714 * 119.74604 * 0.02562 * 18 17 16 20 20 C 1.41395 * 120.24112 * 179.97438 * 19 18 17 21 21 H 1.08007 * 119.99568 * 155.58334 * 20 19 18 22 22 C 1.39946 * 120.00621 * 335.31228 * 20 19 18 23 23 N 1.30823 * 119.99390 * 342.55986 * 22 20 19 24 24 Si 1.86793 * 120.00145 * 162.56213 * 22 20 19 25 25 H 1.48504 * 109.47123 * 90.00063 * 24 22 20 26 26 H 1.48504 * 109.46771 * 209.99514 * 24 22 20 27 27 H 1.48495 * 109.47393 * 329.99926 * 24 22 20 28 28 C 1.40707 * 119.51119 * 0.26996 * 19 18 17 29 29 C 1.37627 * 119.74628 * 359.42829 * 28 19 18 30 30 H 1.09000 * 109.47419 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47122 * 300.00205 * 1 2 3 32 32 H 1.09001 * 109.46828 * 59.99339 * 1 2 3 33 33 H 1.09001 * 109.46996 * 299.99886 * 5 4 2 34 34 H 1.09005 * 109.46866 * 59.99835 * 5 4 2 35 35 H 1.09003 * 110.85052 * 337.32292 * 8 6 5 36 36 H 1.08997 * 110.84572 * 100.93993 * 8 6 5 37 37 H 1.08996 * 111.12791 * 276.21193 * 9 8 6 38 38 H 1.09006 * 111.12032 * 152.05024 * 9 8 6 39 39 H 1.09002 * 110.30958 * 204.63817 * 10 9 8 40 40 H 1.09004 * 110.39675 * 82.51005 * 10 9 8 41 41 H 1.08994 * 109.47852 * 59.99377 * 15 14 12 42 42 H 1.08998 * 109.46768 * 299.99255 * 15 14 12 43 43 H 1.07999 * 119.87506 * 0.02562 * 17 16 15 44 44 H 1.08001 * 120.12717 * 180.02562 * 18 17 16 45 45 H 0.97002 * 119.99788 * 179.97438 * 23 22 20 46 46 H 1.08000 * 120.12688 * 179.69910 * 28 19 18 47 47 H 1.07993 * 119.87846 * 180.27171 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2001 0.1828 2.2941 6 6 2.7078 -0.6410 3.4793 7 1 2.0282 -1.4714 3.6704 8 6 2.8104 0.2536 4.7332 9 6 4.1217 -0.2532 5.3932 10 6 4.9620 -0.6107 4.1414 11 8 4.0196 -1.1419 3.1963 12 6 2.0323 -0.7105 -1.2304 13 8 2.6506 -1.7429 -1.1219 14 8 1.7929 -0.1963 -2.4470 15 6 2.3060 -0.9345 -3.5873 16 6 1.9428 -0.2113 -4.8586 17 6 2.8055 0.7410 -5.3788 18 6 2.4843 1.4072 -6.5394 19 6 1.2746 1.1189 -7.1979 20 6 0.9338 1.7974 -8.3907 21 1 0.2537 1.3421 -9.0955 22 6 1.4733 3.0613 -8.6554 23 7 2.0037 3.7621 -7.6864 24 14 1.4359 3.7476 -10.3923 25 1 0.1807 4.5151 -10.5944 26 1 2.6023 4.6440 -10.5955 27 1 1.4950 2.6295 -11.3678 28 6 0.4038 0.1549 -6.6573 29 6 0.7484 -0.5035 -5.4989 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 2.9320 0.9512 2.0451 34 1 1.2537 0.6546 2.5589 35 1 2.8972 1.3039 4.4545 36 1 1.9576 0.0956 5.3933 37 1 3.9372 -1.1346 6.0074 38 1 4.5992 0.5356 5.9746 39 1 5.7118 -1.3615 4.3908 40 1 5.4406 0.2816 3.7377 41 1 1.8692 -1.9330 -3.6002 42 1 3.3904 -1.0133 -3.5108 43 1 3.7335 0.9604 -4.8719 44 1 3.1580 2.1484 -6.9432 45 1 2.3779 4.6379 -7.8699 46 1 -0.5294 -0.0707 -7.1519 47 1 0.0837 -1.2469 -5.0845 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271909202.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:48 Heat of formation + Delta-G solvation = -167.011842 kcal Electronic energy + Delta-G solvation = -27644.162476 eV Core-core repulsion = 23563.599725 eV Total energy + Delta-G solvation = -4080.562751 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 3.67 seconds Orbital eigenvalues (eV) -40.28208 -39.79410 -38.05035 -37.48905 -35.85018 -33.87123 -32.62662 -32.20999 -30.79515 -30.23863 -29.36375 -27.25397 -25.98569 -24.70182 -23.45843 -22.14057 -21.52467 -21.08298 -20.58628 -20.02249 -17.62485 -17.39213 -17.32061 -17.01411 -16.39016 -16.17507 -15.84959 -15.36211 -15.17199 -14.78983 -14.33222 -13.99230 -13.88204 -13.74760 -13.50575 -13.05141 -12.87626 -12.61387 -12.37391 -12.28425 -12.13115 -12.05227 -12.01873 -11.74777 -11.71519 -11.59056 -11.37805 -11.23728 -11.16181 -10.99149 -10.82490 -10.44431 -10.20901 -10.11690 -9.83384 -9.75808 -9.62966 -9.46533 -9.21549 -7.55918 -7.44521 -6.86520 -4.46410 2.31807 2.49332 2.81371 3.00722 3.02558 3.05944 3.15214 3.48874 3.79387 3.85806 4.04451 4.40255 4.49212 4.52715 4.70684 4.75099 4.84395 4.88813 4.95631 5.05389 5.09927 5.19509 5.24691 5.34484 5.42453 5.52358 5.55021 5.58255 5.62992 5.70070 5.73942 5.76006 6.00027 6.10145 6.26338 6.32279 6.71317 6.86537 6.90170 6.92177 6.97570 7.18741 7.26904 7.52035 7.74459 7.95887 8.01648 8.15421 8.19465 8.54061 8.78628 8.86971 10.07171 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023684 B = 0.001833 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.928385 B =15268.350190 C =15593.511819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.096 3.904 3 H 0.096 0.904 4 O -0.351 6.351 5 C 0.050 3.950 6 C 0.084 3.916 7 H 0.090 0.910 8 C -0.149 4.149 9 C -0.156 4.156 10 C 0.045 3.955 11 O -0.364 6.364 12 C 0.454 3.546 13 O -0.497 6.497 14 O -0.348 6.348 15 C 0.137 3.863 16 C -0.235 4.235 17 C -0.075 4.075 18 C -0.170 4.170 19 C 0.118 3.882 20 C -0.456 4.456 21 H 0.080 0.920 22 C 0.075 3.925 23 N -0.786 5.786 24 Si 0.910 3.090 25 H -0.269 1.269 26 H -0.275 1.275 27 H -0.260 1.260 28 C -0.229 4.229 29 C -0.064 4.064 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.089 0.911 44 H 0.120 0.880 45 H 0.282 0.718 46 H 0.095 0.905 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.923 -1.663 21.946 22.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.037 3.963 3 H 0.114 0.886 4 O -0.269 6.269 5 C -0.027 4.027 6 C 0.026 3.974 7 H 0.108 0.892 8 C -0.186 4.186 9 C -0.193 4.193 10 C -0.032 4.032 11 O -0.283 6.283 12 C 0.295 3.705 13 O -0.384 6.384 14 O -0.265 6.265 15 C 0.065 3.935 16 C -0.236 4.236 17 C -0.094 4.094 18 C -0.189 4.189 19 C 0.115 3.885 20 C -0.485 4.485 21 H 0.098 0.902 22 C -0.144 4.144 23 N -0.410 5.410 24 Si 0.734 3.266 25 H -0.194 1.194 26 H -0.200 1.200 27 H -0.183 1.183 28 C -0.249 4.249 29 C -0.082 4.082 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.107 0.893 44 H 0.138 0.862 45 H 0.093 0.907 46 H 0.113 0.887 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.313 -2.087 21.809 21.948 hybrid contribution -0.031 0.837 -0.548 1.001 sum 1.282 -1.250 21.261 21.336 Atomic orbital electron populations 1.22209 0.92611 1.03911 1.03836 1.21419 0.95454 0.96017 0.83444 0.88631 1.88069 1.86584 1.33704 1.18569 1.23088 0.99689 0.93186 0.86753 1.22750 0.86220 0.96414 0.92043 0.89214 1.23119 0.99094 1.00314 0.96116 1.23273 0.95602 1.02131 0.98319 1.23437 0.92689 0.99088 0.87989 1.88621 1.16405 1.69613 1.53643 1.23256 0.77518 0.84148 0.85529 1.90653 1.37019 1.23328 1.87376 1.86692 1.72065 1.53500 1.14290 1.21750 0.97662 0.93444 0.80658 1.18689 1.00131 1.07548 0.97219 1.20545 0.97398 0.95093 0.96376 1.21294 0.97953 1.02513 0.97186 1.17688 0.89911 0.89472 0.91423 1.19665 1.24166 1.00680 1.03974 0.90188 1.25971 0.92839 0.96778 0.98823 1.69828 1.27801 1.10499 1.32902 0.86285 0.78711 0.79312 0.82315 1.19392 1.19993 1.18340 1.20968 1.00120 1.04893 0.98918 1.20402 0.94447 0.97853 0.95517 0.91176 0.91186 0.89615 0.92531 0.91874 0.90097 0.89466 0.90163 0.89736 0.89613 0.92201 0.92024 0.91992 0.89308 0.86231 0.90652 0.88707 0.89254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.86 9.50 37.16 0.35 -1.50 16 2 C 0.10 1.30 3.24 -27.89 -0.09 1.21 16 3 H 0.10 1.09 7.79 -51.93 -0.40 0.69 16 4 O -0.35 -4.99 9.51 -58.85 -0.56 -5.55 16 5 C 0.05 0.50 5.28 37.16 0.20 0.69 16 6 C 0.08 0.79 3.81 -26.01 -0.10 0.69 16 7 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 8 C -0.15 -0.87 6.54 -24.79 -0.16 -1.03 16 9 C -0.16 -0.87 7.16 -24.48 -0.18 -1.05 16 10 C 0.04 0.36 7.78 38.18 0.30 0.66 16 11 O -0.36 -4.48 11.00 -37.80 -0.42 -4.90 16 12 C 0.45 8.08 7.29 36.00 0.26 8.34 16 13 O -0.50 -10.32 16.26 -25.47 -0.41 -10.73 16 14 O -0.35 -6.66 10.20 -39.28 -0.40 -7.06 16 15 C 0.14 2.70 5.58 36.01 0.20 2.90 16 16 C -0.23 -5.25 5.54 -104.33 -0.58 -5.82 16 17 C -0.08 -1.77 9.67 -39.66 -0.38 -2.16 16 18 C -0.17 -4.37 8.70 -38.87 -0.34 -4.71 16 19 C 0.12 3.09 5.57 -106.83 -0.60 2.50 16 20 C -0.46 -11.81 9.05 -37.74 -0.34 -12.15 16 21 H 0.08 1.98 7.91 -52.48 -0.41 1.56 16 22 C 0.07 1.83 5.15 -17.34 -0.09 1.74 16 23 N -0.79 -19.82 10.95 55.55 0.61 -19.21 16 24 Si 0.91 18.11 29.59 -169.99 -5.03 13.08 16 25 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 26 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 27 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 28 C -0.23 -5.57 9.80 -38.87 -0.38 -5.95 16 29 C -0.06 -1.44 9.67 -39.66 -0.38 -1.82 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.58 7.87 -51.92 -0.41 0.18 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 34 H 0.06 0.46 7.87 -51.93 -0.41 0.05 16 35 H 0.08 0.41 7.85 -51.93 -0.41 0.00 16 36 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 1.16 8.07 -51.93 -0.42 0.74 16 42 H 0.06 1.19 8.07 -51.93 -0.42 0.77 16 43 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 44 H 0.12 3.15 6.16 -52.49 -0.32 2.82 16 45 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 46 H 0.09 2.15 8.06 -52.49 -0.42 1.72 16 47 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 395.43 15.07 5.96 5.96 Total: -1.00 -31.41 395.43 -9.97 -41.38 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -7.41 Total: 4.49 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: -2.31 Total: -17.47 kcal Atomic # 7 Polarization: -19.82 SS G_CDS: 0.61 Total: -19.21 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -1.79 Total: -28.23 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.08 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.41 -9.97 -41.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271909202.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.633 kcal (2) G-P(sol) polarization free energy of solvation -31.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.68 seconds