Wall clock time and date at job start Tue Mar 31 2020 19:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47419 * 2 1 4 4 O 1.42906 * 109.46889 * 120.00246 * 2 1 3 5 5 C 1.42901 * 113.99947 * 269.99795 * 4 2 1 6 6 C 1.53000 * 109.47132 * 179.97438 * 5 4 2 7 7 H 1.08997 * 109.82624 * 305.57113 * 6 5 4 8 8 C 1.54378 * 109.82926 * 184.58595 * 6 5 4 9 9 C 1.55305 * 102.25036 * 219.12976 * 8 6 5 10 10 C 1.54942 * 100.94395 * 34.13785 * 9 8 6 11 11 O 1.43239 * 109.82594 * 66.45272 * 6 5 4 12 12 C 1.50694 * 109.46989 * 239.99602 * 2 1 3 13 13 O 1.20831 * 120.00625 * 245.00044 * 12 2 1 14 14 O 1.34238 * 119.99826 * 65.00898 * 12 2 1 15 15 C 1.45201 * 116.99822 * 180.02562 * 14 12 2 16 16 C 1.50708 * 109.46868 * 179.97438 * 15 14 12 17 17 C 1.38629 * 119.75158 * 89.99569 * 16 15 14 18 18 C 1.37616 * 120.24685 * 179.97438 * 17 16 15 19 19 C 1.40714 * 119.74604 * 0.02562 * 18 17 16 20 20 C 1.41395 * 120.24112 * 179.97438 * 19 18 17 21 21 H 1.08007 * 119.99568 * 155.58334 * 20 19 18 22 22 C 1.39946 * 120.00621 * 335.31228 * 20 19 18 23 23 N 1.30823 * 119.99390 * 342.55986 * 22 20 19 24 24 Si 1.86793 * 120.00145 * 162.56213 * 22 20 19 25 25 H 1.48504 * 109.47123 * 90.00063 * 24 22 20 26 26 H 1.48504 * 109.46771 * 209.99514 * 24 22 20 27 27 H 1.48495 * 109.47393 * 329.99926 * 24 22 20 28 28 C 1.40707 * 119.51119 * 0.26996 * 19 18 17 29 29 C 1.37627 * 119.74628 * 359.42829 * 28 19 18 30 30 H 1.09000 * 109.47419 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47122 * 300.00205 * 1 2 3 32 32 H 1.09001 * 109.46828 * 59.99339 * 1 2 3 33 33 H 1.09001 * 109.46996 * 299.99886 * 5 4 2 34 34 H 1.09005 * 109.46866 * 59.99835 * 5 4 2 35 35 H 1.09003 * 110.85052 * 337.32292 * 8 6 5 36 36 H 1.08997 * 110.84572 * 100.93993 * 8 6 5 37 37 H 1.08996 * 111.12791 * 276.21193 * 9 8 6 38 38 H 1.09006 * 111.12032 * 152.05024 * 9 8 6 39 39 H 1.09002 * 110.30958 * 204.63817 * 10 9 8 40 40 H 1.09004 * 110.39675 * 82.51005 * 10 9 8 41 41 H 1.08994 * 109.47852 * 59.99377 * 15 14 12 42 42 H 1.08998 * 109.46768 * 299.99255 * 15 14 12 43 43 H 1.07999 * 119.87506 * 0.02562 * 17 16 15 44 44 H 1.08001 * 120.12717 * 180.02562 * 18 17 16 45 45 H 0.97002 * 119.99788 * 179.97438 * 23 22 20 46 46 H 1.08000 * 120.12688 * 179.69910 * 28 19 18 47 47 H 1.07993 * 119.87846 * 180.27171 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2001 0.1828 2.2941 6 6 2.7078 -0.6410 3.4793 7 1 2.0282 -1.4714 3.6704 8 6 2.8104 0.2536 4.7332 9 6 4.1217 -0.2532 5.3932 10 6 4.9620 -0.6107 4.1414 11 8 4.0196 -1.1419 3.1963 12 6 2.0323 -0.7105 -1.2304 13 8 2.6506 -1.7429 -1.1219 14 8 1.7929 -0.1963 -2.4470 15 6 2.3060 -0.9345 -3.5873 16 6 1.9428 -0.2113 -4.8586 17 6 2.8055 0.7410 -5.3788 18 6 2.4843 1.4072 -6.5394 19 6 1.2746 1.1189 -7.1979 20 6 0.9338 1.7974 -8.3907 21 1 0.2537 1.3421 -9.0955 22 6 1.4733 3.0613 -8.6554 23 7 2.0037 3.7621 -7.6864 24 14 1.4359 3.7476 -10.3923 25 1 0.1807 4.5151 -10.5944 26 1 2.6023 4.6440 -10.5955 27 1 1.4950 2.6295 -11.3678 28 6 0.4038 0.1549 -6.6573 29 6 0.7484 -0.5035 -5.4989 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 2.9320 0.9512 2.0451 34 1 1.2537 0.6546 2.5589 35 1 2.8972 1.3039 4.4545 36 1 1.9576 0.0956 5.3933 37 1 3.9372 -1.1346 6.0074 38 1 4.5992 0.5356 5.9746 39 1 5.7118 -1.3615 4.3908 40 1 5.4406 0.2816 3.7377 41 1 1.8692 -1.9330 -3.6002 42 1 3.3904 -1.0133 -3.5108 43 1 3.7335 0.9604 -4.8719 44 1 3.1580 2.1484 -6.9432 45 1 2.3779 4.6379 -7.8699 46 1 -0.5294 -0.0707 -7.1519 47 1 0.0837 -1.2469 -5.0845 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271909202.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:47 Heat of formation + Delta-G solvation = -183.205833 kcal Electronic energy + Delta-G solvation = -27644.864701 eV Core-core repulsion = 23563.599725 eV Total energy + Delta-G solvation = -4081.264975 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.64603 -40.55751 -39.56996 -38.82182 -37.38612 -35.69858 -33.41611 -33.04443 -32.43749 -31.24756 -31.04796 -28.98798 -26.75602 -26.05273 -24.92035 -22.96428 -22.68959 -22.23721 -21.96433 -21.70399 -19.27786 -18.85204 -18.20884 -18.02097 -17.68124 -17.31626 -16.98082 -16.89544 -16.15170 -16.04188 -15.70549 -15.51576 -15.28282 -14.74622 -14.41904 -14.35512 -14.03211 -13.92478 -13.85068 -13.64186 -13.54906 -13.30735 -13.02699 -12.85466 -12.70738 -12.66681 -12.62963 -12.49981 -12.22076 -12.11525 -12.08611 -11.73540 -11.70761 -11.60020 -11.37872 -11.30278 -11.04594 -10.76371 -10.49743 -9.44988 -9.34158 -8.69160 -6.40341 0.67897 1.09151 1.10637 1.35570 1.40071 1.53167 1.65410 2.19396 2.60447 2.77932 2.97344 3.53402 3.57458 3.75478 3.81036 3.84048 3.94497 3.99053 4.06728 4.08604 4.15915 4.22744 4.36768 4.43308 4.45620 4.47992 4.53722 4.61207 4.69288 4.75386 4.79930 4.89641 4.93884 4.99824 5.03528 5.11324 5.15707 5.25446 5.29069 5.37895 5.43218 5.64208 5.86922 5.92332 6.04772 6.13308 6.17114 6.30750 6.63325 6.72136 6.87669 6.96097 8.27449 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023684 B = 0.001833 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.928385 B =15268.350190 C =15593.511819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 H 0.119 0.881 4 O -0.381 6.381 5 C 0.043 3.957 6 C 0.074 3.926 7 H 0.082 0.918 8 C -0.139 4.139 9 C -0.148 4.148 10 C 0.033 3.967 11 O -0.407 6.407 12 C 0.452 3.548 13 O -0.532 6.532 14 O -0.354 6.354 15 C 0.140 3.860 16 C -0.230 4.230 17 C -0.080 4.080 18 C -0.193 4.193 19 C 0.087 3.913 20 C -0.492 4.492 21 H 0.081 0.919 22 C 0.035 3.965 23 N -0.818 5.818 24 Si 0.985 3.015 25 H -0.260 1.260 26 H -0.266 1.266 27 H -0.258 1.258 28 C -0.243 4.243 29 C -0.064 4.064 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.058 0.942 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.083 0.917 38 H 0.105 0.895 39 H 0.087 0.913 40 H 0.061 0.939 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.105 0.895 44 H 0.105 0.895 45 H 0.291 0.709 46 H 0.104 0.896 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.124 -0.713 23.601 23.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.041 3.959 3 H 0.137 0.863 4 O -0.300 6.300 5 C -0.033 4.033 6 C 0.016 3.984 7 H 0.100 0.900 8 C -0.177 4.177 9 C -0.185 4.185 10 C -0.043 4.043 11 O -0.327 6.327 12 C 0.295 3.705 13 O -0.421 6.421 14 O -0.271 6.271 15 C 0.068 3.932 16 C -0.231 4.231 17 C -0.099 4.099 18 C -0.212 4.212 19 C 0.084 3.916 20 C -0.520 4.520 21 H 0.099 0.901 22 C -0.182 4.182 23 N -0.443 5.443 24 Si 0.805 3.195 25 H -0.185 1.185 26 H -0.190 1.190 27 H -0.182 1.182 28 C -0.262 4.262 29 C -0.082 4.082 30 H 0.080 0.920 31 H 0.122 0.878 32 H 0.101 0.899 33 H 0.076 0.924 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.126 0.874 37 H 0.102 0.898 38 H 0.124 0.876 39 H 0.106 0.894 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.123 0.877 44 H 0.123 0.877 45 H 0.102 0.898 46 H 0.122 0.878 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.507 -1.134 23.494 23.527 hybrid contribution 0.263 0.452 -0.900 1.041 sum 0.770 -0.682 22.593 22.617 Atomic orbital electron populations 1.22200 0.90446 1.03856 1.05367 1.21569 0.96844 0.96046 0.81451 0.86342 1.88043 1.86893 1.35560 1.19529 1.23394 1.01454 0.92928 0.85520 1.22961 0.85030 0.96963 0.93430 0.89991 1.23130 0.99893 1.00112 0.94548 1.23267 0.95068 1.02978 0.97236 1.23640 0.92702 0.99170 0.88769 1.88572 1.18109 1.70728 1.55332 1.24241 0.76428 0.83829 0.85965 1.90635 1.38759 1.25090 1.87655 1.86661 1.72122 1.53480 1.14822 1.21592 0.98013 0.93462 0.80120 1.18951 0.99574 1.06541 0.98074 1.20764 0.98298 0.95017 0.95807 1.21264 0.98118 1.03379 0.98460 1.18055 0.90628 0.90601 0.92267 1.19927 1.25684 1.01879 1.04530 0.90129 1.26834 0.91887 0.96517 1.02912 1.69873 1.28288 1.11136 1.34972 0.85164 0.79153 0.78523 0.76672 1.18495 1.19025 1.18214 1.21179 1.00397 1.04974 0.99688 1.20709 0.94867 0.97894 0.94772 0.92033 0.87811 0.89879 0.92371 0.88571 0.88894 0.87442 0.89819 0.87621 0.89443 0.92028 0.90980 0.91659 0.87721 0.87702 0.89845 0.87757 0.86390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.18 9.50 71.98 0.68 -2.49 16 2 C 0.10 2.53 3.24 29.85 0.10 2.63 16 3 H 0.12 2.43 7.79 -2.39 -0.02 2.41 16 4 O -0.38 -10.40 9.51 -126.40 -1.20 -11.60 16 5 C 0.04 0.77 5.28 71.98 0.38 1.15 16 6 C 0.07 1.30 3.81 31.06 0.12 1.42 16 7 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 8 C -0.14 -1.24 6.54 31.85 0.21 -1.03 16 9 C -0.15 -1.33 7.16 32.05 0.23 -1.10 16 10 C 0.03 0.52 7.78 72.65 0.56 1.08 16 11 O -0.41 -10.03 11.00 -146.52 -1.61 -11.64 16 12 C 0.45 15.75 7.29 71.23 0.52 16.27 16 13 O -0.53 -22.14 16.26 28.37 0.46 -21.68 16 14 O -0.35 -13.17 10.20 -51.50 -0.53 -13.70 16 15 C 0.14 5.43 5.58 71.24 0.40 5.83 16 16 C -0.23 -10.17 5.54 -19.67 -0.11 -10.28 16 17 C -0.08 -3.81 9.67 22.22 0.21 -3.60 16 18 C -0.19 -10.20 8.70 22.73 0.20 -10.00 16 19 C 0.09 4.69 5.57 -21.29 -0.12 4.57 16 20 C -0.49 -26.11 9.05 23.46 0.21 -25.90 16 21 H 0.08 4.09 7.91 -2.91 -0.02 4.07 16 22 C 0.03 1.71 5.15 85.26 0.44 2.15 16 23 N -0.82 -42.02 10.95 21.83 0.24 -41.79 16 24 Si 0.98 37.19 29.59 68.60 2.03 39.22 16 25 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 26 H -0.27 -9.55 7.11 99.48 0.71 -8.84 16 27 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 28 C -0.24 -11.89 9.80 22.73 0.22 -11.66 16 29 C -0.06 -2.85 9.67 22.22 0.21 -2.63 16 30 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.10 1.34 7.87 -2.38 -0.02 1.32 16 32 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.06 1.01 8.09 -2.39 -0.02 0.99 16 34 H 0.10 1.05 7.87 -2.38 -0.02 1.03 16 35 H 0.09 0.62 7.85 -2.39 -0.02 0.60 16 36 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.11 0.52 8.14 -2.38 -0.02 0.50 16 39 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.07 2.63 8.07 -2.39 -0.02 2.62 16 42 H 0.07 2.47 8.07 -2.39 -0.02 2.45 16 43 H 0.10 4.50 8.06 -2.91 -0.02 4.48 16 44 H 0.11 5.76 6.16 -2.91 -0.02 5.74 16 45 H 0.29 13.41 8.30 -92.71 -0.77 12.64 16 46 H 0.10 4.76 8.06 -2.91 -0.02 4.73 16 47 H 0.12 4.48 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -70.27 395.43 4.81 -65.46 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: 0.95 Total: 29.33 kcal Atomic # 6 Polarization: -38.08 SS G_CDS: 4.47 Total: -33.61 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: 0.24 Total: -41.79 kcal Atomic # 8 Polarization: -55.74 SS G_CDS: -2.88 Total: -58.62 kcal Atomic # 14 Polarization: 37.19 SS G_CDS: 2.03 Total: 39.22 kcal Total: -70.27 4.81 -65.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271909202.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.747 kcal (2) G-P(sol) polarization free energy of solvation -70.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds