Wall clock time and date at job start Tue Mar 31 2020 19:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46576 * 2 1 4 4 O 1.42894 * 109.47206 * 119.99699 * 2 1 3 5 5 C 1.42904 * 114.00238 * 270.00192 * 4 2 1 6 6 C 1.52994 * 109.47393 * 179.97438 * 5 4 2 7 7 H 1.08999 * 110.27388 * 54.29710 * 6 5 4 8 8 C 1.54943 * 110.31203 * 176.39242 * 6 5 4 9 9 C 1.55413 * 100.89498 * 155.28846 * 8 6 5 10 10 C 1.54374 * 102.30844 * 325.98956 * 9 8 6 11 11 O 1.43238 * 107.59116 * 21.28646 * 10 9 8 12 12 C 1.50697 * 109.47241 * 239.99923 * 2 1 3 13 13 O 1.20830 * 119.99993 * 244.99720 * 12 2 1 14 14 O 1.34231 * 120.00002 * 65.00162 * 12 2 1 15 15 C 1.45206 * 116.99614 * 180.02562 * 14 12 2 16 16 C 1.50708 * 109.46536 * 179.97438 * 15 14 12 17 17 C 1.38638 * 119.74865 * 90.00087 * 16 15 14 18 18 C 1.37614 * 120.24795 * 179.97438 * 17 16 15 19 19 C 1.40718 * 119.74637 * 359.97438 * 18 17 16 20 20 C 1.41389 * 120.24578 * 180.02562 * 19 18 17 21 21 H 1.08000 * 119.99865 * 205.11505 * 20 19 18 22 22 C 1.39948 * 119.99853 * 25.12217 * 20 19 18 23 23 N 1.30818 * 120.00279 * 27.12006 * 22 20 19 24 24 Si 1.86805 * 119.99677 * 206.84691 * 22 20 19 25 25 H 1.48505 * 109.47193 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47104 * 119.99803 * 24 22 20 27 27 H 1.48500 * 109.47047 * 239.99547 * 24 22 20 28 28 C 1.40718 * 119.50806 * 0.27463 * 19 18 17 29 29 C 1.37615 * 119.74548 * 359.47080 * 28 19 18 30 30 H 1.09000 * 109.47311 * 60.00619 * 1 2 3 31 31 H 1.09000 * 109.46779 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47699 * 300.00144 * 1 2 3 33 33 H 1.08998 * 109.47253 * 300.00450 * 5 4 2 34 34 H 1.09002 * 109.46619 * 59.99913 * 5 4 2 35 35 H 1.09003 * 111.12545 * 273.28453 * 8 6 5 36 36 H 1.09001 * 111.12473 * 37.44230 * 8 6 5 37 37 H 1.08997 * 110.88118 * 207.75072 * 9 8 6 38 38 H 1.09000 * 110.93165 * 84.25053 * 9 8 6 39 39 H 1.08998 * 109.83054 * 261.76835 * 10 9 8 40 40 H 1.09002 * 109.90483 * 140.84137 * 10 9 8 41 41 H 1.08998 * 109.47322 * 59.99694 * 15 14 12 42 42 H 1.09000 * 109.47135 * 299.99296 * 15 14 12 43 43 H 1.08003 * 119.87511 * 359.97147 * 17 16 15 44 44 H 1.07998 * 120.12483 * 179.97438 * 18 17 16 45 45 H 0.97001 * 120.00056 * 3.90147 * 23 22 20 46 46 H 1.08004 * 120.12740 * 179.70770 * 28 19 18 47 47 H 1.08001 * 119.87702 * 180.23074 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.2001 0.1831 2.2941 6 6 2.7079 -0.6406 3.4792 7 1 3.6004 -1.1987 3.1964 8 6 3.0109 0.2832 4.6857 9 6 2.8593 -0.7162 5.8662 10 6 1.7355 -1.6487 5.3656 11 8 1.6839 -1.5371 3.9386 12 6 2.0323 -0.7104 -1.2304 13 8 2.6507 -1.7428 -1.1218 14 8 1.7929 -0.1963 -2.4470 15 6 2.3061 -0.9345 -3.5872 16 6 1.9428 -0.2113 -4.8586 17 6 2.8055 0.7411 -5.3788 18 6 2.4843 1.4072 -6.5394 19 6 1.2751 1.1181 -7.1985 20 6 0.9347 1.7958 -8.3918 21 1 -0.1016 1.8980 -8.6780 22 6 1.9408 2.3340 -9.2022 23 7 3.1379 1.8065 -9.1960 24 14 1.5722 3.8011 -10.2983 25 1 0.1527 4.2024 -10.1274 26 1 2.4560 4.9339 -9.9230 27 1 1.8148 3.4328 -11.7163 28 6 0.4047 0.1533 -6.6584 29 6 0.7490 -0.5042 -5.4995 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 2.9318 0.9515 2.0450 34 1 1.2537 0.6547 2.5588 35 1 4.0250 0.6794 4.6321 36 1 2.2798 1.0884 4.7573 37 1 2.5574 -0.1989 6.7768 38 1 3.7828 -1.2727 6.0262 39 1 0.7818 -1.3422 5.7953 40 1 1.9543 -2.6785 5.6483 41 1 1.8693 -1.9331 -3.6001 42 1 3.3906 -1.0132 -3.5109 43 1 3.7332 0.9610 -4.8714 44 1 3.1576 2.1491 -6.9427 45 1 3.3135 1.0084 -8.6735 46 1 -0.5281 -0.0730 -7.1534 47 1 0.0843 -1.2478 -5.0851 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271909205.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:11 Heat of formation + Delta-G solvation = -174.017225 kcal Electronic energy + Delta-G solvation = -27536.732025 eV Core-core repulsion = 23455.865497 eV Total energy + Delta-G solvation = -4080.866527 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.35158 -39.81421 -38.17786 -37.67887 -35.97520 -34.11726 -32.68281 -32.26804 -30.75091 -30.27188 -29.50757 -27.09047 -25.98725 -24.71172 -23.49492 -22.10423 -21.66591 -21.22390 -20.68887 -20.19472 -18.02378 -17.74878 -17.43487 -16.98925 -16.37619 -16.11893 -15.93567 -15.40591 -14.95395 -14.75820 -14.35504 -14.32096 -13.93888 -13.84558 -13.66259 -13.22451 -12.74614 -12.65148 -12.48952 -12.37484 -12.21977 -12.17341 -12.02971 -11.88800 -11.75514 -11.64596 -11.44562 -11.25595 -11.20748 -11.01528 -10.61942 -10.49131 -10.25148 -10.23158 -9.83467 -9.80132 -9.68962 -9.59086 -9.05199 -7.79255 -7.67280 -7.31911 -4.56463 2.22877 2.40263 2.80352 2.81129 3.10075 3.19818 3.29240 3.40683 3.68779 3.92860 4.00901 4.38686 4.42587 4.48704 4.65279 4.71999 4.77191 4.82163 4.93406 4.99016 5.04949 5.10890 5.22818 5.32450 5.40630 5.42697 5.47448 5.54277 5.55862 5.60811 5.63859 5.69847 5.97331 6.02545 6.12163 6.16107 6.66008 6.68284 6.80132 6.84401 6.91717 7.03479 7.28737 7.54956 7.65926 7.71090 7.84116 8.05772 8.08021 8.20356 8.64256 8.76386 9.91741 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.030354 B = 0.001723 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.213681 B =16244.376931 C =16438.851598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.097 3.903 3 H 0.096 0.904 4 O -0.352 6.352 5 C 0.061 3.939 6 C 0.084 3.916 7 H 0.082 0.918 8 C -0.150 4.150 9 C -0.155 4.155 10 C 0.047 3.953 11 O -0.369 6.369 12 C 0.455 3.545 13 O -0.498 6.498 14 O -0.349 6.349 15 C 0.138 3.862 16 C -0.248 4.248 17 C -0.054 4.054 18 C -0.226 4.226 19 C 0.103 3.897 20 C -0.513 4.513 21 H 0.079 0.921 22 C 0.038 3.962 23 N -0.788 5.788 24 Si 1.071 2.929 25 H -0.275 1.275 26 H -0.273 1.273 27 H -0.277 1.277 28 C -0.232 4.232 29 C -0.053 4.053 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.091 0.909 44 H 0.106 0.894 45 H 0.301 0.699 46 H 0.096 0.904 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.941 0.282 24.136 24.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.038 3.962 3 H 0.114 0.886 4 O -0.271 6.271 5 C -0.015 4.015 6 C 0.026 3.974 7 H 0.100 0.900 8 C -0.187 4.187 9 C -0.193 4.193 10 C -0.029 4.029 11 O -0.288 6.288 12 C 0.296 3.704 13 O -0.386 6.386 14 O -0.266 6.266 15 C 0.066 3.934 16 C -0.249 4.249 17 C -0.073 4.073 18 C -0.245 4.245 19 C 0.100 3.900 20 C -0.540 4.540 21 H 0.097 0.903 22 C -0.185 4.185 23 N -0.410 5.410 24 Si 0.894 3.106 25 H -0.200 1.200 26 H -0.198 1.198 27 H -0.203 1.203 28 C -0.252 4.252 29 C -0.071 4.071 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.109 0.891 44 H 0.124 0.876 45 H 0.115 0.885 46 H 0.114 0.886 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.112 0.668 22.903 22.913 hybrid contribution -0.448 -0.901 1.303 1.646 sum -0.561 -0.233 24.206 24.214 Atomic orbital electron populations 1.22190 0.92504 1.04053 1.03736 1.21416 0.95699 0.95849 0.83267 0.88609 1.88072 1.86633 1.33876 1.18484 1.22798 1.00504 0.92557 0.85667 1.22979 0.91627 0.90295 0.92472 0.90036 1.23270 1.03435 0.98405 0.93618 1.23128 0.99776 0.97463 0.98898 1.23143 0.98535 0.99551 0.81714 1.88551 1.54313 1.65882 1.20066 1.23277 0.77443 0.84123 0.85531 1.90648 1.37193 1.23317 1.87408 1.86682 1.72097 1.53520 1.14317 1.21709 0.97643 0.93457 0.80572 1.18607 0.99935 1.08745 0.97658 1.20472 0.96891 0.94516 0.95378 1.21103 1.00816 1.04588 0.98039 1.17743 0.91116 0.88876 0.92269 1.20707 0.96829 1.31037 1.05473 0.90280 1.27110 0.92107 1.01256 0.98037 1.70418 1.22453 1.17604 1.30519 0.83567 0.76831 0.74582 0.75621 1.19989 1.19828 1.20258 1.20901 1.02178 1.02035 1.00047 1.20437 0.94296 0.97495 0.94876 0.89775 0.91107 0.91063 0.91583 0.92070 0.89358 0.89946 0.89822 0.90320 0.91320 0.91351 0.91948 0.91965 0.89099 0.87573 0.88486 0.88608 0.89074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.87 9.50 37.16 0.35 -1.51 16 2 C 0.10 1.26 3.24 -27.88 -0.09 1.17 16 3 H 0.10 1.00 7.79 -51.93 -0.40 0.59 16 4 O -0.35 -4.86 9.52 -57.83 -0.55 -5.41 16 5 C 0.06 0.59 5.45 37.15 0.20 0.79 16 6 C 0.08 0.77 3.72 -25.71 -0.10 0.68 16 7 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 8 C -0.15 -0.86 6.58 -24.42 -0.16 -1.02 16 9 C -0.16 -0.81 7.02 -24.73 -0.17 -0.99 16 10 C 0.05 0.35 7.80 37.88 0.30 0.65 16 11 O -0.37 -4.17 11.04 -35.96 -0.40 -4.57 16 12 C 0.45 7.75 7.29 36.00 0.26 8.02 16 13 O -0.50 -9.97 16.26 -25.47 -0.41 -10.38 16 14 O -0.35 -6.39 10.20 -39.26 -0.40 -6.79 16 15 C 0.14 2.66 5.58 36.01 0.20 2.86 16 16 C -0.25 -5.43 5.54 -104.33 -0.58 -6.01 16 17 C -0.05 -1.23 9.67 -39.66 -0.38 -1.62 16 18 C -0.23 -5.67 7.97 -38.87 -0.31 -5.98 16 19 C 0.10 2.67 5.30 -106.83 -0.57 2.11 16 20 C -0.51 -13.29 8.98 -37.74 -0.34 -13.63 16 21 H 0.08 1.99 7.97 -52.49 -0.42 1.57 16 22 C 0.04 0.94 4.90 -17.34 -0.08 0.85 16 23 N -0.79 -20.38 12.38 55.55 0.69 -19.69 16 24 Si 1.07 20.94 30.01 -169.99 -5.10 15.84 16 25 H -0.28 -5.14 7.11 56.52 0.40 -4.74 16 26 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 27 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 28 C -0.23 -5.60 9.80 -38.87 -0.38 -5.98 16 29 C -0.05 -1.17 9.67 -39.66 -0.38 -1.55 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.63 7.87 -51.93 -0.41 0.23 16 33 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 34 H 0.06 0.51 7.87 -51.93 -0.41 0.10 16 35 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.41 8.06 -51.93 -0.42 -0.01 16 37 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.06 1.16 8.07 -51.93 -0.42 0.74 16 42 H 0.06 1.16 8.07 -51.93 -0.42 0.74 16 43 H 0.09 1.88 8.06 -52.48 -0.42 1.45 16 44 H 0.11 2.73 6.53 -52.49 -0.34 2.38 16 45 H 0.30 8.02 6.72 -40.82 -0.27 7.74 16 46 H 0.10 2.18 8.06 -52.48 -0.42 1.76 16 47 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 395.07 15.07 5.95 5.95 Total: -1.00 -30.88 395.07 -9.83 -40.71 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -7.38 Total: 5.51 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -2.23 Total: -21.17 kcal Atomic # 7 Polarization: -20.38 SS G_CDS: 0.69 Total: -19.69 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -1.76 Total: -27.16 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.10 Total: 15.84 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.88 -9.83 -40.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271909205.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.305 kcal (2) G-P(sol) polarization free energy of solvation -30.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds