Wall clock time and date at job start Tue Mar 31 2020 19:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46576 * 2 1 4 4 O 1.42894 * 109.47206 * 119.99699 * 2 1 3 5 5 C 1.42904 * 114.00238 * 270.00192 * 4 2 1 6 6 C 1.52994 * 109.47393 * 179.97438 * 5 4 2 7 7 H 1.08999 * 110.27388 * 54.29710 * 6 5 4 8 8 C 1.54943 * 110.31203 * 176.39242 * 6 5 4 9 9 C 1.55413 * 100.89498 * 155.28846 * 8 6 5 10 10 C 1.54374 * 102.30844 * 325.98956 * 9 8 6 11 11 O 1.43238 * 107.59116 * 21.28646 * 10 9 8 12 12 C 1.50697 * 109.47241 * 239.99923 * 2 1 3 13 13 O 1.20830 * 119.99993 * 244.99720 * 12 2 1 14 14 O 1.34231 * 120.00002 * 65.00162 * 12 2 1 15 15 C 1.45206 * 116.99614 * 180.02562 * 14 12 2 16 16 C 1.50708 * 109.46536 * 179.97438 * 15 14 12 17 17 C 1.38638 * 119.74865 * 90.00087 * 16 15 14 18 18 C 1.37614 * 120.24795 * 179.97438 * 17 16 15 19 19 C 1.40718 * 119.74637 * 359.97438 * 18 17 16 20 20 C 1.41389 * 120.24578 * 180.02562 * 19 18 17 21 21 H 1.08000 * 119.99865 * 205.11505 * 20 19 18 22 22 C 1.39948 * 119.99853 * 25.12217 * 20 19 18 23 23 N 1.30818 * 120.00279 * 27.12006 * 22 20 19 24 24 Si 1.86805 * 119.99677 * 206.84691 * 22 20 19 25 25 H 1.48505 * 109.47193 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47104 * 119.99803 * 24 22 20 27 27 H 1.48500 * 109.47047 * 239.99547 * 24 22 20 28 28 C 1.40718 * 119.50806 * 0.27463 * 19 18 17 29 29 C 1.37615 * 119.74548 * 359.47080 * 28 19 18 30 30 H 1.09000 * 109.47311 * 60.00619 * 1 2 3 31 31 H 1.09000 * 109.46779 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47699 * 300.00144 * 1 2 3 33 33 H 1.08998 * 109.47253 * 300.00450 * 5 4 2 34 34 H 1.09002 * 109.46619 * 59.99913 * 5 4 2 35 35 H 1.09003 * 111.12545 * 273.28453 * 8 6 5 36 36 H 1.09001 * 111.12473 * 37.44230 * 8 6 5 37 37 H 1.08997 * 110.88118 * 207.75072 * 9 8 6 38 38 H 1.09000 * 110.93165 * 84.25053 * 9 8 6 39 39 H 1.08998 * 109.83054 * 261.76835 * 10 9 8 40 40 H 1.09002 * 109.90483 * 140.84137 * 10 9 8 41 41 H 1.08998 * 109.47322 * 59.99694 * 15 14 12 42 42 H 1.09000 * 109.47135 * 299.99296 * 15 14 12 43 43 H 1.08003 * 119.87511 * 359.97147 * 17 16 15 44 44 H 1.07998 * 120.12483 * 179.97438 * 18 17 16 45 45 H 0.97001 * 120.00056 * 3.90147 * 23 22 20 46 46 H 1.08004 * 120.12740 * 179.70770 * 28 19 18 47 47 H 1.08001 * 119.87702 * 180.23074 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.2001 0.1831 2.2941 6 6 2.7079 -0.6406 3.4792 7 1 3.6004 -1.1987 3.1964 8 6 3.0109 0.2832 4.6857 9 6 2.8593 -0.7162 5.8662 10 6 1.7355 -1.6487 5.3656 11 8 1.6839 -1.5371 3.9386 12 6 2.0323 -0.7104 -1.2304 13 8 2.6507 -1.7428 -1.1218 14 8 1.7929 -0.1963 -2.4470 15 6 2.3061 -0.9345 -3.5872 16 6 1.9428 -0.2113 -4.8586 17 6 2.8055 0.7411 -5.3788 18 6 2.4843 1.4072 -6.5394 19 6 1.2751 1.1181 -7.1985 20 6 0.9347 1.7958 -8.3918 21 1 -0.1016 1.8980 -8.6780 22 6 1.9408 2.3340 -9.2022 23 7 3.1379 1.8065 -9.1960 24 14 1.5722 3.8011 -10.2983 25 1 0.1527 4.2024 -10.1274 26 1 2.4560 4.9339 -9.9230 27 1 1.8148 3.4328 -11.7163 28 6 0.4047 0.1533 -6.6584 29 6 0.7490 -0.5042 -5.4995 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 2.9318 0.9515 2.0450 34 1 1.2537 0.6547 2.5588 35 1 4.0250 0.6794 4.6321 36 1 2.2798 1.0884 4.7573 37 1 2.5574 -0.1989 6.7768 38 1 3.7828 -1.2727 6.0262 39 1 0.7818 -1.3422 5.7953 40 1 1.9543 -2.6785 5.6483 41 1 1.8693 -1.9331 -3.6001 42 1 3.3906 -1.0132 -3.5109 43 1 3.7332 0.9610 -4.8714 44 1 3.1576 2.1491 -6.9427 45 1 3.3135 1.0084 -8.6735 46 1 -0.5281 -0.0730 -7.1534 47 1 0.0843 -1.2478 -5.0851 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271909205.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:10 Heat of formation + Delta-G solvation = -189.649103 kcal Electronic energy + Delta-G solvation = -27537.409874 eV Core-core repulsion = 23455.865497 eV Total energy + Delta-G solvation = -4081.544376 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 16.57 seconds Orbital eigenvalues (eV) -41.68329 -40.52272 -39.76893 -38.89934 -37.46079 -35.94124 -33.45068 -33.03254 -32.35950 -31.38212 -31.09306 -28.80909 -26.73375 -26.03940 -24.95255 -23.09053 -22.62819 -22.32877 -22.11712 -21.77734 -19.90013 -18.89303 -18.35590 -18.04342 -17.57686 -17.13838 -16.87277 -16.58613 -16.30259 -16.10036 -15.84962 -15.61631 -15.46561 -14.80252 -14.66132 -14.24507 -14.11412 -14.06084 -13.90063 -13.75556 -13.47824 -13.33063 -13.12441 -12.95952 -12.79271 -12.67597 -12.59060 -12.29791 -12.20819 -12.11542 -11.97045 -11.82126 -11.70264 -11.50497 -11.46714 -11.37743 -10.89868 -10.77768 -10.49917 -9.67861 -9.56180 -9.24249 -6.52809 0.59327 0.91201 1.06388 1.40780 1.51067 1.69047 1.80245 2.30522 2.56204 2.74925 2.85412 3.42868 3.53602 3.65880 3.79270 3.85894 3.93010 3.96021 3.99345 4.00687 4.12599 4.22364 4.34117 4.35393 4.39888 4.40959 4.45723 4.55232 4.65957 4.72837 4.79665 4.81162 4.88524 4.96051 5.00074 5.04095 5.13137 5.14700 5.22895 5.37103 5.38943 5.66157 5.73637 5.77069 5.91799 5.97785 6.12269 6.17858 6.31568 6.68078 6.72673 6.86316 7.96529 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.030354 B = 0.001723 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.213681 B =16244.376931 C =16438.851598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.101 3.899 3 H 0.127 0.873 4 O -0.383 6.383 5 C 0.054 3.946 6 C 0.074 3.926 7 H 0.064 0.936 8 C -0.140 4.140 9 C -0.149 4.149 10 C 0.037 3.963 11 O -0.404 6.404 12 C 0.454 3.546 13 O -0.533 6.533 14 O -0.352 6.352 15 C 0.141 3.859 16 C -0.237 4.237 17 C -0.058 4.058 18 C -0.242 4.242 19 C 0.076 3.924 20 C -0.548 4.548 21 H 0.076 0.924 22 C 0.005 3.995 23 N -0.809 5.809 24 Si 1.121 2.879 25 H -0.262 1.262 26 H -0.266 1.266 27 H -0.266 1.266 28 C -0.246 4.246 29 C -0.054 4.054 30 H 0.085 0.915 31 H 0.055 0.945 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.112 0.888 44 H 0.091 0.909 45 H 0.285 0.715 46 H 0.102 0.898 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.344 1.568 26.286 26.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.042 3.958 3 H 0.145 0.855 4 O -0.303 6.303 5 C -0.021 4.021 6 C 0.017 3.983 7 H 0.082 0.918 8 C -0.178 4.178 9 C -0.187 4.187 10 C -0.039 4.039 11 O -0.325 6.325 12 C 0.298 3.702 13 O -0.422 6.422 14 O -0.269 6.269 15 C 0.069 3.931 16 C -0.238 4.238 17 C -0.077 4.077 18 C -0.261 4.261 19 C 0.073 3.927 20 C -0.576 4.576 21 H 0.094 0.906 22 C -0.213 4.213 23 N -0.431 5.431 24 Si 0.938 3.062 25 H -0.186 1.186 26 H -0.190 1.190 27 H -0.191 1.191 28 C -0.265 4.265 29 C -0.072 4.072 30 H 0.104 0.896 31 H 0.074 0.926 32 H 0.116 0.884 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.122 0.878 36 H 0.113 0.887 37 H 0.123 0.877 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.130 0.870 44 H 0.110 0.890 45 H 0.098 0.902 46 H 0.120 0.880 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.523 1.944 25.085 25.166 hybrid contribution -0.326 -1.463 0.870 1.733 sum -0.848 0.481 25.955 25.973 Atomic orbital electron populations 1.22182 0.91036 1.03555 1.05152 1.21560 0.96575 0.96339 0.81284 0.85514 1.88045 1.86901 1.35856 1.19468 1.23096 1.02031 0.92632 0.84367 1.23122 0.90625 0.90764 0.93801 0.91789 1.23271 1.04700 0.98036 0.91767 1.23137 0.99071 0.97008 0.99467 1.23345 1.00024 1.00275 0.80283 1.88509 1.55038 1.66729 1.22196 1.24199 0.76369 0.83783 0.85893 1.90634 1.38897 1.25001 1.87655 1.86644 1.72131 1.53370 1.14746 1.21546 0.98151 0.93364 0.80035 1.18915 0.99146 1.07369 0.98414 1.20728 0.97907 0.94304 0.94721 1.21071 1.00747 1.05243 0.99037 1.18085 0.91993 0.89701 0.92926 1.20891 0.97060 1.33184 1.06438 0.90589 1.28508 0.91283 1.02882 0.98595 1.70536 1.23363 1.17691 1.31524 0.82958 0.77404 0.71494 0.74343 1.18646 1.19030 1.19068 1.21104 1.02397 1.02105 1.00921 1.20754 0.94807 0.97508 0.94122 0.89590 0.92568 0.88374 0.89323 0.90552 0.87783 0.88703 0.87731 0.90020 0.90408 0.91506 0.91125 0.91365 0.87015 0.89045 0.90228 0.87962 0.86224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.24 9.50 71.98 0.68 -2.56 16 2 C 0.10 2.41 3.24 29.85 0.10 2.51 16 3 H 0.13 2.21 7.79 -2.39 -0.02 2.19 16 4 O -0.38 -10.05 9.52 -127.37 -1.21 -11.27 16 5 C 0.05 0.92 5.45 71.98 0.39 1.32 16 6 C 0.07 1.28 3.72 31.26 0.12 1.40 16 7 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 8 C -0.14 -1.24 6.58 32.09 0.21 -1.03 16 9 C -0.15 -1.23 7.02 31.89 0.22 -1.00 16 10 C 0.04 0.51 7.80 72.45 0.56 1.07 16 11 O -0.40 -8.92 11.04 -148.29 -1.64 -10.56 16 12 C 0.45 14.84 7.29 71.23 0.52 15.36 16 13 O -0.53 -21.00 16.26 28.37 0.46 -20.54 16 14 O -0.35 -12.26 10.20 -51.43 -0.52 -12.78 16 15 C 0.14 5.21 5.58 71.24 0.40 5.61 16 16 C -0.24 -10.09 5.54 -19.67 -0.11 -10.20 16 17 C -0.06 -2.64 9.67 22.22 0.21 -2.42 16 18 C -0.24 -12.37 7.97 22.73 0.18 -12.19 16 19 C 0.08 4.02 5.30 -21.29 -0.11 3.91 16 20 C -0.55 -29.17 8.98 23.46 0.21 -28.96 16 21 H 0.08 3.94 7.97 -2.91 -0.02 3.92 16 22 C 0.00 0.23 4.90 85.26 0.42 0.65 16 23 N -0.81 -43.05 12.38 21.83 0.27 -42.78 16 24 Si 1.12 42.16 30.01 68.60 2.06 44.22 16 25 H -0.26 -9.21 7.11 99.48 0.71 -8.51 16 26 H -0.27 -9.60 7.11 99.48 0.71 -8.89 16 27 H -0.27 -9.46 7.11 99.48 0.71 -8.75 16 28 C -0.25 -11.91 9.80 22.73 0.22 -11.69 16 29 C -0.05 -2.32 9.67 22.22 0.21 -2.11 16 30 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.10 1.43 7.87 -2.39 -0.02 1.42 16 33 H 0.09 1.06 8.08 -2.39 -0.02 1.04 16 34 H 0.08 1.04 7.87 -2.39 -0.02 1.02 16 35 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.09 0.62 8.06 -2.39 -0.02 0.60 16 37 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.07 2.50 8.07 -2.39 -0.02 2.48 16 42 H 0.07 2.44 8.07 -2.39 -0.02 2.42 16 43 H 0.11 4.51 8.06 -2.91 -0.02 4.48 16 44 H 0.09 4.87 6.53 -2.91 -0.02 4.86 16 45 H 0.29 15.84 6.72 -92.71 -0.62 15.22 16 46 H 0.10 4.69 8.06 -2.91 -0.02 4.67 16 47 H 0.12 4.45 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -68.89 395.07 4.96 -63.93 By element: Atomic # 1 Polarization: 29.02 SS G_CDS: 1.10 Total: 30.12 kcal Atomic # 6 Polarization: -44.79 SS G_CDS: 4.45 Total: -40.35 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: 0.27 Total: -42.78 kcal Atomic # 8 Polarization: -52.23 SS G_CDS: -2.91 Total: -55.14 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.06 Total: 44.22 kcal Total: -68.89 4.96 -63.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271909205.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.722 kcal (2) G-P(sol) polarization free energy of solvation -68.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 16.57 seconds