Wall clock time and date at job start Tue Mar 31 2020 19:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46764 * 2 1 4 4 O 1.42899 * 109.47015 * 240.00105 * 2 1 3 5 5 C 1.42897 * 114.00021 * 90.00451 * 4 2 1 6 6 C 1.53001 * 109.47191 * 180.02562 * 5 4 2 7 7 H 1.08999 * 110.27913 * 54.29051 * 6 5 4 8 8 C 1.54939 * 110.31082 * 176.38721 * 6 5 4 9 9 C 1.55416 * 100.89303 * 155.28444 * 8 6 5 10 10 C 1.54378 * 102.31135 * 325.98718 * 9 8 6 11 11 O 1.43246 * 107.58658 * 21.28658 * 10 9 8 12 12 C 1.50697 * 109.47179 * 119.99727 * 2 1 3 13 13 O 1.20830 * 119.99993 * 115.00187 * 12 2 1 14 14 O 1.34231 * 120.00002 * 295.00629 * 12 2 1 15 15 C 1.45206 * 116.99614 * 180.02562 * 14 12 2 16 16 C 1.50708 * 109.46536 * 179.97438 * 15 14 12 17 17 C 1.38638 * 119.74865 * 90.00087 * 16 15 14 18 18 C 1.37614 * 120.24795 * 179.97438 * 17 16 15 19 19 C 1.40718 * 119.74637 * 359.97438 * 18 17 16 20 20 C 1.41389 * 120.24578 * 180.02562 * 19 18 17 21 21 H 1.08000 * 119.99865 * 205.11505 * 20 19 18 22 22 C 1.39948 * 119.99853 * 25.12217 * 20 19 18 23 23 N 1.30818 * 120.00279 * 27.12006 * 22 20 19 24 24 Si 1.86805 * 119.99677 * 206.84691 * 22 20 19 25 25 H 1.48505 * 109.47193 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47104 * 119.99803 * 24 22 20 27 27 H 1.48500 * 109.47047 * 239.99547 * 24 22 20 28 28 C 1.40718 * 119.50806 * 0.27463 * 19 18 17 29 29 C 1.37615 * 119.74548 * 359.47080 * 28 19 18 30 30 H 1.08994 * 109.47078 * 299.99701 * 1 2 3 31 31 H 1.09001 * 109.47254 * 60.00539 * 1 2 3 32 32 H 1.08997 * 109.46764 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46747 * 299.99251 * 5 4 2 34 34 H 1.09000 * 109.47693 * 59.99081 * 5 4 2 35 35 H 1.09005 * 111.12517 * 273.27025 * 8 6 5 36 36 H 1.09001 * 111.12986 * 37.43487 * 8 6 5 37 37 H 1.09006 * 110.88252 * 207.75363 * 9 8 6 38 38 H 1.09000 * 110.93401 * 84.25206 * 9 8 6 39 39 H 1.09003 * 109.83246 * 261.77642 * 10 9 8 40 40 H 1.08994 * 109.90802 * 140.83937 * 10 9 8 41 41 H 1.08998 * 109.47322 * 59.99694 * 15 14 12 42 42 H 1.09000 * 109.47135 * 299.99296 * 15 14 12 43 43 H 1.08003 * 119.87511 * 359.97147 * 17 16 15 44 44 H 1.07998 * 120.12483 * 179.97438 * 18 17 16 45 45 H 0.97001 * 120.00056 * 3.90147 * 23 22 20 46 46 H 1.08004 * 120.12740 * 179.70770 * 28 19 18 47 47 H 1.08001 * 119.87702 * 180.23074 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2002 0.1830 -2.2940 6 6 2.7080 -0.6407 -3.4792 7 1 2.0347 -1.4752 -3.6754 8 6 2.8386 0.2526 -4.7384 9 6 3.9122 -0.5307 -5.5441 10 6 4.8072 -1.1071 -4.4260 11 8 4.0361 -1.1224 -3.2189 12 6 2.0324 -0.7103 1.2305 13 8 2.6508 -1.7427 1.1219 14 8 1.7928 -0.1962 2.4470 15 6 2.3070 -0.9338 3.5873 16 6 1.9444 -0.2100 4.8585 17 6 0.7506 -0.5022 5.4999 18 6 0.4095 0.1521 6.6615 19 6 1.2781 1.1204 7.1983 20 6 0.9385 1.7986 8.3915 21 1 1.3497 2.7768 8.5924 22 6 0.0695 1.2022 9.3122 23 7 -0.0158 -0.1014 9.3817 24 14 -0.9630 2.2675 10.4474 25 1 -0.6791 3.6997 10.1762 26 1 -2.4030 1.9940 10.2089 27 1 -0.6273 1.9557 11.8600 28 6 2.4847 1.4124 6.5358 29 6 2.8078 0.7420 5.3783 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.2539 0.6546 -2.5588 34 1 2.9320 0.9514 -2.0450 35 1 1.8960 0.3035 -5.2834 36 1 3.1938 1.2495 -4.4777 37 1 4.4804 0.1401 -6.1886 38 1 3.4553 -1.3308 -6.1264 39 1 5.6870 -0.4770 -4.2948 40 1 5.1138 -2.1213 -4.6817 41 1 3.3915 -1.0117 3.5105 42 1 1.8710 -1.9327 3.6004 43 1 0.0857 -1.2460 5.0862 44 1 -0.5212 -0.0768 7.1592 45 1 0.5638 -0.6551 8.8354 46 1 3.1566 2.1572 6.9364 47 1 3.7351 0.9618 4.8701 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271909208.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:33 Heat of formation + Delta-G solvation = -173.617486 kcal Electronic energy + Delta-G solvation = -27580.944560 eV Core-core repulsion = 23500.095367 eV Total energy + Delta-G solvation = -4080.849193 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.33135 -39.79566 -38.17278 -37.67211 -35.95027 -34.10727 -32.66463 -32.27367 -30.74067 -30.27523 -29.49686 -27.08234 -25.99221 -24.69619 -23.48119 -22.09877 -21.67313 -21.21465 -20.67680 -20.18148 -18.01565 -17.69944 -17.31084 -17.07574 -16.47729 -16.10302 -15.86887 -15.43509 -14.94228 -14.66275 -14.43124 -14.25165 -13.92469 -13.83403 -13.59913 -13.22897 -12.87729 -12.71903 -12.41160 -12.29023 -12.22360 -12.17906 -12.06665 -11.90230 -11.78453 -11.55264 -11.42791 -11.25113 -11.21613 -11.00473 -10.60943 -10.48593 -10.24503 -10.21641 -9.81992 -9.78192 -9.67728 -9.58232 -9.04429 -7.78348 -7.66379 -7.31068 -4.55644 2.24350 2.43240 2.81323 2.81908 3.10589 3.20423 3.29720 3.42059 3.69637 3.93515 4.01397 4.39091 4.43447 4.48348 4.64298 4.71187 4.79753 4.83286 4.89923 5.00346 5.05525 5.10960 5.21937 5.33599 5.41571 5.42937 5.46960 5.50698 5.55236 5.62540 5.65289 5.69358 5.94711 6.02637 6.13212 6.17172 6.68486 6.69094 6.82477 6.85159 6.92651 7.04390 7.29577 7.55913 7.66741 7.71827 7.85168 8.08241 8.09286 8.21205 8.65078 8.77238 9.92582 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.032228 B = 0.001744 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.589058 B =16049.555116 C =16243.113044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.097 3.903 3 H 0.096 0.904 4 O -0.352 6.352 5 C 0.061 3.939 6 C 0.084 3.916 7 H 0.081 0.919 8 C -0.149 4.149 9 C -0.155 4.155 10 C 0.047 3.953 11 O -0.367 6.367 12 C 0.454 3.546 13 O -0.495 6.495 14 O -0.350 6.350 15 C 0.138 3.862 16 C -0.248 4.248 17 C -0.054 4.054 18 C -0.226 4.226 19 C 0.103 3.897 20 C -0.514 4.514 21 H 0.079 0.921 22 C 0.038 3.962 23 N -0.788 5.788 24 Si 1.071 2.929 25 H -0.275 1.275 26 H -0.273 1.273 27 H -0.277 1.277 28 C -0.232 4.232 29 C -0.053 4.053 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.091 0.909 44 H 0.106 0.894 45 H 0.301 0.699 46 H 0.096 0.904 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.861 2.231 -24.568 24.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.038 3.962 3 H 0.114 0.886 4 O -0.271 6.271 5 C -0.016 4.016 6 C 0.026 3.974 7 H 0.099 0.901 8 C -0.187 4.187 9 C -0.192 4.192 10 C -0.030 4.030 11 O -0.286 6.286 12 C 0.295 3.705 13 O -0.382 6.382 14 O -0.267 6.267 15 C 0.066 3.934 16 C -0.249 4.249 17 C -0.072 4.072 18 C -0.245 4.245 19 C 0.100 3.900 20 C -0.541 4.541 21 H 0.097 0.903 22 C -0.185 4.185 23 N -0.410 5.410 24 Si 0.894 3.106 25 H -0.200 1.200 26 H -0.198 1.198 27 H -0.203 1.203 28 C -0.252 4.252 29 C -0.072 4.072 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.109 0.891 44 H 0.124 0.876 45 H 0.115 0.885 46 H 0.114 0.886 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.025 1.510 -23.155 23.227 hybrid contribution 1.232 0.202 -1.471 1.929 sum 2.257 1.712 -24.626 24.789 Atomic orbital electron populations 1.22213 0.92568 1.03989 1.03838 1.21414 0.95458 0.95994 0.83382 0.88584 1.88069 1.86616 1.33758 1.18607 1.22799 0.99701 0.92933 0.86121 1.22972 0.85866 0.95965 0.92569 0.90127 1.23271 1.00294 0.99630 0.95521 1.23131 0.97380 1.00334 0.98399 1.23155 0.94691 1.00945 0.84225 1.88596 1.22659 1.86392 1.30985 1.23257 0.77546 0.84184 0.85498 1.90659 1.36955 1.23282 1.87351 1.86676 1.72103 1.53593 1.14328 1.21705 0.97615 0.93497 0.80568 1.18609 1.00303 1.08333 0.97635 1.20475 0.94388 0.97398 0.94969 1.21105 1.00632 1.04181 0.98619 1.17742 0.89737 0.90192 0.92337 1.20702 1.25151 1.05013 1.03208 0.90298 1.27108 0.96003 0.96919 0.98482 1.70417 1.32697 1.05726 1.32155 0.83566 0.76455 0.75185 0.75385 1.20005 1.19822 1.20266 1.20898 0.98264 1.06161 0.99856 1.20438 0.96990 0.94476 0.95253 0.89644 0.91118 0.91137 0.91507 0.92179 0.89390 0.89947 0.89824 0.90340 0.91297 0.91324 0.91988 0.91933 0.89061 0.87566 0.88482 0.88627 0.89108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.78 9.51 37.16 0.35 -1.43 16 2 C 0.10 1.26 3.24 -27.88 -0.09 1.17 16 3 H 0.10 1.02 7.79 -51.93 -0.40 0.62 16 4 O -0.35 -4.86 9.52 -57.83 -0.55 -5.41 16 5 C 0.06 0.58 5.45 37.16 0.20 0.79 16 6 C 0.08 0.77 3.72 -25.71 -0.10 0.68 16 7 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 8 C -0.15 -0.85 6.58 -24.43 -0.16 -1.01 16 9 C -0.15 -0.83 7.02 -24.73 -0.17 -1.00 16 10 C 0.05 0.37 7.80 37.88 0.30 0.67 16 11 O -0.37 -4.46 11.04 -35.96 -0.40 -4.85 16 12 C 0.45 7.87 7.29 36.00 0.26 8.13 16 13 O -0.50 -10.16 16.26 -25.47 -0.41 -10.57 16 14 O -0.35 -6.48 10.20 -39.26 -0.40 -6.88 16 15 C 0.14 2.69 5.58 36.01 0.20 2.89 16 16 C -0.25 -5.45 5.54 -104.33 -0.58 -6.03 16 17 C -0.05 -1.23 9.67 -39.66 -0.38 -1.62 16 18 C -0.23 -5.69 7.97 -38.87 -0.31 -6.00 16 19 C 0.10 2.68 5.30 -106.83 -0.57 2.12 16 20 C -0.51 -13.33 8.98 -37.74 -0.34 -13.67 16 21 H 0.08 1.99 7.97 -52.49 -0.42 1.57 16 22 C 0.04 0.94 4.90 -17.34 -0.08 0.86 16 23 N -0.79 -20.44 12.38 55.55 0.69 -19.76 16 24 Si 1.07 21.01 30.01 -169.99 -5.10 15.90 16 25 H -0.28 -5.16 7.11 56.52 0.40 -4.76 16 26 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 27 H -0.28 -5.28 7.11 56.52 0.40 -4.87 16 28 C -0.23 -5.63 9.80 -38.87 -0.38 -6.01 16 29 C -0.05 -1.19 9.67 -39.66 -0.38 -1.57 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.55 7.87 -51.93 -0.41 0.14 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.44 7.87 -51.93 -0.41 0.04 16 34 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 35 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.42 8.06 -51.93 -0.42 0.00 16 37 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 1.17 8.07 -51.93 -0.42 0.75 16 42 H 0.06 1.18 8.07 -51.93 -0.42 0.77 16 43 H 0.09 1.90 8.06 -52.48 -0.42 1.47 16 44 H 0.11 2.74 6.53 -52.49 -0.34 2.40 16 45 H 0.30 8.05 6.72 -40.82 -0.27 7.77 16 46 H 0.10 2.19 8.06 -52.48 -0.42 1.76 16 47 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 395.08 15.07 5.95 5.95 Total: -1.00 -31.39 395.08 -9.83 -41.22 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -7.38 Total: 5.44 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: -2.23 Total: -21.05 kcal Atomic # 7 Polarization: -20.44 SS G_CDS: 0.69 Total: -19.76 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -1.76 Total: -27.71 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.10 Total: 15.90 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.39 -9.83 -41.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271909208.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.398 kcal (2) G-P(sol) polarization free energy of solvation -31.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds