Wall clock time and date at job start Tue Mar 31 2020 19:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46764 * 2 1 4 4 O 1.42899 * 109.47015 * 240.00105 * 2 1 3 5 5 C 1.42897 * 114.00021 * 90.00451 * 4 2 1 6 6 C 1.53001 * 109.47191 * 180.02562 * 5 4 2 7 7 H 1.08999 * 110.27913 * 54.29051 * 6 5 4 8 8 C 1.54939 * 110.31082 * 176.38721 * 6 5 4 9 9 C 1.55416 * 100.89303 * 155.28444 * 8 6 5 10 10 C 1.54378 * 102.31135 * 325.98718 * 9 8 6 11 11 O 1.43246 * 107.58658 * 21.28658 * 10 9 8 12 12 C 1.50697 * 109.47179 * 119.99727 * 2 1 3 13 13 O 1.20830 * 119.99993 * 115.00187 * 12 2 1 14 14 O 1.34231 * 120.00002 * 295.00629 * 12 2 1 15 15 C 1.45206 * 116.99614 * 180.02562 * 14 12 2 16 16 C 1.50708 * 109.46536 * 179.97438 * 15 14 12 17 17 C 1.38638 * 119.74865 * 90.00087 * 16 15 14 18 18 C 1.37614 * 120.24795 * 179.97438 * 17 16 15 19 19 C 1.40718 * 119.74637 * 359.97438 * 18 17 16 20 20 C 1.41389 * 120.24578 * 180.02562 * 19 18 17 21 21 H 1.08000 * 119.99865 * 205.11505 * 20 19 18 22 22 C 1.39948 * 119.99853 * 25.12217 * 20 19 18 23 23 N 1.30818 * 120.00279 * 27.12006 * 22 20 19 24 24 Si 1.86805 * 119.99677 * 206.84691 * 22 20 19 25 25 H 1.48505 * 109.47193 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47104 * 119.99803 * 24 22 20 27 27 H 1.48500 * 109.47047 * 239.99547 * 24 22 20 28 28 C 1.40718 * 119.50806 * 0.27463 * 19 18 17 29 29 C 1.37615 * 119.74548 * 359.47080 * 28 19 18 30 30 H 1.08994 * 109.47078 * 299.99701 * 1 2 3 31 31 H 1.09001 * 109.47254 * 60.00539 * 1 2 3 32 32 H 1.08997 * 109.46764 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46747 * 299.99251 * 5 4 2 34 34 H 1.09000 * 109.47693 * 59.99081 * 5 4 2 35 35 H 1.09005 * 111.12517 * 273.27025 * 8 6 5 36 36 H 1.09001 * 111.12986 * 37.43487 * 8 6 5 37 37 H 1.09006 * 110.88252 * 207.75363 * 9 8 6 38 38 H 1.09000 * 110.93401 * 84.25206 * 9 8 6 39 39 H 1.09003 * 109.83246 * 261.77642 * 10 9 8 40 40 H 1.08994 * 109.90802 * 140.83937 * 10 9 8 41 41 H 1.08998 * 109.47322 * 59.99694 * 15 14 12 42 42 H 1.09000 * 109.47135 * 299.99296 * 15 14 12 43 43 H 1.08003 * 119.87511 * 359.97147 * 17 16 15 44 44 H 1.07998 * 120.12483 * 179.97438 * 18 17 16 45 45 H 0.97001 * 120.00056 * 3.90147 * 23 22 20 46 46 H 1.08004 * 120.12740 * 179.70770 * 28 19 18 47 47 H 1.08001 * 119.87702 * 180.23074 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2002 0.1830 -2.2940 6 6 2.7080 -0.6407 -3.4792 7 1 2.0347 -1.4752 -3.6754 8 6 2.8386 0.2526 -4.7384 9 6 3.9122 -0.5307 -5.5441 10 6 4.8072 -1.1071 -4.4260 11 8 4.0361 -1.1224 -3.2189 12 6 2.0324 -0.7103 1.2305 13 8 2.6508 -1.7427 1.1219 14 8 1.7928 -0.1962 2.4470 15 6 2.3070 -0.9338 3.5873 16 6 1.9444 -0.2100 4.8585 17 6 0.7506 -0.5022 5.4999 18 6 0.4095 0.1521 6.6615 19 6 1.2781 1.1204 7.1983 20 6 0.9385 1.7986 8.3915 21 1 1.3497 2.7768 8.5924 22 6 0.0695 1.2022 9.3122 23 7 -0.0158 -0.1014 9.3817 24 14 -0.9630 2.2675 10.4474 25 1 -0.6791 3.6997 10.1762 26 1 -2.4030 1.9940 10.2089 27 1 -0.6273 1.9557 11.8600 28 6 2.4847 1.4124 6.5358 29 6 2.8078 0.7420 5.3783 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.2539 0.6546 -2.5588 34 1 2.9320 0.9514 -2.0450 35 1 1.8960 0.3035 -5.2834 36 1 3.1938 1.2495 -4.4777 37 1 4.4804 0.1401 -6.1886 38 1 3.4553 -1.3308 -6.1264 39 1 5.6870 -0.4770 -4.2948 40 1 5.1138 -2.1213 -4.6817 41 1 3.3915 -1.0117 3.5105 42 1 1.8710 -1.9327 3.6004 43 1 0.0857 -1.2460 5.0862 44 1 -0.5212 -0.0768 7.1592 45 1 0.5638 -0.6551 8.8354 46 1 3.1566 2.1572 6.9364 47 1 3.7351 0.9618 4.8701 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271909208.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:32 Heat of formation + Delta-G solvation = -189.883917 kcal Electronic energy + Delta-G solvation = -27581.649926 eV Core-core repulsion = 23500.095367 eV Total energy + Delta-G solvation = -4081.554559 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = -5.44 seconds Orbital eigenvalues (eV) -41.68021 -40.52351 -39.77215 -38.90184 -37.46165 -35.94298 -33.43939 -33.04149 -32.36264 -31.38671 -31.09091 -28.81273 -26.73980 -26.03333 -24.94149 -23.09415 -22.63013 -22.34299 -22.11765 -21.77764 -19.90160 -18.88928 -18.24426 -17.99389 -17.73440 -17.18047 -16.88860 -16.57257 -16.26794 -16.05362 -16.02549 -15.55781 -15.34961 -14.89595 -14.50155 -14.32662 -14.17786 -14.05249 -13.82315 -13.70144 -13.61686 -13.34352 -13.10942 -12.94386 -12.79486 -12.68971 -12.55546 -12.29909 -12.19057 -12.10756 -11.97010 -11.82587 -11.69879 -11.49737 -11.48615 -11.37778 -10.89859 -10.77432 -10.50540 -9.68180 -9.56532 -9.24383 -6.52963 0.59220 0.90799 1.07175 1.41275 1.51083 1.69256 1.80257 2.30563 2.56134 2.74416 2.87154 3.42662 3.53861 3.65675 3.80058 3.82673 3.95344 3.96606 3.99039 4.01168 4.12683 4.21874 4.33788 4.35297 4.39232 4.40423 4.46848 4.55035 4.66554 4.74148 4.79265 4.80556 4.88165 4.96051 4.99990 5.03681 5.14161 5.14823 5.22939 5.37073 5.38894 5.65831 5.73354 5.76742 5.92215 5.97517 6.13796 6.17551 6.31141 6.68597 6.72442 6.86171 7.96406 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.032228 B = 0.001744 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.589058 B =16049.555116 C =16243.113044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.101 3.899 3 H 0.124 0.876 4 O -0.383 6.383 5 C 0.054 3.946 6 C 0.073 3.927 7 H 0.073 0.927 8 C -0.139 4.139 9 C -0.148 4.148 10 C 0.035 3.965 11 O -0.410 6.410 12 C 0.452 3.548 13 O -0.533 6.533 14 O -0.352 6.352 15 C 0.141 3.859 16 C -0.237 4.237 17 C -0.058 4.058 18 C -0.241 4.241 19 C 0.076 3.924 20 C -0.548 4.548 21 H 0.076 0.924 22 C 0.004 3.996 23 N -0.809 5.809 24 Si 1.122 2.878 25 H -0.262 1.262 26 H -0.266 1.266 27 H -0.266 1.266 28 C -0.246 4.246 29 C -0.054 4.054 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.058 0.942 33 H 0.102 0.898 34 H 0.063 0.937 35 H 0.110 0.890 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.111 0.889 44 H 0.092 0.908 45 H 0.285 0.715 46 H 0.103 0.897 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.283 3.732 -26.946 27.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 H 0.141 0.859 4 O -0.303 6.303 5 C -0.021 4.021 6 C 0.015 3.985 7 H 0.091 0.909 8 C -0.176 4.176 9 C -0.186 4.186 10 C -0.041 4.041 11 O -0.331 6.331 12 C 0.295 3.705 13 O -0.422 6.422 14 O -0.269 6.269 15 C 0.069 3.931 16 C -0.238 4.238 17 C -0.076 4.076 18 C -0.261 4.261 19 C 0.073 3.927 20 C -0.575 4.575 21 H 0.094 0.906 22 C -0.213 4.213 23 N -0.431 5.431 24 Si 0.938 3.062 25 H -0.186 1.186 26 H -0.190 1.190 27 H -0.191 1.191 28 C -0.265 4.265 29 C -0.072 4.072 30 H 0.102 0.898 31 H 0.124 0.876 32 H 0.077 0.923 33 H 0.120 0.880 34 H 0.081 0.919 35 H 0.129 0.871 36 H 0.109 0.891 37 H 0.121 0.879 38 H 0.104 0.896 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.129 0.871 44 H 0.110 0.890 45 H 0.098 0.902 46 H 0.121 0.879 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.459 3.015 -25.566 25.747 hybrid contribution 1.546 -0.354 -0.957 1.852 sum 2.005 2.661 -26.523 26.731 Atomic orbital electron populations 1.22211 0.90508 1.03776 1.05465 1.21572 0.96744 0.96179 0.81264 0.85889 1.88041 1.86928 1.35684 1.19617 1.23117 1.01571 0.92627 0.84832 1.23197 0.84632 0.96568 0.94059 0.90920 1.23273 1.01471 0.99134 0.93769 1.23137 0.96978 1.00801 0.97651 1.23348 0.95140 1.01323 0.84275 1.88547 1.24251 1.86935 1.33344 1.24282 0.76405 0.83849 0.85963 1.90643 1.38792 1.25121 1.87640 1.86642 1.72133 1.53400 1.14760 1.21537 0.98173 0.93287 0.80111 1.18906 0.99364 1.07229 0.98320 1.20723 0.95197 0.97433 0.94291 1.21070 1.00365 1.05085 0.99543 1.18085 0.90684 0.90883 0.93056 1.20890 1.27159 1.05341 1.04137 0.90555 1.28516 0.96280 0.97218 0.99272 1.70536 1.33319 1.06369 1.32882 0.82955 0.75133 0.74125 0.73962 1.18616 1.19041 1.19070 1.21103 0.97978 1.06822 1.00602 1.20752 0.98039 0.93820 0.94636 0.89834 0.87634 0.92283 0.88034 0.91918 0.87116 0.89126 0.87884 0.89631 0.90968 0.91501 0.91183 0.91505 0.87078 0.89030 0.90236 0.87916 0.86246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 9.51 71.98 0.68 -2.32 16 2 C 0.10 2.42 3.24 29.85 0.10 2.51 16 3 H 0.12 2.25 7.79 -2.39 -0.02 2.23 16 4 O -0.38 -10.03 9.52 -127.37 -1.21 -11.24 16 5 C 0.05 0.91 5.45 71.98 0.39 1.30 16 6 C 0.07 1.23 3.72 31.26 0.12 1.35 16 7 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 8 C -0.14 -1.17 6.58 32.09 0.21 -0.96 16 9 C -0.15 -1.25 7.02 31.89 0.22 -1.02 16 10 C 0.04 0.54 7.80 72.45 0.56 1.11 16 11 O -0.41 -9.89 11.04 -148.28 -1.64 -11.53 16 12 C 0.45 15.16 7.29 71.23 0.52 15.67 16 13 O -0.53 -21.74 16.26 28.37 0.46 -21.28 16 14 O -0.35 -12.53 10.20 -51.43 -0.52 -13.05 16 15 C 0.14 5.32 5.58 71.24 0.40 5.72 16 16 C -0.24 -10.21 5.54 -19.67 -0.11 -10.32 16 17 C -0.06 -2.66 9.67 22.22 0.21 -2.44 16 18 C -0.24 -12.43 7.97 22.73 0.18 -12.25 16 19 C 0.08 4.04 5.30 -21.29 -0.11 3.93 16 20 C -0.55 -29.21 8.98 23.46 0.21 -29.00 16 21 H 0.08 3.96 7.97 -2.91 -0.02 3.94 16 22 C 0.00 0.23 4.90 85.26 0.42 0.64 16 23 N -0.81 -43.21 12.38 21.83 0.27 -42.94 16 24 Si 1.12 42.27 30.01 68.60 2.06 44.33 16 25 H -0.26 -9.21 7.11 99.48 0.71 -8.51 16 26 H -0.27 -9.63 7.11 99.48 0.71 -8.93 16 27 H -0.27 -9.48 7.11 99.48 0.71 -8.77 16 28 C -0.25 -11.96 9.80 22.73 0.22 -11.73 16 29 C -0.05 -2.37 9.67 22.22 0.21 -2.16 16 30 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.10 1.22 7.87 -2.39 -0.02 1.20 16 32 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.10 0.95 7.87 -2.39 -0.02 0.93 16 34 H 0.06 1.00 8.08 -2.39 -0.02 0.98 16 35 H 0.11 0.44 8.14 -2.38 -0.02 0.42 16 36 H 0.09 0.63 8.06 -2.39 -0.02 0.61 16 37 H 0.10 0.48 8.14 -2.38 -0.02 0.47 16 38 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.07 2.54 8.07 -2.39 -0.02 2.52 16 42 H 0.07 2.46 8.07 -2.39 -0.02 2.44 16 43 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 44 H 0.09 4.91 6.53 -2.91 -0.02 4.89 16 45 H 0.29 15.91 6.72 -92.71 -0.62 15.29 16 46 H 0.10 4.73 8.06 -2.91 -0.02 4.70 16 47 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -70.66 395.08 4.96 -65.71 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: 1.10 Total: 29.97 kcal Atomic # 6 Polarization: -44.42 SS G_CDS: 4.45 Total: -39.97 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: 0.27 Total: -42.94 kcal Atomic # 8 Polarization: -54.19 SS G_CDS: -2.91 Total: -57.11 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.06 Total: 44.33 kcal Total: -70.66 4.96 -65.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271909208.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.177 kcal (2) G-P(sol) polarization free energy of solvation -70.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -5.44 seconds