Wall clock time and date at job start Tue Mar 31 2020 17:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47208 * 2 1 4 4 C 1.53000 * 109.47095 * 120.00060 * 2 1 3 5 5 C 1.52995 * 109.47655 * 64.99819 * 4 2 1 6 6 N 1.46494 * 109.47461 * 180.02562 * 5 4 2 7 7 C 1.46501 * 120.00191 * 269.99696 * 6 5 4 8 8 C 1.50700 * 109.47392 * 275.82433 * 7 6 5 9 9 H 1.08000 * 119.99823 * 359.97438 * 8 7 6 10 10 C 1.37871 * 119.99822 * 179.97438 * 8 7 6 11 11 N 1.31510 * 120.00455 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99763 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47263 * 59.99501 * 12 10 8 14 14 H 1.48503 * 109.47309 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47076 * 299.99488 * 12 10 8 16 16 C 1.34776 * 120.00344 * 89.99869 * 6 5 4 17 17 O 1.21601 * 119.99733 * 4.70230 * 16 6 5 18 18 C 1.47490 * 120.00233 * 184.70043 * 16 6 5 19 19 C 1.39112 * 120.30747 * 306.33085 * 18 16 6 20 20 C 1.38690 * 120.35484 * 180.02562 * 19 18 16 21 21 F 1.35093 * 119.65130 * 180.02562 * 20 19 18 22 22 C 1.38139 * 120.69624 * 0.02562 * 20 19 18 23 23 C 1.38897 * 120.07533 * 0.27619 * 22 20 19 24 24 N 1.37316 * 134.85095 * 179.70359 * 23 22 20 25 25 H 0.97002 * 125.94603 * 359.97438 * 24 23 22 26 26 N 1.28820 * 108.10671 * 180.02562 * 24 23 22 27 27 N 1.28675 * 111.71339 * 359.41194 * 26 24 23 28 28 C 1.34506 * 109.27127 * 0.69417 * 27 26 24 29 29 H 1.09004 * 109.47746 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47651 * 300.00279 * 1 2 3 31 31 H 1.09006 * 109.47165 * 60.00491 * 1 2 3 32 32 H 1.08997 * 109.47012 * 239.99352 * 2 1 3 33 33 H 1.09001 * 109.46967 * 180.02562 * 3 2 1 34 34 H 1.09006 * 109.46657 * 299.99820 * 3 2 1 35 35 H 1.08992 * 109.47219 * 59.99638 * 3 2 1 36 36 H 1.09006 * 109.46916 * 304.99670 * 4 2 1 37 37 H 1.09001 * 109.47342 * 185.00443 * 4 2 1 38 38 H 1.08998 * 109.47219 * 59.99675 * 5 4 2 39 39 H 1.09010 * 109.47090 * 300.00396 * 5 4 2 40 40 H 1.09005 * 109.46633 * 35.81962 * 7 6 5 41 41 H 1.08996 * 109.47100 * 155.81831 * 7 6 5 42 42 H 0.97003 * 120.00559 * 180.02562 * 11 10 8 43 43 H 1.08003 * 119.82512 * 0.02562 * 19 18 16 44 44 H 1.07998 * 119.96541 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6352 -2.1954 1.1881 6 7 2.1230 -2.8859 2.3845 7 6 3.4512 -3.5040 2.3832 8 6 3.3637 -4.8816 1.7787 9 1 2.4136 -5.2592 1.4306 10 6 4.4965 -5.6599 1.6699 11 7 5.6535 -5.2001 2.0933 12 14 4.3878 -7.3679 0.9211 13 1 3.8870 -7.2662 -0.4732 14 1 5.7344 -7.9939 0.9186 15 1 3.4556 -8.2012 1.7223 16 6 1.3499 -2.9525 3.4865 17 8 0.2156 -2.5151 3.4607 18 6 1.8797 -3.5559 4.7237 19 6 2.4233 -4.8362 4.7034 20 6 2.9213 -5.4047 5.8663 21 9 3.4465 -6.6488 5.8302 22 6 2.8858 -4.7122 7.0610 23 6 2.3425 -3.4348 7.1093 24 7 2.1508 -2.5007 8.0973 25 1 2.3952 -2.6007 9.0307 26 7 1.5889 -1.4688 7.5691 27 7 1.3974 -1.6252 6.3064 28 6 1.8383 -2.8413 5.9377 29 1 -0.3635 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4424 -0.0005 34 1 1.6766 1.9563 -0.8901 35 1 1.6766 1.9563 0.8899 36 1 1.6053 -0.2617 2.1370 37 1 3.1263 -0.6443 1.2952 38 1 2.0698 -2.6550 0.3004 39 1 0.5488 -2.2724 1.1421 40 1 4.1360 -2.8923 1.7958 41 1 3.8180 -3.5790 3.4069 42 1 6.4506 -5.7475 2.0164 43 1 2.4578 -5.3905 3.7771 44 1 3.2765 -5.1665 7.9596 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277799015.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:20 Heat of formation + Delta-G solvation = 17.824988 kcal Electronic energy + Delta-G solvation = -29498.229643 eV Core-core repulsion = 25366.807215 eV Total energy + Delta-G solvation = -4131.422428 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 11.30 seconds Orbital eigenvalues (eV) -48.73787 -43.11100 -39.47104 -37.17577 -36.36974 -34.80104 -33.72543 -32.64557 -30.92955 -29.92126 -28.89455 -27.13225 -26.94981 -24.69706 -23.45800 -23.17745 -23.04384 -22.03888 -19.80067 -19.52102 -18.31028 -17.71162 -16.81240 -16.60016 -16.28860 -15.97150 -15.55945 -15.26107 -15.18651 -14.90710 -14.52207 -14.20571 -13.80514 -13.54897 -13.28511 -13.10864 -12.98180 -12.40547 -12.22060 -12.04226 -11.92708 -11.86355 -11.67926 -11.58304 -11.25637 -11.08993 -11.07009 -10.93405 -10.83267 -10.76487 -10.67910 -10.44899 -10.24364 -10.02350 -9.80874 -9.24129 -8.74186 -8.58942 -8.21277 -7.75840 -6.27015 -4.36211 0.41836 1.25680 2.34887 2.48578 3.12716 3.20019 3.25894 3.28640 3.58708 3.87156 3.99546 4.24905 4.44902 4.64732 4.99178 5.00790 5.03851 5.12531 5.15160 5.18949 5.21860 5.43787 5.63987 5.78808 5.82187 5.88680 5.95506 5.97561 6.04884 6.07836 6.15053 6.17709 6.31018 6.32951 6.39930 6.45300 6.66871 6.71111 6.76263 6.79181 6.88692 7.13726 7.47156 7.66514 7.95092 8.23451 8.36285 8.68174 8.88870 9.31799 10.78642 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.007324 B = 0.006140 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3822.289881 B = 4559.412402 C = 7679.381714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.145 4.145 4 C -0.129 4.129 5 C 0.120 3.880 6 N -0.585 5.585 7 C 0.230 3.770 8 C -0.547 4.547 9 H 0.065 0.935 10 C 0.072 3.928 11 N -0.882 5.882 12 Si 0.892 3.108 13 H -0.274 1.274 14 H -0.285 1.285 15 H -0.272 1.272 16 C 0.561 3.439 17 O -0.546 6.546 18 C -0.018 4.018 19 C -0.096 4.096 20 C 0.144 3.856 21 F -0.123 7.123 22 C -0.142 4.142 23 C 0.043 3.957 24 N -0.421 5.421 25 H 0.451 0.549 26 N -0.023 5.023 27 N -0.228 5.228 28 C 0.033 3.967 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.037 0.963 41 H 0.041 0.959 42 H 0.268 0.732 43 H 0.186 0.814 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.344 3.715 6.341 8.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.202 4.202 4 C -0.168 4.168 5 C -0.003 4.003 6 N -0.314 5.314 7 C 0.110 3.890 8 C -0.586 4.586 9 H 0.083 0.917 10 C -0.133 4.133 11 N -0.518 5.518 12 Si 0.719 3.281 13 H -0.200 1.200 14 H -0.210 1.210 15 H -0.197 1.197 16 C 0.347 3.653 17 O -0.425 6.425 18 C -0.026 4.026 19 C -0.117 4.117 20 C 0.121 3.879 21 F -0.101 7.101 22 C -0.165 4.165 23 C -0.077 4.077 24 N -0.149 5.149 25 H 0.297 0.703 26 N -0.005 5.005 27 N -0.104 5.104 28 C -0.092 4.092 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.077 0.923 43 H 0.203 0.797 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.267 5.293 6.475 9.389 hybrid contribution 1.077 -2.360 0.171 2.600 sum -3.190 2.934 6.647 7.935 Atomic orbital electron populations 1.21881 0.95338 1.02082 1.01170 1.21036 0.95841 0.95893 0.98422 1.21821 1.00875 0.96232 1.01288 1.22004 1.01148 0.95817 0.97802 1.21403 1.00068 0.91022 0.87772 1.48139 1.19197 1.52756 1.11324 1.19601 0.77598 0.92922 0.98848 1.21429 0.95034 0.99882 1.42218 0.91701 1.24931 0.95040 0.98501 0.94844 1.69908 0.99149 1.37638 1.45140 0.86641 0.77528 0.83883 0.80080 1.19979 1.21036 1.19734 1.17785 0.85284 0.79186 0.83021 1.90744 1.18266 1.49180 1.84303 1.18827 0.98631 0.93379 0.91747 1.22136 0.94603 0.95076 0.99908 1.17131 0.96640 0.80898 0.93226 1.91555 1.83689 1.37785 1.97062 1.19733 1.05771 0.92355 0.98635 1.19096 1.05399 0.93986 0.89241 1.44698 1.47060 1.11323 1.11808 0.70287 1.78006 1.09340 1.08709 1.04435 1.75357 1.18071 1.15101 1.01875 1.19497 1.03427 0.92860 0.93465 0.92240 0.92683 0.93346 0.91193 0.92814 0.93105 0.92842 0.91787 0.91813 0.90146 0.90502 0.94492 0.94074 0.92258 0.79676 0.83841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 8.95 37.16 0.33 -1.57 16 2 C -0.09 -1.24 2.92 -90.62 -0.26 -1.51 16 3 C -0.14 -1.72 9.19 37.16 0.34 -1.38 16 4 C -0.13 -2.10 5.01 -26.73 -0.13 -2.24 16 5 C 0.12 2.20 5.22 -4.05 -0.02 2.18 16 6 N -0.58 -12.20 2.46 -176.31 -0.43 -12.64 16 7 C 0.23 5.24 4.68 -5.19 -0.02 5.21 16 8 C -0.55 -13.16 7.03 -34.44 -0.24 -13.41 16 9 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 10 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 11 N -0.88 -22.97 13.29 55.43 0.74 -22.23 16 12 Si 0.89 19.46 29.54 -169.99 -5.02 14.44 16 13 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 14 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 15 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 16 C 0.56 12.11 7.18 -12.49 -0.09 12.02 16 17 O -0.55 -12.78 16.63 5.28 0.09 -12.69 16 18 C -0.02 -0.36 4.76 -104.78 -0.50 -0.86 16 19 C -0.10 -1.81 7.63 -39.09 -0.30 -2.11 16 20 C 0.14 2.36 7.27 -39.45 -0.29 2.08 16 21 F -0.12 -2.04 17.25 2.25 0.04 -2.01 16 22 C -0.14 -1.91 10.03 -39.37 -0.39 -2.31 16 23 C 0.04 0.64 7.40 -84.24 -0.62 0.02 16 24 N -0.42 -5.10 7.08 32.31 0.23 -4.87 16 25 H 0.45 3.12 8.96 -190.23 -1.71 1.42 16 26 N -0.02 -0.36 13.29 60.35 0.80 0.44 16 27 N -0.23 -4.36 12.41 32.21 0.40 -3.96 16 28 C 0.03 0.62 7.08 -84.75 -0.60 0.03 16 29 H 0.06 0.80 6.56 -51.93 -0.34 0.46 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.08 1.45 8.07 -51.93 -0.42 1.03 16 39 H 0.08 1.41 5.78 -51.92 -0.30 1.11 16 40 H 0.04 0.89 8.11 -51.93 -0.42 0.47 16 41 H 0.04 0.98 5.64 -51.93 -0.29 0.69 16 42 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 43 H 0.19 3.83 5.36 -52.48 -0.28 3.55 16 44 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 370.87 15.07 5.59 5.59 Total: -1.00 -29.38 370.87 -7.58 -36.97 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -7.11 Total: 3.13 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -2.90 Total: -2.17 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: 1.73 Total: -43.26 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.09 Total: -12.69 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.38 -7.58 -36.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277799015.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.792 kcal (2) G-P(sol) polarization free energy of solvation -29.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.30 seconds