Wall clock time and date at job start Tue Mar 31 2020 17:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47208 * 2 1 4 4 C 1.53000 * 109.47095 * 120.00060 * 2 1 3 5 5 C 1.52995 * 109.47655 * 64.99819 * 4 2 1 6 6 N 1.46494 * 109.47461 * 180.02562 * 5 4 2 7 7 C 1.46501 * 120.00191 * 269.99696 * 6 5 4 8 8 C 1.50700 * 109.47392 * 275.82433 * 7 6 5 9 9 H 1.08000 * 119.99823 * 359.97438 * 8 7 6 10 10 C 1.37871 * 119.99822 * 179.97438 * 8 7 6 11 11 N 1.31510 * 120.00455 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99763 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47263 * 59.99501 * 12 10 8 14 14 H 1.48503 * 109.47309 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47076 * 299.99488 * 12 10 8 16 16 C 1.34776 * 120.00344 * 89.99869 * 6 5 4 17 17 O 1.21601 * 119.99733 * 4.70230 * 16 6 5 18 18 C 1.47490 * 120.00233 * 184.70043 * 16 6 5 19 19 C 1.39112 * 120.30747 * 306.33085 * 18 16 6 20 20 C 1.38690 * 120.35484 * 180.02562 * 19 18 16 21 21 F 1.35093 * 119.65130 * 180.02562 * 20 19 18 22 22 C 1.38139 * 120.69624 * 0.02562 * 20 19 18 23 23 C 1.38897 * 120.07533 * 0.27619 * 22 20 19 24 24 N 1.37316 * 134.85095 * 179.70359 * 23 22 20 25 25 H 0.97002 * 125.94603 * 359.97438 * 24 23 22 26 26 N 1.28820 * 108.10671 * 180.02562 * 24 23 22 27 27 N 1.28675 * 111.71339 * 359.41194 * 26 24 23 28 28 C 1.34506 * 109.27127 * 0.69417 * 27 26 24 29 29 H 1.09004 * 109.47746 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47651 * 300.00279 * 1 2 3 31 31 H 1.09006 * 109.47165 * 60.00491 * 1 2 3 32 32 H 1.08997 * 109.47012 * 239.99352 * 2 1 3 33 33 H 1.09001 * 109.46967 * 180.02562 * 3 2 1 34 34 H 1.09006 * 109.46657 * 299.99820 * 3 2 1 35 35 H 1.08992 * 109.47219 * 59.99638 * 3 2 1 36 36 H 1.09006 * 109.46916 * 304.99670 * 4 2 1 37 37 H 1.09001 * 109.47342 * 185.00443 * 4 2 1 38 38 H 1.08998 * 109.47219 * 59.99675 * 5 4 2 39 39 H 1.09010 * 109.47090 * 300.00396 * 5 4 2 40 40 H 1.09005 * 109.46633 * 35.81962 * 7 6 5 41 41 H 1.08996 * 109.47100 * 155.81831 * 7 6 5 42 42 H 0.97003 * 120.00559 * 180.02562 * 11 10 8 43 43 H 1.08003 * 119.82512 * 0.02562 * 19 18 16 44 44 H 1.07998 * 119.96541 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6352 -2.1954 1.1881 6 7 2.1230 -2.8859 2.3845 7 6 3.4512 -3.5040 2.3832 8 6 3.3637 -4.8816 1.7787 9 1 2.4136 -5.2592 1.4306 10 6 4.4965 -5.6599 1.6699 11 7 5.6535 -5.2001 2.0933 12 14 4.3878 -7.3679 0.9211 13 1 3.8870 -7.2662 -0.4732 14 1 5.7344 -7.9939 0.9186 15 1 3.4556 -8.2012 1.7223 16 6 1.3499 -2.9525 3.4865 17 8 0.2156 -2.5151 3.4607 18 6 1.8797 -3.5559 4.7237 19 6 2.4233 -4.8362 4.7034 20 6 2.9213 -5.4047 5.8663 21 9 3.4465 -6.6488 5.8302 22 6 2.8858 -4.7122 7.0610 23 6 2.3425 -3.4348 7.1093 24 7 2.1508 -2.5007 8.0973 25 1 2.3952 -2.6007 9.0307 26 7 1.5889 -1.4688 7.5691 27 7 1.3974 -1.6252 6.3064 28 6 1.8383 -2.8413 5.9377 29 1 -0.3635 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4424 -0.0005 34 1 1.6766 1.9563 -0.8901 35 1 1.6766 1.9563 0.8899 36 1 1.6053 -0.2617 2.1370 37 1 3.1263 -0.6443 1.2952 38 1 2.0698 -2.6550 0.3004 39 1 0.5488 -2.2724 1.1421 40 1 4.1360 -2.8923 1.7958 41 1 3.8180 -3.5790 3.4069 42 1 6.4506 -5.7475 2.0164 43 1 2.4578 -5.3905 3.7771 44 1 3.2765 -5.1665 7.9596 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277799015.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:09 Heat of formation + Delta-G solvation = 0.480079 kcal Electronic energy + Delta-G solvation = -29498.981775 eV Core-core repulsion = 25366.807215 eV Total energy + Delta-G solvation = -4132.174559 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 15.09 seconds Orbital eigenvalues (eV) -50.01525 -44.38256 -41.08644 -38.50824 -37.76039 -36.42416 -35.00122 -34.49427 -32.28520 -31.23081 -30.36204 -28.89680 -27.99236 -26.06320 -25.00119 -24.79782 -24.35716 -23.40320 -21.08252 -20.83789 -19.64109 -19.18103 -18.52939 -18.20587 -17.64502 -17.36331 -17.06145 -16.66136 -16.51821 -16.28413 -16.15744 -15.63047 -15.15861 -14.80587 -14.60252 -14.53841 -14.40484 -14.11536 -13.77385 -13.47076 -13.20418 -13.15469 -13.05779 -12.91856 -12.75919 -12.71719 -12.52770 -12.33420 -12.23906 -12.14329 -12.01244 -11.95142 -11.57472 -11.52407 -11.41146 -10.90577 -10.58769 -10.01786 -9.55863 -9.43324 -8.18877 -6.33426 -0.89003 -0.06351 1.04825 1.38909 1.45762 1.47194 1.53176 1.59569 2.08601 2.34762 2.46751 2.77764 3.09297 3.10976 3.28746 3.70891 3.77836 3.84754 3.96255 3.97425 4.08591 4.14818 4.29614 4.45313 4.57491 4.62210 4.70043 4.77306 4.81733 4.84728 4.90171 4.94234 4.98507 5.04270 5.13065 5.15977 5.20495 5.33020 5.46642 5.48291 5.52241 5.67457 5.80690 5.89417 6.04247 6.48554 6.78055 7.08722 7.17768 7.38430 8.86399 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.007324 B = 0.006140 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3822.289881 B = 4559.412402 C = 7679.381714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 C -0.141 4.141 4 C -0.118 4.118 5 C 0.117 3.883 6 N -0.588 5.588 7 C 0.248 3.752 8 C -0.546 4.546 9 H 0.059 0.941 10 C 0.035 3.965 11 N -0.910 5.910 12 Si 0.945 3.055 13 H -0.272 1.272 14 H -0.283 1.283 15 H -0.267 1.267 16 C 0.557 3.443 17 O -0.573 6.573 18 C -0.052 4.052 19 C -0.096 4.096 20 C 0.124 3.876 21 F -0.125 7.125 22 C -0.094 4.094 23 C 0.048 3.952 24 N -0.380 5.380 25 H 0.477 0.523 26 N -0.013 5.013 27 N -0.277 5.277 28 C 0.015 3.985 29 H 0.048 0.952 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.044 0.956 37 H 0.055 0.945 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.018 0.982 41 H 0.031 0.969 42 H 0.269 0.731 43 H 0.162 0.838 44 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.946 3.258 7.862 9.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 C -0.199 4.199 4 C -0.157 4.157 5 C -0.005 4.005 6 N -0.316 5.316 7 C 0.128 3.872 8 C -0.585 4.585 9 H 0.077 0.923 10 C -0.167 4.167 11 N -0.548 5.548 12 Si 0.770 3.230 13 H -0.198 1.198 14 H -0.208 1.208 15 H -0.192 1.192 16 C 0.345 3.655 17 O -0.455 6.455 18 C -0.060 4.060 19 C -0.118 4.118 20 C 0.101 3.899 21 F -0.103 7.103 22 C -0.117 4.117 23 C -0.074 4.074 24 N -0.113 5.113 25 H 0.329 0.671 26 N 0.005 4.995 27 N -0.153 5.153 28 C -0.111 4.111 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.036 0.964 41 H 0.049 0.951 42 H 0.078 0.922 43 H 0.179 0.821 44 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -3.871 4.848 8.019 10.138 hybrid contribution 0.943 -2.183 -0.162 2.384 sum -2.928 2.664 7.856 8.797 Atomic orbital electron populations 1.21851 0.94822 1.01625 1.01867 1.21041 0.96242 0.96711 0.96872 1.21792 1.00907 0.95019 1.02152 1.21896 1.00439 0.94571 0.98753 1.21543 0.99827 0.92147 0.86967 1.48185 1.18532 1.52785 1.12137 1.19245 0.78060 0.92252 0.97666 1.21508 0.94764 1.00356 1.41829 0.92318 1.25522 0.94677 1.01384 0.95142 1.69996 0.99662 1.38822 1.46328 0.85797 0.77507 0.80310 0.79362 1.19760 1.20796 1.19219 1.18143 0.84929 0.78703 0.83693 1.90699 1.19289 1.50633 1.84875 1.18631 1.01483 0.94254 0.91611 1.21888 0.94944 0.94693 1.00280 1.17092 0.97986 0.81334 0.93495 1.91549 1.83842 1.37832 1.97087 1.20102 1.01737 0.90714 0.99127 1.19093 1.05224 0.94558 0.88499 1.44693 1.44494 1.09514 1.12635 0.67054 1.77911 1.08654 1.09361 1.03604 1.75366 1.20574 1.16154 1.03202 1.19632 1.03926 0.93260 0.94329 0.93298 0.93623 0.90955 0.90356 0.92780 0.90991 0.93214 0.93698 0.92637 0.90044 0.90787 0.96357 0.95102 0.92216 0.82103 0.78497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 8.95 71.98 0.64 -3.04 16 2 C -0.09 -2.39 2.92 -10.80 -0.03 -2.42 16 3 C -0.14 -3.23 9.19 71.98 0.66 -2.57 16 4 C -0.12 -4.01 5.01 30.59 0.15 -3.86 16 5 C 0.12 4.51 5.22 86.38 0.45 4.96 16 6 N -0.59 -25.85 2.46 -829.97 -2.04 -27.89 16 7 C 0.25 11.82 4.68 85.63 0.40 12.22 16 8 C -0.55 -27.02 7.03 25.60 0.18 -26.84 16 9 H 0.06 2.93 7.81 -2.91 -0.02 2.91 16 10 C 0.03 1.74 5.46 84.65 0.46 2.20 16 11 N -0.91 -47.99 13.29 21.44 0.28 -47.70 16 12 Si 0.95 39.93 29.54 68.60 2.03 41.96 16 13 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 14 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 15 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 16 C 0.56 25.35 7.18 86.68 0.62 25.97 16 17 O -0.57 -28.29 16.63 -4.03 -0.07 -28.35 16 18 C -0.05 -2.15 4.76 -19.97 -0.10 -2.24 16 19 C -0.10 -3.71 7.63 22.59 0.17 -3.54 16 20 C 0.12 3.89 7.27 22.35 0.16 4.06 16 21 F -0.12 -3.96 17.25 44.97 0.78 -3.19 16 22 C -0.09 -2.20 10.03 22.40 0.22 -1.97 16 23 C 0.05 1.28 7.40 39.04 0.29 1.57 16 24 N -0.38 -7.90 7.08 -51.70 -0.37 -8.26 16 25 H 0.48 4.32 8.96 -219.81 -1.97 2.35 16 26 N -0.01 -0.39 13.29 37.02 0.49 0.10 16 27 N -0.28 -10.62 12.41 -52.01 -0.65 -11.27 16 28 C 0.01 0.56 7.08 39.99 0.28 0.84 16 29 H 0.05 1.33 6.56 -2.38 -0.02 1.32 16 30 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.08 1.97 8.14 -2.39 -0.02 1.96 16 33 H 0.05 1.22 8.14 -2.39 -0.02 1.21 16 34 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.05 1.16 8.14 -2.39 -0.02 1.15 16 36 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 37 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.08 3.06 8.07 -2.39 -0.02 3.04 16 39 H 0.07 2.88 5.78 -2.38 -0.01 2.86 16 40 H 0.02 0.93 8.11 -2.38 -0.02 0.91 16 41 H 0.03 1.54 5.64 -2.39 -0.01 1.53 16 42 H 0.27 13.53 8.31 -92.71 -0.77 12.76 16 43 H 0.16 6.96 5.36 -2.91 -0.02 6.95 16 44 H 0.20 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -66.42 370.87 4.12 -62.30 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -0.92 Total: 16.98 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: 4.58 Total: 5.32 kcal Atomic # 7 Polarization: -92.75 SS G_CDS: -2.27 Total: -95.02 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.07 Total: -28.35 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.78 Total: -3.19 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 2.03 Total: 41.96 kcal Total: -66.42 4.12 -62.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277799015.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.783 kcal (2) G-P(sol) polarization free energy of solvation -66.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 15.09 seconds