Wall clock time and date at job start Tue Mar 31 2020 17:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46901 * 109.46795 * 129.43879 * 3 2 1 5 5 C 1.46900 * 111.00297 * 66.04399 * 4 3 2 6 6 C 1.47198 * 109.46879 * 286.40615 * 5 4 3 7 7 C 3.06793 * 71.46382 * 155.21524 * 2 1 3 8 8 C 1.46902 * 110.99687 * 189.99781 * 4 3 2 9 9 C 1.50699 * 109.47014 * 163.83825 * 8 4 3 10 10 C 1.35075 * 126.07447 * 105.56568 * 9 8 4 11 11 N 1.35048 * 107.98508 * 180.02562 * 10 9 8 12 12 C 1.46505 * 125.92818 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47126 * 124.97937 * 12 11 10 14 14 H 1.08001 * 119.99981 * 0.02562 * 13 12 11 15 15 C 1.37869 * 120.00302 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00600 * 180.02562 * 15 13 12 17 17 Si 1.86808 * 119.99904 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47053 * 89.99742 * 17 15 13 19 19 H 1.48503 * 109.47253 * 210.00270 * 17 15 13 20 20 H 1.48499 * 109.47020 * 330.00118 * 17 15 13 21 21 N 1.40067 * 108.14584 * 0.02562 * 11 10 9 22 22 C 1.31657 * 108.10026 * 359.97438 * 21 11 10 23 23 C 1.48369 * 126.04027 * 179.74064 * 22 21 11 24 24 C 1.39766 * 120.90252 * 136.61094 * 23 22 21 25 25 C 1.37964 * 119.01854 * 179.75008 * 24 23 22 26 26 N 1.31938 * 120.87927 * 0.53982 * 25 24 23 27 27 C 1.31934 * 122.00804 * 359.73297 * 26 25 24 28 28 C 1.37969 * 120.87572 * 359.97438 * 27 26 25 29 29 H 4.40880 * 5.52306 * 180.02562 * 4 1 2 30 30 H 1.08996 * 109.47349 * 9.43628 * 3 2 1 31 31 H 1.09004 * 109.46714 * 249.43218 * 3 2 1 32 32 H 1.09002 * 109.47182 * 46.40627 * 5 4 3 33 33 H 1.08998 * 109.46886 * 166.40856 * 5 4 3 34 34 H 3.69842 * 57.22370 * 153.53572 * 2 1 3 35 35 H 1.08994 * 109.47410 * 43.83910 * 8 4 3 36 36 H 1.09003 * 109.47113 * 283.83825 * 8 4 3 37 37 H 1.08002 * 126.00667 * 0.04432 * 10 9 8 38 38 H 1.08997 * 109.47499 * 244.97672 * 12 11 10 39 39 H 1.08994 * 109.47120 * 4.98084 * 12 11 10 40 40 H 0.96998 * 120.00364 * 179.97438 * 16 15 13 41 41 H 1.07996 * 120.49428 * 0.02562 * 24 23 22 42 42 H 1.07999 * 119.56222 * 180.26788 * 25 24 23 43 43 H 1.07994 * 119.56322 * 179.97438 * 27 26 25 44 44 H 1.07997 * 120.48705 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1352 0.8807 -1.0697 5 6 2.7850 2.2817 -0.8002 6 6 1.3454 2.4812 -1.0335 7 6 0.1987 2.6408 -1.2194 8 6 4.5841 0.7268 -1.2565 9 6 4.9851 1.3184 -2.5833 10 6 5.6343 2.4883 -2.7688 11 7 5.8073 2.6632 -4.0967 12 6 6.4671 3.8052 -4.7346 13 6 7.5773 3.3105 -5.6256 14 1 7.7716 2.2514 -5.7088 15 6 8.3448 4.2099 -6.3346 16 7 9.3133 3.7782 -7.1127 17 14 8.0082 6.0418 -6.1914 18 1 8.8152 6.6080 -5.0808 19 1 8.3765 6.7138 -7.4635 20 1 6.5654 6.2599 -5.9160 21 7 5.2455 1.5639 -4.7583 22 6 4.7487 0.7502 -3.8503 23 6 4.0562 -0.5350 -4.1152 24 6 4.3315 -1.6702 -3.3477 25 6 3.6610 -2.8438 -3.6244 26 7 2.7794 -2.9052 -4.6040 27 6 2.4948 -1.8587 -5.3553 28 6 3.1151 -0.6448 -5.1427 29 1 -1.0502 0.0000 0.0003 30 1 3.0098 -1.0129 -0.1685 31 1 3.0091 0.3619 0.9622 32 1 3.0221 2.5226 0.2361 33 1 3.3542 2.9325 -1.4639 34 1 -0.8282 2.7837 -1.3858 35 1 4.8424 -0.3319 -1.2380 36 1 5.1109 1.2434 -0.4542 37 1 5.9583 3.1648 -1.9917 38 1 5.7412 4.3575 -5.3312 39 1 6.8811 4.4603 -3.9681 40 1 9.8531 4.4110 -7.6118 41 1 5.0550 -1.6281 -2.5470 42 1 3.8637 -3.7251 -3.0340 43 1 1.7666 -1.9534 -6.1472 44 1 2.8770 0.2080 -5.7612 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278992147.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:34 Heat of formation + Delta-G solvation = 244.356401 kcal Electronic energy + Delta-G solvation = -27557.077194 eV Core-core repulsion = 23866.247130 eV Total energy + Delta-G solvation = -3690.830064 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.149 amu Computer time = 31.90 seconds Orbital eigenvalues (eV) -40.91648 -39.54816 -38.16347 -34.32211 -33.24427 -32.88158 -32.80769 -31.23499 -31.09765 -30.27297 -28.16639 -27.72407 -26.18908 -24.16910 -23.31905 -22.85266 -21.74893 -20.19194 -19.50223 -18.27655 -18.20130 -17.16856 -16.67085 -16.07572 -15.88278 -15.77635 -15.56590 -15.22862 -14.97075 -14.46964 -14.07213 -13.68612 -13.57912 -13.54412 -13.37777 -13.24904 -12.78374 -12.64585 -12.59327 -12.42285 -12.25391 -11.84720 -11.34833 -11.23021 -11.10514 -10.83142 -10.43809 -10.38989 -10.17854 -10.14340 -9.83549 -9.55605 -9.49059 -9.33057 -8.95962 -8.84622 -8.56189 -8.47966 -7.84304 -6.30945 -4.34597 1.28235 1.36306 2.30404 2.57693 2.80152 2.97328 3.06967 3.11309 3.15127 3.15651 3.16442 3.27606 4.07596 4.14639 4.15510 4.38900 4.47593 4.60686 4.68821 4.94483 4.98426 5.01788 5.09646 5.20403 5.24778 5.31061 5.33516 5.36906 5.44546 5.53401 5.61846 5.83401 5.86196 5.89787 5.98793 6.01094 6.08986 6.28615 6.31048 6.47068 6.66113 6.83956 6.87226 6.90178 7.02028 7.22248 7.58774 7.64013 7.73257 8.13898 8.20852 8.31811 8.77791 9.22977 10.81546 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.010938 B = 0.003657 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.301375 B = 7654.976787 C = 9232.911929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.172 4.172 3 C 0.163 3.837 4 N -0.525 5.525 5 C 0.162 3.838 6 C -0.163 4.163 7 C -0.208 4.208 8 C 0.140 3.860 9 C -0.236 4.236 10 C 0.054 3.946 11 N -0.316 5.316 12 C 0.229 3.771 13 C -0.538 4.538 14 H 0.086 0.914 15 C 0.078 3.922 16 N -0.884 5.884 17 Si 0.872 3.128 18 H -0.271 1.271 19 H -0.279 1.279 20 H -0.264 1.264 21 N -0.250 5.250 22 C 0.090 3.910 23 C 0.070 3.930 24 C -0.153 4.153 25 C 0.095 3.905 26 N -0.493 5.493 27 C 0.097 3.903 28 C -0.148 4.148 29 H 0.211 0.789 30 H 0.098 0.902 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.100 0.900 34 H 0.211 0.789 35 H 0.085 0.915 36 H 0.046 0.954 37 H 0.167 0.833 38 H 0.044 0.956 39 H 0.048 0.952 40 H 0.269 0.731 41 H 0.133 0.867 42 H 0.152 0.848 43 H 0.152 0.848 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.995 -6.021 15.506 21.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.173 4.173 3 C 0.036 3.964 4 N -0.249 5.249 5 C 0.036 3.964 6 C -0.164 4.164 7 C -0.226 4.226 8 C 0.013 3.987 9 C -0.249 4.249 10 C -0.096 4.096 11 N -0.095 5.095 12 C 0.111 3.889 13 C -0.576 4.576 14 H 0.104 0.896 15 C -0.126 4.126 16 N -0.521 5.521 17 Si 0.698 3.302 18 H -0.197 1.197 19 H -0.204 1.204 20 H -0.189 1.189 21 N -0.074 5.074 22 C -0.073 4.073 23 C 0.060 3.940 24 C -0.174 4.174 25 C -0.062 4.062 26 N -0.203 5.203 27 C -0.060 4.060 28 C -0.169 4.169 29 H 0.228 0.772 30 H 0.116 0.884 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.118 0.882 34 H 0.228 0.772 35 H 0.103 0.897 36 H 0.064 0.936 37 H 0.184 0.816 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.151 0.849 42 H 0.169 0.831 43 H 0.170 0.830 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.138 -6.503 13.428 20.555 hybrid contribution 0.356 2.176 1.573 2.709 sum -13.782 -4.327 15.001 20.826 Atomic orbital electron populations 1.24685 0.95725 1.00643 1.00665 1.22670 0.94121 1.00355 1.00110 1.19046 0.85541 0.98572 0.93214 1.61832 1.14863 1.05065 1.43161 1.19012 0.87076 0.90385 0.99949 1.22667 0.94340 0.99784 0.99575 1.24596 0.95927 1.00505 1.01600 1.20295 0.84877 1.00745 0.92819 1.19471 1.12658 0.98503 0.94262 1.22247 1.01097 0.98385 0.87825 1.48961 1.40456 1.16660 1.03472 1.20106 0.93445 0.80983 0.94398 1.21059 1.13609 0.96692 1.26236 0.89574 1.24818 0.94519 0.98819 0.94431 1.69864 1.19477 1.35146 1.27623 0.86927 0.79296 0.85433 0.78565 1.19679 1.20407 1.18903 1.77773 1.14117 0.95509 1.19982 1.20257 1.00849 0.94859 0.91365 1.18031 0.92663 0.90044 0.93288 1.22051 1.01432 0.92952 1.01003 1.22526 0.92316 0.96910 0.94436 1.67576 1.15394 1.31701 1.05594 1.22566 0.97816 0.88166 0.97421 1.22207 0.97072 0.99573 0.98079 0.77160 0.88410 0.92555 0.92565 0.88167 0.77236 0.89724 0.93600 0.81560 0.93811 0.93390 0.92056 0.84914 0.83064 0.83021 0.84813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.12 17.10 29.55 0.51 -1.61 16 2 C -0.17 -1.99 11.16 -37.12 -0.41 -2.40 16 3 C 0.16 1.60 5.44 -6.61 -0.04 1.57 16 4 N -0.53 -6.05 4.45 -243.11 -1.08 -7.14 16 5 C 0.16 1.88 5.30 -6.61 -0.04 1.84 16 6 C -0.16 -2.11 11.11 -37.14 -0.41 -2.53 16 7 C -0.21 -2.45 17.25 29.54 0.51 -1.94 16 8 C 0.14 1.54 4.98 -4.98 -0.02 1.52 16 9 C -0.24 -3.57 4.84 -104.76 -0.51 -4.08 16 10 C 0.05 0.88 10.67 -17.26 -0.18 0.69 16 11 N -0.32 -6.53 3.67 -62.58 -0.23 -6.76 16 12 C 0.23 5.13 5.33 -5.19 -0.03 5.10 16 13 C -0.54 -14.65 9.79 -34.44 -0.34 -14.99 16 14 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 15 C 0.08 2.14 5.47 -17.82 -0.10 2.05 16 16 N -0.88 -25.99 13.96 55.43 0.77 -25.22 16 17 Si 0.87 19.55 27.47 -169.99 -4.67 14.88 16 18 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.26 -5.61 6.54 56.52 0.37 -5.24 16 21 N -0.25 -5.41 12.44 33.42 0.42 -4.99 16 22 C 0.09 1.62 6.72 -82.78 -0.56 1.07 16 23 C 0.07 1.11 5.76 -104.58 -0.60 0.51 16 24 C -0.15 -2.03 9.02 -39.11 -0.35 -2.38 16 25 C 0.09 1.19 11.17 -17.61 -0.20 1.00 16 26 N -0.49 -7.04 10.35 -13.34 -0.14 -7.18 16 27 C 0.10 1.34 11.17 -17.61 -0.20 1.14 16 28 C -0.15 -2.28 9.89 -39.11 -0.39 -2.67 16 29 H 0.21 1.59 7.80 -54.08 -0.42 1.16 16 30 H 0.10 0.84 7.86 -51.93 -0.41 0.43 16 31 H 0.06 0.46 7.98 -51.93 -0.41 0.04 16 32 H 0.06 0.54 7.91 -51.93 -0.41 0.13 16 33 H 0.10 1.24 6.65 -51.93 -0.35 0.89 16 34 H 0.21 1.78 7.80 -54.09 -0.42 1.36 16 35 H 0.08 0.83 5.55 -51.93 -0.29 0.55 16 36 H 0.05 0.42 8.03 -51.93 -0.42 0.00 16 37 H 0.17 2.05 8.06 -52.49 -0.42 1.63 16 38 H 0.04 0.99 7.20 -51.93 -0.37 0.62 16 39 H 0.05 0.96 7.49 -51.93 -0.39 0.57 16 40 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 41 H 0.13 1.47 6.37 -52.49 -0.33 1.14 16 42 H 0.15 1.42 8.06 -52.49 -0.42 0.99 16 43 H 0.15 1.68 8.06 -52.49 -0.42 1.25 16 44 H 0.13 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 384.49 15.07 5.79 5.79 Total: -1.00 -33.67 384.49 -7.99 -41.67 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -5.51 Total: 5.06 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: -3.35 Total: -16.11 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: -0.26 Total: -51.29 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.67 Total: 14.88 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.67 -7.99 -41.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278992147.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 286.024 kcal (2) G-P(sol) polarization free energy of solvation -33.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 252.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 244.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 31.90 seconds