Wall clock time and date at job start Tue Mar 31 2020 17:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46901 * 109.46795 * 129.43879 * 3 2 1 5 5 C 1.46900 * 111.00297 * 66.04399 * 4 3 2 6 6 C 1.47198 * 109.46879 * 286.40615 * 5 4 3 7 7 C 3.06793 * 71.46382 * 155.21524 * 2 1 3 8 8 C 1.46902 * 110.99687 * 189.99781 * 4 3 2 9 9 C 1.50699 * 109.47014 * 163.83825 * 8 4 3 10 10 C 1.35075 * 126.07447 * 105.56568 * 9 8 4 11 11 N 1.35048 * 107.98508 * 180.02562 * 10 9 8 12 12 C 1.46505 * 125.92818 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47126 * 124.97937 * 12 11 10 14 14 H 1.08001 * 119.99981 * 0.02562 * 13 12 11 15 15 C 1.37869 * 120.00302 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00600 * 180.02562 * 15 13 12 17 17 Si 1.86808 * 119.99904 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47053 * 89.99742 * 17 15 13 19 19 H 1.48503 * 109.47253 * 210.00270 * 17 15 13 20 20 H 1.48499 * 109.47020 * 330.00118 * 17 15 13 21 21 N 1.40067 * 108.14584 * 0.02562 * 11 10 9 22 22 C 1.31657 * 108.10026 * 359.97438 * 21 11 10 23 23 C 1.48369 * 126.04027 * 179.74064 * 22 21 11 24 24 C 1.39766 * 120.90252 * 136.61094 * 23 22 21 25 25 C 1.37964 * 119.01854 * 179.75008 * 24 23 22 26 26 N 1.31938 * 120.87927 * 0.53982 * 25 24 23 27 27 C 1.31934 * 122.00804 * 359.73297 * 26 25 24 28 28 C 1.37969 * 120.87572 * 359.97438 * 27 26 25 29 29 H 4.40880 * 5.52306 * 180.02562 * 4 1 2 30 30 H 1.08996 * 109.47349 * 9.43628 * 3 2 1 31 31 H 1.09004 * 109.46714 * 249.43218 * 3 2 1 32 32 H 1.09002 * 109.47182 * 46.40627 * 5 4 3 33 33 H 1.08998 * 109.46886 * 166.40856 * 5 4 3 34 34 H 3.69842 * 57.22370 * 153.53572 * 2 1 3 35 35 H 1.08994 * 109.47410 * 43.83910 * 8 4 3 36 36 H 1.09003 * 109.47113 * 283.83825 * 8 4 3 37 37 H 1.08002 * 126.00667 * 0.04432 * 10 9 8 38 38 H 1.08997 * 109.47499 * 244.97672 * 12 11 10 39 39 H 1.08994 * 109.47120 * 4.98084 * 12 11 10 40 40 H 0.96998 * 120.00364 * 179.97438 * 16 15 13 41 41 H 1.07996 * 120.49428 * 0.02562 * 24 23 22 42 42 H 1.07999 * 119.56222 * 180.26788 * 25 24 23 43 43 H 1.07994 * 119.56322 * 179.97438 * 27 26 25 44 44 H 1.07997 * 120.48705 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1352 0.8807 -1.0697 5 6 2.7850 2.2817 -0.8002 6 6 1.3454 2.4812 -1.0335 7 6 0.1987 2.6408 -1.2194 8 6 4.5841 0.7268 -1.2565 9 6 4.9851 1.3184 -2.5833 10 6 5.6343 2.4883 -2.7688 11 7 5.8073 2.6632 -4.0967 12 6 6.4671 3.8052 -4.7346 13 6 7.5773 3.3105 -5.6256 14 1 7.7716 2.2514 -5.7088 15 6 8.3448 4.2099 -6.3346 16 7 9.3133 3.7782 -7.1127 17 14 8.0082 6.0418 -6.1914 18 1 8.8152 6.6080 -5.0808 19 1 8.3765 6.7138 -7.4635 20 1 6.5654 6.2599 -5.9160 21 7 5.2455 1.5639 -4.7583 22 6 4.7487 0.7502 -3.8503 23 6 4.0562 -0.5350 -4.1152 24 6 4.3315 -1.6702 -3.3477 25 6 3.6610 -2.8438 -3.6244 26 7 2.7794 -2.9052 -4.6040 27 6 2.4948 -1.8587 -5.3553 28 6 3.1151 -0.6448 -5.1427 29 1 -1.0502 0.0000 0.0003 30 1 3.0098 -1.0129 -0.1685 31 1 3.0091 0.3619 0.9622 32 1 3.0221 2.5226 0.2361 33 1 3.3542 2.9325 -1.4639 34 1 -0.8282 2.7837 -1.3858 35 1 4.8424 -0.3319 -1.2380 36 1 5.1109 1.2434 -0.4542 37 1 5.9583 3.1648 -1.9917 38 1 5.7412 4.3575 -5.3312 39 1 6.8811 4.4603 -3.9681 40 1 9.8531 4.4110 -7.6118 41 1 5.0550 -1.6281 -2.5470 42 1 3.8637 -3.7251 -3.0340 43 1 1.7666 -1.9534 -6.1472 44 1 2.8770 0.2080 -5.7612 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278992147.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:55 Heat of formation + Delta-G solvation = 222.439542 kcal Electronic energy + Delta-G solvation = -27558.027580 eV Core-core repulsion = 23866.247130 eV Total energy + Delta-G solvation = -3691.780450 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.149 amu Computer time = 29.99 seconds Orbital eigenvalues (eV) -42.21481 -40.66502 -39.01082 -35.87758 -34.58876 -34.10133 -33.66341 -32.70882 -32.19153 -31.45612 -29.69891 -28.52866 -27.32153 -25.62085 -24.38032 -24.02633 -23.05651 -21.49715 -20.75991 -19.15006 -19.09569 -18.97442 -17.94564 -17.21068 -17.04563 -16.79702 -16.61125 -16.25534 -16.09377 -15.83868 -15.50453 -14.87414 -14.71921 -14.60634 -14.42536 -14.34438 -14.32262 -13.80612 -13.71030 -13.61057 -13.36258 -13.04953 -12.77302 -12.56036 -12.37960 -12.10223 -11.99968 -11.83708 -11.53398 -11.22404 -10.97787 -10.90465 -10.87603 -10.43138 -10.38762 -10.02658 -9.92713 -9.29610 -9.15320 -8.40178 -6.50861 0.11062 0.28911 1.14399 1.33002 1.36030 1.45374 1.53666 1.80797 1.94720 1.99561 2.12180 2.25769 2.29488 2.91986 2.99243 3.30870 3.49084 3.64267 3.66635 3.68469 3.87027 4.04808 4.15725 4.20496 4.25077 4.29974 4.42597 4.45651 4.51561 4.62124 4.65408 4.68967 4.74539 4.84558 4.91403 4.98904 5.02987 5.12874 5.18918 5.21062 5.23654 5.46929 5.73771 5.80637 5.95313 6.05767 6.13566 6.38050 6.55284 6.84362 6.87355 6.92776 7.06756 7.12370 8.76946 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.010938 B = 0.003657 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.301375 B = 7654.976787 C = 9232.911929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.199 4.199 3 C 0.162 3.838 4 N -0.540 5.540 5 C 0.162 3.838 6 C -0.195 4.195 7 C -0.210 4.210 8 C 0.144 3.856 9 C -0.225 4.225 10 C 0.054 3.946 11 N -0.345 5.345 12 C 0.239 3.761 13 C -0.546 4.546 14 H 0.026 0.974 15 C 0.015 3.985 16 N -0.942 5.942 17 Si 0.954 3.046 18 H -0.250 1.250 19 H -0.282 1.282 20 H -0.242 1.242 21 N -0.319 5.319 22 C 0.091 3.909 23 C 0.045 3.955 24 C -0.147 4.147 25 C 0.099 3.901 26 N -0.506 5.506 27 C 0.097 3.903 28 C -0.168 4.168 29 H 0.232 0.768 30 H 0.111 0.889 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.234 0.766 35 H 0.100 0.900 36 H 0.075 0.925 37 H 0.207 0.793 38 H 0.040 0.960 39 H 0.082 0.918 40 H 0.272 0.728 41 H 0.157 0.843 42 H 0.190 0.810 43 H 0.174 0.826 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.261 -5.674 18.677 24.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.200 4.200 3 C 0.036 3.964 4 N -0.265 5.265 5 C 0.035 3.965 6 C -0.195 4.195 7 C -0.228 4.228 8 C 0.017 3.983 9 C -0.238 4.238 10 C -0.093 4.093 11 N -0.125 5.125 12 C 0.119 3.881 13 C -0.584 4.584 14 H 0.044 0.956 15 C -0.184 4.184 16 N -0.580 5.580 17 Si 0.775 3.225 18 H -0.174 1.174 19 H -0.208 1.208 20 H -0.166 1.166 21 N -0.143 5.143 22 C -0.074 4.074 23 C 0.035 3.965 24 C -0.168 4.168 25 C -0.057 4.057 26 N -0.216 5.216 27 C -0.059 4.059 28 C -0.189 4.189 29 H 0.249 0.751 30 H 0.129 0.871 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.251 0.749 35 H 0.118 0.882 36 H 0.093 0.907 37 H 0.224 0.776 38 H 0.058 0.942 39 H 0.100 0.900 40 H 0.081 0.919 41 H 0.174 0.826 42 H 0.207 0.793 43 H 0.191 0.809 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -15.429 -6.181 16.635 23.515 hybrid contribution 0.662 1.859 0.607 2.065 sum -14.766 -4.322 17.242 23.108 Atomic orbital electron populations 1.25380 0.96681 1.00164 1.00155 1.23267 0.95163 1.00879 1.00659 1.19175 0.84745 0.98907 0.93585 1.61682 1.14936 1.05292 1.44551 1.19050 0.86294 0.90322 1.00795 1.23254 0.95360 1.00564 1.00362 1.25327 0.96827 0.99773 1.00897 1.20365 0.85146 1.01685 0.91093 1.19937 1.11087 0.97629 0.95109 1.23001 1.00262 0.99285 0.86783 1.48753 1.42213 1.16606 1.04945 1.19837 0.91677 0.82037 0.94563 1.21203 1.15482 0.94070 1.27680 0.95608 1.25910 0.93809 1.05116 0.93530 1.70050 1.21222 1.37470 1.29286 0.85641 0.80574 0.77360 0.78945 1.17379 1.20762 1.16559 1.77679 1.16799 0.97269 1.22510 1.20769 0.99467 0.94904 0.92212 1.18257 0.93342 0.90365 0.94518 1.22291 1.01539 0.92086 1.00906 1.23148 0.90935 0.97816 0.93792 1.67672 1.16093 1.31598 1.06211 1.22866 0.97818 0.87435 0.97811 1.22230 0.98199 0.99999 0.98483 0.75142 0.87147 0.90479 0.90500 0.89377 0.74932 0.88231 0.90687 0.77596 0.94241 0.90049 0.91867 0.82582 0.79338 0.80852 0.86248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.98 17.10 74.32 1.27 -2.71 16 2 C -0.20 -4.17 11.16 31.12 0.35 -3.82 16 3 C 0.16 2.70 5.44 84.50 0.46 3.15 16 4 N -0.54 -11.09 4.45 -923.06 -4.11 -15.20 16 5 C 0.16 3.40 5.30 84.50 0.45 3.85 16 6 C -0.19 -4.77 11.11 31.14 0.35 -4.43 16 7 C -0.21 -4.66 17.25 74.33 1.28 -3.37 16 8 C 0.14 2.74 4.98 85.56 0.43 3.16 16 9 C -0.23 -6.52 4.84 -19.95 -0.10 -6.62 16 10 C 0.05 1.69 10.67 83.47 0.89 2.58 16 11 N -0.35 -14.50 3.67 -351.91 -1.29 -15.79 16 12 C 0.24 10.73 5.33 85.63 0.46 11.19 16 13 C -0.55 -31.12 9.79 25.60 0.25 -30.87 16 14 H 0.03 1.73 8.06 -2.91 -0.02 1.70 16 15 C 0.02 0.86 5.47 84.65 0.46 1.32 16 16 N -0.94 -57.82 13.96 21.44 0.30 -57.52 16 17 Si 0.95 40.29 27.47 68.60 1.88 42.17 16 18 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 19 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 20 H -0.24 -9.30 6.54 99.48 0.65 -8.64 16 21 N -0.32 -14.50 12.44 -48.17 -0.60 -15.10 16 22 C 0.09 3.30 6.72 42.51 0.29 3.59 16 23 C 0.05 1.45 5.76 -19.84 -0.11 1.33 16 24 C -0.15 -3.65 9.02 22.57 0.20 -3.44 16 25 C 0.10 2.26 11.17 84.61 0.95 3.21 16 26 N -0.51 -13.67 10.35 -196.13 -2.03 -15.70 16 27 C 0.10 2.64 11.17 84.61 0.95 3.59 16 28 C -0.17 -5.34 9.89 22.58 0.22 -5.12 16 29 H 0.23 3.00 7.80 -4.41 -0.03 2.97 16 30 H 0.11 1.51 7.86 -2.39 -0.02 1.50 16 31 H 0.08 0.96 7.98 -2.38 -0.02 0.94 16 32 H 0.08 1.25 7.91 -2.39 -0.02 1.23 16 33 H 0.09 2.03 6.65 -2.39 -0.02 2.01 16 34 H 0.23 3.53 7.80 -4.42 -0.03 3.49 16 35 H 0.10 1.60 5.55 -2.39 -0.01 1.58 16 36 H 0.08 1.03 8.03 -2.39 -0.02 1.01 16 37 H 0.21 4.41 8.06 -2.91 -0.02 4.39 16 38 H 0.04 1.79 7.20 -2.39 -0.02 1.77 16 39 H 0.08 3.09 7.49 -2.39 -0.02 3.08 16 40 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 41 H 0.16 3.02 6.37 -2.91 -0.02 3.00 16 42 H 0.19 2.78 8.06 -2.91 -0.02 2.76 16 43 H 0.17 3.76 8.06 -2.91 -0.02 3.73 16 44 H 0.12 4.01 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -79.77 384.49 4.13 -75.64 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: 0.95 Total: 24.90 kcal Atomic # 6 Polarization: -32.44 SS G_CDS: 9.03 Total: -23.41 kcal Atomic # 7 Polarization: -111.58 SS G_CDS: -7.73 Total: -119.31 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 1.88 Total: 42.17 kcal Total: -79.77 4.13 -75.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278992147.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 298.079 kcal (2) G-P(sol) polarization free energy of solvation -79.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 218.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 222.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 29.99 seconds