Wall clock time and date at job start Tue Mar 31 2020 23:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86802 * 120.00254 * 2 1 4 4 H 1.48500 * 109.46904 * 270.00212 * 3 2 1 5 5 H 1.48499 * 109.47063 * 29.99952 * 3 2 1 6 6 H 1.48498 * 109.47113 * 149.99858 * 3 2 1 7 7 C 1.39898 * 119.99509 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99788 * 184.45138 * 7 2 1 9 9 C 1.41154 * 120.00207 * 4.45821 * 7 2 1 10 10 C 1.40867 * 120.16317 * 324.97357 * 9 7 2 11 11 C 1.36378 * 119.82533 * 179.68908 * 10 9 7 12 12 C 1.39474 * 120.16723 * 0.59174 * 11 10 9 13 13 N 1.39247 * 119.83287 * 179.73342 * 12 11 10 14 14 C 1.34773 * 120.00075 * 35.27004 * 13 12 11 15 15 O 1.21584 * 119.99790 * 355.71269 * 14 13 12 16 16 N 1.34777 * 120.00136 * 175.71270 * 14 13 12 17 17 C 1.46496 * 119.99995 * 180.02562 * 16 14 13 18 18 C 1.53003 * 109.46947 * 180.02562 * 17 16 14 19 19 H 1.08992 * 109.47095 * 54.99638 * 18 17 16 20 20 C 1.53008 * 109.46990 * 294.99763 * 18 17 16 21 21 O 1.42894 * 109.46996 * 65.00105 * 20 18 17 22 22 C 1.52998 * 109.47013 * 175.00140 * 18 17 16 23 23 H 1.09003 * 110.45758 * 59.29502 * 22 18 17 24 24 C 1.54512 * 110.51077 * 181.90206 * 22 18 17 25 25 C 1.54476 * 104.06108 * 118.64527 * 24 22 18 26 26 O 1.44427 * 104.80668 * 23.97647 * 25 24 22 27 27 C 1.44644 * 105.36636 * 319.56884 * 26 25 24 28 28 C 1.39483 * 120.33630 * 359.70467 * 12 11 10 29 29 C 1.36374 * 120.16985 * 359.97438 * 28 12 11 30 30 H 0.97002 * 120.00001 * 0.02562 * 1 2 3 31 31 H 1.08000 * 120.08531 * 359.97438 * 10 9 7 32 32 H 1.07990 * 119.91363 * 180.29890 * 11 10 9 33 33 H 0.97001 * 119.99637 * 215.27086 * 13 12 11 34 34 H 0.97002 * 119.99314 * 359.97438 * 16 14 13 35 35 H 1.08998 * 109.47139 * 299.99837 * 17 16 14 36 36 H 1.09005 * 109.47305 * 60.00095 * 17 16 14 37 37 H 1.08995 * 109.46743 * 185.00132 * 20 18 17 38 38 H 1.09000 * 109.47081 * 305.00332 * 20 18 17 39 39 H 0.96692 * 114.00358 * 180.02562 * 21 20 18 40 40 H 1.09002 * 110.50736 * 237.28558 * 24 22 18 41 41 H 1.08994 * 110.51234 * 359.86027 * 24 22 18 42 42 H 1.08997 * 110.37465 * 142.80832 * 25 24 22 43 43 H 1.08999 * 110.37086 * 265.03710 * 25 24 22 44 44 H 1.08999 * 110.33951 * 281.58298 * 27 26 25 45 45 H 1.09005 * 110.50455 * 159.18423 * 27 26 25 46 46 H 1.08003 * 119.91511 * 179.97438 * 28 12 11 47 47 H 1.07998 * 120.08823 * 179.97438 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.4903 2.0464 -1.4001 5 1 1.4403 2.6527 0.7000 6 1 3.5404 1.4401 0.7001 7 6 2.0082 -1.2116 0.0005 8 1 3.0858 -1.2130 0.0731 9 6 1.3055 -2.4322 -0.0939 10 6 0.0437 -2.5717 0.5166 11 6 -0.6319 -3.7520 0.4156 12 6 -0.0712 -4.8233 -0.2795 13 7 -0.7648 -6.0271 -0.3735 14 6 -2.1086 -6.0244 -0.4757 15 8 -2.7213 -4.9764 -0.4075 16 7 -2.7733 -7.1833 -0.6536 17 6 -4.2340 -7.1802 -0.7653 18 6 -4.7336 -8.6132 -0.9599 19 1 -4.3608 -9.2410 -0.1506 20 6 -4.2264 -9.1528 -2.2988 21 8 -2.8012 -9.2507 -2.2638 22 6 -6.2635 -8.6255 -0.9517 23 1 -6.6538 -7.9919 -1.7482 24 6 -6.7941 -10.0691 -1.0991 25 6 -7.5896 -10.3113 0.2028 26 8 -7.9618 -8.9924 0.6587 27 6 -6.8011 -8.1628 0.4206 28 6 1.1805 -4.6948 -0.8814 29 6 1.8652 -3.5187 -0.7945 30 1 -0.4850 0.8401 -0.0004 31 1 -0.3895 -1.7445 1.0594 32 1 -1.6015 -3.8589 0.8791 33 1 -0.2806 -6.8676 -0.3655 34 1 -2.2843 -8.0192 -0.7084 35 1 -4.6671 -6.7653 0.1449 36 1 -4.5319 -6.5721 -1.6194 37 1 -4.6541 -10.1390 -2.4785 38 1 -4.5245 -8.4760 -3.0996 39 1 -2.4098 -9.5863 -3.0818 40 1 -7.4487 -10.1486 -1.9670 41 1 -5.9666 -10.7738 -1.1802 42 1 -8.4791 -10.9073 -0.0013 43 1 -6.9628 -10.8078 0.9436 44 1 -6.0529 -8.3264 1.1961 45 1 -7.0850 -7.1111 0.3819 46 1 1.6084 -5.5289 -1.4176 47 1 2.8345 -3.4208 -1.2608 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280466691.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:14 Heat of formation + Delta-G solvation = -104.984991 kcal Electronic energy + Delta-G solvation = -28308.860463 eV Core-core repulsion = 24263.280149 eV Total energy + Delta-G solvation = -4045.580314 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 7.35 seconds Orbital eigenvalues (eV) -40.33893 -39.59641 -37.86352 -37.14099 -35.21760 -34.24562 -33.44605 -32.67726 -30.55644 -29.39165 -28.90570 -28.42440 -26.12764 -24.53379 -23.16065 -22.37163 -21.30767 -20.91373 -20.54248 -19.71103 -18.07416 -17.48318 -17.19856 -17.00505 -16.37786 -16.12454 -15.85848 -15.27200 -15.15287 -14.80357 -14.65849 -14.33357 -13.87094 -13.77817 -13.70754 -13.14985 -13.03031 -12.76463 -12.54930 -12.36684 -11.99830 -11.94372 -11.75221 -11.64444 -11.36896 -11.27061 -11.10829 -11.08650 -10.92143 -10.84425 -10.41523 -10.29991 -10.15473 -9.86813 -9.78538 -9.47029 -9.00014 -8.70210 -8.61302 -7.41431 -6.74935 -6.50001 -4.23411 2.78726 3.10730 3.14205 3.16559 3.19304 3.24743 3.59806 3.66889 3.86491 4.05936 4.10430 4.38276 4.44514 4.52259 4.71463 4.78583 4.82440 4.84572 4.94051 4.99209 5.13386 5.18138 5.26828 5.32831 5.38340 5.46721 5.52645 5.64686 5.74035 5.78166 5.92368 6.22969 6.40221 6.47891 6.81490 6.95235 6.99440 7.14918 7.22865 7.28772 7.40281 7.55879 7.75478 7.98361 8.14469 8.19297 8.40518 8.66021 8.77778 9.03120 9.05950 9.27161 10.41282 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022892 B = 0.002104 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.831385 B =13305.498716 C =14170.899001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.068 3.932 3 Si 0.914 3.086 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.465 4.465 8 H 0.074 0.926 9 C 0.096 3.904 10 C -0.142 4.142 11 C -0.095 4.095 12 C 0.030 3.970 13 N -0.670 5.670 14 C 0.693 3.307 15 O -0.581 6.581 16 N -0.742 5.742 17 C 0.148 3.852 18 C -0.092 4.092 19 H 0.087 0.913 20 C 0.081 3.919 21 O -0.571 6.571 22 C -0.112 4.112 23 H 0.091 0.909 24 C -0.153 4.153 25 C 0.044 3.956 26 O -0.376 6.376 27 C 0.048 3.952 28 C -0.119 4.119 29 C -0.203 4.203 30 H 0.277 0.723 31 H 0.130 0.870 32 H 0.109 0.891 33 H 0.390 0.610 34 H 0.402 0.598 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.049 0.951 38 H 0.049 0.951 39 H 0.382 0.618 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.059 0.941 44 H 0.066 0.934 45 H 0.098 0.902 46 H 0.089 0.911 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.578 -21.844 -3.591 24.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.146 4.146 3 Si 0.739 3.261 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.496 4.496 8 H 0.092 0.908 9 C 0.094 3.906 10 C -0.162 4.162 11 C -0.115 4.115 12 C -0.063 4.063 13 N -0.316 5.316 14 C 0.393 3.607 15 O -0.458 6.458 16 N -0.402 5.402 17 C 0.023 3.977 18 C -0.111 4.111 19 H 0.105 0.895 20 C 0.004 3.996 21 O -0.377 6.377 22 C -0.132 4.132 23 H 0.110 0.890 24 C -0.191 4.191 25 C -0.033 4.033 26 O -0.294 6.294 27 C -0.028 4.028 28 C -0.139 4.139 29 C -0.223 4.223 30 H 0.088 0.912 31 H 0.147 0.853 32 H 0.127 0.873 33 H 0.223 0.777 34 H 0.239 0.761 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.231 0.769 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.109 0.891 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.116 0.884 46 H 0.107 0.893 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.667 -20.422 -2.844 24.199 hybrid contribution 1.047 -0.360 -1.000 1.492 sum -11.620 -20.783 -3.844 24.119 Atomic orbital electron populations 1.69802 1.07187 1.28574 1.38169 1.25877 0.94918 1.01059 0.92785 0.86225 0.80096 0.80765 0.78970 1.19689 1.20400 1.18806 1.19444 0.94547 0.90233 1.45372 0.90765 1.17713 0.92347 0.91877 0.88670 1.21304 0.96910 0.96076 1.01941 1.20682 0.99040 0.93315 0.98493 1.17108 0.94432 0.86481 1.08300 1.42090 1.04523 1.08276 1.76680 1.16060 0.82160 0.83954 0.78515 1.90922 1.67189 1.30244 1.57459 1.45118 1.06745 1.08647 1.79691 1.21051 0.80257 0.94493 1.01904 1.21475 0.94017 0.97429 0.98189 0.89467 1.22252 0.81232 0.99210 0.96936 1.86280 1.20067 1.89124 1.42253 1.22441 0.93741 0.97319 0.99653 0.89042 1.23079 1.00480 0.96324 0.99201 1.23407 0.99431 0.86123 0.94369 1.89181 1.35851 1.19858 1.84545 1.23599 0.88077 0.96376 0.94792 1.20053 0.95264 0.97524 1.01102 1.20665 1.01035 0.94608 1.05978 0.91208 0.85283 0.87338 0.77683 0.76109 0.91772 0.91939 0.93329 0.93257 0.76946 0.90375 0.90072 0.89146 0.92224 0.91627 0.88365 0.89285 0.88643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.28 10.61 55.55 0.59 -21.69 16 2 C 0.07 1.81 5.42 -17.34 -0.09 1.71 16 3 Si 0.91 19.65 29.56 -169.99 -5.03 14.63 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.46 -12.74 9.02 -37.85 -0.34 -13.09 16 8 H 0.07 1.94 7.85 -52.48 -0.41 1.53 16 9 C 0.10 2.66 5.55 -106.80 -0.59 2.07 16 10 C -0.14 -3.95 8.61 -39.26 -0.34 -4.29 16 11 C -0.10 -2.47 8.61 -39.79 -0.34 -2.81 16 12 C 0.03 0.68 6.31 -83.57 -0.53 0.16 16 13 N -0.67 -12.52 5.31 -14.10 -0.07 -12.59 16 14 C 0.69 13.20 8.40 -86.92 -0.73 12.47 16 15 O -0.58 -13.79 13.76 5.29 0.07 -13.72 16 16 N -0.74 -10.17 5.01 -65.23 -0.33 -10.49 16 17 C 0.15 1.72 4.96 -4.04 -0.02 1.70 16 18 C -0.09 -0.70 1.60 -90.61 -0.14 -0.84 16 19 H 0.09 0.67 8.12 -51.93 -0.42 0.25 16 20 C 0.08 0.53 6.27 37.16 0.23 0.76 16 21 O -0.57 -4.11 10.88 -35.23 -0.38 -4.50 16 22 C -0.11 -0.76 2.67 -89.05 -0.24 -1.00 16 23 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 24 C -0.15 -0.82 6.14 -25.16 -0.15 -0.97 16 25 C 0.04 0.28 7.64 37.93 0.29 0.57 16 26 O -0.38 -3.67 11.65 -35.23 -0.41 -4.08 16 27 C 0.05 0.40 6.12 37.93 0.23 0.63 16 28 C -0.12 -2.69 9.90 -39.79 -0.39 -3.08 16 29 C -0.20 -5.04 9.74 -39.26 -0.38 -5.43 16 30 H 0.28 7.00 8.30 -40.82 -0.34 6.66 16 31 H 0.13 3.75 6.15 -52.49 -0.32 3.42 16 32 H 0.11 2.87 6.22 -52.49 -0.33 2.54 16 33 H 0.39 5.77 8.83 -40.82 -0.36 5.41 16 34 H 0.40 4.66 6.30 -40.82 -0.26 4.41 16 35 H 0.06 0.79 7.18 -51.93 -0.37 0.42 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.05 0.23 6.51 -51.93 -0.34 -0.11 16 38 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.38 1.38 9.12 45.56 0.42 1.79 16 40 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.08 0.36 6.58 -51.93 -0.34 0.01 16 42 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.07 0.54 7.81 -51.93 -0.41 0.14 16 45 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 46 H 0.09 1.71 8.06 -52.48 -0.42 1.28 16 47 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 377.14 15.07 5.68 5.68 Total: -1.00 -34.33 377.14 -9.50 -43.84 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: -6.08 Total: 14.35 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -3.54 Total: -11.43 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: 0.19 Total: -44.78 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.72 Total: -22.29 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.03 Total: 14.63 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.33 -9.50 -43.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280466691.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.149 kcal (2) G-P(sol) polarization free energy of solvation -34.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.35 seconds